Antony M. Dean, PhD - Publications

Affiliations: 
Ecology, Evolution and Behavior University of Minnesota, Twin Cities, Minneapolis, MN 
Website:
http://www.cbs.umn.edu/labs/deanlab/

179 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kees ED, Levar CE, Miller SP, Bond DR, Gralnick JA, Dean AM. Survival of the first rather than the fittest in a Shewanella electrode biofilm. Communications Biology. 4: 536. PMID 33958697 DOI: 10.1038/s42003-021-02040-1  0.32
2019 Yi X, Dean AM. Adaptive Landscapes in the Age of Synthetic Biology. Molecular Biology and Evolution. PMID 30657938 DOI: 10.1093/Molbev/Msz004  0.8
2017 Dean AM, Lehman C, Yi X. Fluctuating Selection in the Moran. Genetics. PMID 28108586 DOI: 10.1534/Genetics.116.192914  0.8
2016 Yi X, Dean AM. Phenotypic plasticity as an adaptation to a functional trade-off. Elife. 5. PMID 27692064 DOI: 10.7554/Elife.19307  0.8
2016 Devamani T, Rauwerdink AM, Lunzer M, Jones BJ, Mooney JL, Tan MA, Zhang ZJ, Xu JH, Dean AM, Kazlauskas RJ. Catalytic promiscuity of ancestral esterases and hydroxynitrile lyases. Journal of the American Chemical Society. PMID 26736133 DOI: 10.1021/Jacs.5B12209  1
2016 Yi X, Dean AM. Author response: Phenotypic plasticity as an adaptation to a functional trade-off Elife. DOI: 10.7554/Elife.19307.017  0.8
2016 Koirala Y, Villano SM, Dean AM, Carstensen HH, Reyniers MF, Marin GB. Development of an improved kinetic mechanism for the pyrolysis of anisole in H2 environment International Congress On Energy 2014, Ice 2014 - Topical Conference At the 2014 Aiche Annual Meeting. 2: 1255-1257.  0.56
2016 Koirala Y, Villano SM, Dean AM, Carstensen HH, Reyniers MF, Marin GB. Development of an improved kinetic mechanism for the pyrolysis of anisole in H2 environment International Congress On Energy 2014, Ice 2014 - Topical Conference At the 2014 Aiche Annual Meeting. 2: 1255-1257.  0.56
2015 Rauwerdink A, Lunzer M, Devamani T, Jones B, Mooney J, Zhang ZJ, Xu JH, Kazlauskas RJ, Dean AM. Evolution of a Catalytic Mechanism. Molecular Biology and Evolution. PMID 26681154 DOI: 10.1093/Molbev/Msv338  1
2015 Wang K, Villano SM, Dean AM. The Impact of Resonance Stabilization on the Intramolecular Hydrogen-Atom Shift Reactions of Hydrocarbon Radicals. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26212671 DOI: 10.1002/Cphc.201500396  0.56
2015 Cooper JD, Neuhauser C, Dean AM, Kerr B. Tipping the mutation-selection balance: Limited migration increases the frequency of deleterious mutants. Journal of Theoretical Biology. 380: 123-133. PMID 25983046 DOI: 10.1016/J.Jtbi.2015.05.003  1
2015 Drabeck DH, Dean AM, Jansa SA. Why the honey badger don't care: Convergent evolution of venom-targeted nicotinic acetylcholine receptors in mammals that survive venomous snake bites. Toxicon : Official Journal of the International Society On Toxinology. 99: 68-72. PMID 25796346 DOI: 10.1016/J.Toxicon.2015.03.007  1
2015 Wang K, Villano SM, Dean AM. Reactions of allylic radicals that impact molecular weight growth kinetics. Physical Chemistry Chemical Physics : Pccp. 17: 6255-73. PMID 25648200 DOI: 10.1039/C4Cp05308G  0.56
2015 Bharadwaj VS, Vyas S, Villano SM, Maupin CM, Dean AM. Unravelling the impact of hydrocarbon structure on the fumarate addition mechanism--a gas-phase ab initio study. Physical Chemistry Chemical Physics : Pccp. 17: 4054-66. PMID 25566585 DOI: 10.1039/C4Cp04317K  0.56
2015 Wang K, Villano SM, Dean AM. Reactivity-Structure-Based Rate Estimation Rules for Alkyl Radical H Atom Shift and Alkenyl Radical Cycloaddition Reactions. The Journal of Physical Chemistry. A. 119: 7205-21. PMID 25563061 DOI: 10.1021/Jp511017Z  0.56
2015 Kim S, Dean AM. Impact of Finite Mixing on Gas-Phase Partial Oxidation for Selective Removal of Deposit Precursors from Gasifier Outlet Streams Energy and Fuels. 29: 6501-6511. DOI: 10.1021/Acs.Energyfuels.5B01616  0.56
2015 Carstensen HH, Dean AM. Rate constants for the Abstraction reactions RO2 + C2H6; R=H, CH3, and C2H5 Proceedings of the Combustion Institute. 30: 995-1002. DOI: 10.1016/j.proci.2004.08.076  0.56
2015 Kim S, Dean AM. The impact of fuel evaporation on the gas-phase kinetics in the mixing region of a diesel autothermal reformer International Journal of Hydrogen Energy. 40: 15477-15490. DOI: 10.1016/J.Ijhydene.2015.09.093  0.56
2015 Wang K, Villano SM, Dean AM. Fundamentally-based kinetic model for propene pyrolysis Combustion and Flame. 162: 4456-4470. DOI: 10.1016/J.Combustflame.2015.08.012  0.56
2015 Jablonski WS, Villano SM, Dean AM. A comparison of H2S, SO2, and COS poisoning on Ni/YSZ and Ni/K2O-CaAl2O4 during methane steam and dry reforming Applied Catalysis a: General. 502: 399-409. DOI: 10.1016/J.Apcata.2015.06.009  0.56
2014 Miller SP, Gonçalves S, Matias PM, Dean AM. Evolution of a transition state: role of Lys100 in the active site of isocitrate dehydrogenase. Chembiochem : a European Journal of Chemical Biology. 15: 1145-53. PMID 24797066 DOI: 10.1002/Cbic.201400040  1
2014 Woods DC, Lewis SM, Dean AM, Dragulji? D. Rejoinder Technometrics. 56: 25-28. DOI: 10.1080/00401706.2013.870094  0.44
2014 Dragulji? D, Woods DC, Dean AM, Lewis SM, Vine AJE. Screening strategies in the presence of interactions Technometrics. 56: 1-16. DOI: 10.1080/00401706.2013.775900  0.44
2014 Bogin GE, Osecky E, Chen JY, Ratcliff MA, Luecke J, Zigler BT, Dean AM. Experiments and computational fluid dynamics modeling analysis of large n -alkane ignition kinetics in the ignition quality tester Energy and Fuels. 28: 4781-4794. DOI: 10.1021/Ef500769J  0.56
2014 Morgan JP, Ghosh S, Dean AM. J.N. Srivastava and experimental design Journal of Statistical Planning and Inference. 144: 3-18. DOI: 10.1016/J.Jspi.2012.09.007  0.44
2014 Wang C, Dean AM, Zhu H, Kee RJ. Model-predicted effects of fuel droplet diameter and O2 addition in strained, opposed-flow, non-premixed, multicomponent, hydrocarbon flames Combustion and Flame. 161: 1998-2007. DOI: 10.1016/J.Combustflame.2014.01.013  0.56
2013 Brutinel ED, Dean AM, Gralnick JA. Description of a riboflavin biosynthetic gene variant prevalent in the phylum Proteobacteria. Journal of Bacteriology. 195: 5479-86. PMID 24097946 DOI: 10.1128/Jb.00651-13  1
2013 Yi X, Dean AM. Bounded population sizes, fluctuating selection and the tempo and mode of coexistence. Proceedings of the National Academy of Sciences of the United States of America. 110: 16945-50. PMID 24077262 DOI: 10.1073/Pnas.1309830110  1
2013 Bharadwaj VS, Dean AM, Maupin CM. Insights into the glycyl radical enzyme active site of benzylsuccinate synthase: a computational study. Journal of the American Chemical Society. 135: 12279-88. PMID 23865732 DOI: 10.1021/Ja404842R  0.56
2013 Villano SM, Carstensen HH, Dean AM. Rate rules, branching ratios, and pressure dependence of the HO2 + olefin addition channels. The Journal of Physical Chemistry. A. 117: 6458-73. PMID 23829768 DOI: 10.1021/Jp405262R  0.56
2013 Taglialegami J, Bogin G, Osecky E, Dean AM. Simulation of N-heptane and surrogate fuels for advanced combustion engines (Face) in a single-cylinder compression ignition engine Asme 2013 Internal Combustion Engine Division Fall Technical Conference, Icef 2013. 2. DOI: 10.1115/ICEF2013-19257  0.56
2013 Bogin GE, Osecky E, Ratcliff MA, Luecke J, He X, Zigler BT, Dean AM. Ignition quality tester (IQT) investigation of the negative temperature coefficient region of alkane autoignition Energy and Fuels. 27: 1632-1642. DOI: 10.1021/Ef301738B  0.56
2013 Katsaounis TI, Dean AM, Jones B. On equivalence of fractional factorial designs based on singular value decomposition Journal of Statistical Planning and Inference. 143: 1950-1953. DOI: 10.1016/j.jspi.2013.06.013  0.44
2013 Kim S, Dean AM, Bae J. Coupled transport and kinetics in the mixing region for hydrocarbon autothermal reforming applications International Journal of Hydrogen Energy. 38: 16140-16151. DOI: 10.1016/J.Ijhydene.2013.09.119  0.56
2013 Wang C, Dean AM, Zhu H, Kee RJ. The effects of multicomponent fuel droplet evaporation on the kinetics of strained opposed-flow diffusion flames Combustion and Flame. 160: 265-275. DOI: 10.1016/J.Combustflame.2012.10.012  0.56
2013 Kouri TM, Crabtree JD, Huynh L, Dean AM, Mehta DP. RCARM: Reaction classification using automated reaction mapping International Journal of Chemical Kinetics. 45: 125-139. DOI: 10.1002/Kin.20749  0.56
2013 Wang K, Villano SM, Dean AM. Experimental and modeling analysis of 1-butene pyrolysis: Characterization of molecular weight growth kinetics Fall Technical Meeting of the Western States Section of the Combustion Institute, Wss/Ci 2013 Fall Meeting. 91-97.  0.56
2013 Wang C, Dean AM, Zhu H, Kee RJ. Prediction of the effects of droplet size and O2 addition to the fuel side of strained opposed-flow diffusion flames Fall Technical Meeting of the Western States Section of the Combustion Institute, Wss/Ci 2013 Fall Meeting. 104-109.  0.56
2013 Sommariva S, Dean AM. Gas phase radical chemistry and its impact on lignin model compound reactivity Fall Technical Meeting of the Western States Section of the Combustion Institute, Wss/Ci 2013 Fall Meeting. 191-196.  0.56
2013 Villano SM, Carstensen HH, Dean AM. Rate rules, branching ratios, and pressure dependence of the HO2+olefin addition channels Fall Technical Meeting of the Western States Section of the Combustion Institute, Wss/Ci 2013 Fall Meeting. 98-103.  0.56
2013 Koirala Y, Villano SM, Carstensen HH, Dean AM. Pyrolysis kinetics of anisole and other simple lignin model compounds Fall Technical Meeting of the Western States Section of the Combustion Institute, Wss/Ci 2013 Fall Meeting. 64-71.  0.56
2012 Gonçalves S, Miller SP, Carrondo MA, Dean AM, Matias PM. Induced fit and the catalytic mechanism of isocitrate dehydrogenase. Biochemistry. 51: 7098-115. PMID 22891681 DOI: 10.1021/bi300483w  1
2012 Villano SM, Huynh LK, Carstensen HH, Dean AM. High-pressure rate rules for alkyl + O2 reactions. 2. The isomerization, cyclic ether formation, and β-scission reactions of hydroperoxy alkyl radicals. The Journal of Physical Chemistry. A. 116: 5068-89. PMID 22548467 DOI: 10.1021/Jp3023887  0.56
2012 Liu Q, Dean AM, Allenby GM. Bayesian designs for hierarchical linear models Statistica Sinica. 22: 393-417. DOI: 10.5705/ss.2009.319  0.44
2012 Moon H, Dean AM, Santner TJ. Two-stage sensitivity-based group screening in computer experiments Technometrics. 54: 376-387. DOI: 10.1080/00401706.2012.725994  0.44
2012 Draguljié D, Dean AM, Santner TJ. Noncollapsing space-filling designs for bounded nonrectangular regions Technometrics. 54: 169-178. DOI: 10.1080/00401706.2012.676951  0.44
2012 Kim S, Carstensen HH, Dean AM, Bae J. Investigation of gas-phase reactions in the mixing region for hydrocarbon autothermal reforming applications International Journal of Hydrogen Energy. 37: 7545-7553. DOI: 10.1016/J.Ijhydene.2012.01.096  0.56
2012 Carstensen HH, Dean AM. A quantitative kinetic analysis of CO elimination from phenoxy radicals International Journal of Chemical Kinetics. 44: 75-89. DOI: 10.1002/Kin.20622  0.56
2011 Villano SM, Huynh LK, Carstensen HH, Dean AM. High-pressure rate rules for alkyl + O2 reactions. 1. The dissociation, concerted elimination, and isomerization channels of the alkyl peroxy radical. The Journal of Physical Chemistry. A. 115: 13425-42. PMID 22003961 DOI: 10.1021/Jp2079204  0.56
2011 Xu C, Al Shoaibi AS, Wang C, Carstensen HH, Dean AM. Kinetic modeling of ethane pyrolysis at high conversion. The Journal of Physical Chemistry. A. 115: 10470-90. PMID 21848278 DOI: 10.1021/Jp206503D  0.56
2011 Qiu Q, Hernandez JC, Dean AM, Rao PH, Darlington GJ. CD24-positive cells from normal adult mouse liver are hepatocyte progenitor cells. Stem Cells and Development. 20: 2177-88. PMID 21361791 DOI: 10.1089/scd.2010.0352  0.32
2011 Jarvis MW, Daily JW, Carstensen HH, Dean AM, Sharma S, Dayton DC, Robichaud DJ, Nimlos MR. Direct detection of products from the pyrolysis of 2-phenethyl phenyl ether. The Journal of Physical Chemistry. A. 115: 428-38. PMID 21218825 DOI: 10.1021/Jp1076356  0.56
2011 Bogin GE, DeFilippo A, Chen JY, Chin G, Luecke J, Ratcliff MA, Zigler BT, Dean AM. Numerical and experimental investigation of n-heptane autoignition in the ignition quality tester (IQT) Energy and Fuels. 25: 5562-5572. DOI: 10.1021/Ef201079G  0.56
2011 Kang I, Carstensen HH, Dean AM. Impact of gas-phase reactions in the mixing region upstream of a diesel fuel autothermal reformer Journal of Power Sources. 196: 2020-2026. DOI: 10.1016/J.Jpowsour.2010.09.070  0.56
2011 Kee RJ, Yamashita K, Zhu H, Dean AM. The effects of liquid-fuel thermophysical properties, carrier-gas composition, and pressure, on strained opposed-flow non-premixed flames Combustion and Flame. 158: 1129-1139. DOI: 10.1016/J.Combustflame.2010.10.017  0.56
2011 Kim S, Dean AM, Carstensen HH, Bae J. Impact of gas-phase reactions in the mixing region of a hydrocarbon reformer Acs National Meeting Book of Abstracts 0.56
2010 Lunzer M, Golding GB, Dean AM. Pervasive cryptic epistasis in molecular evolution. Plos Genetics. 6: e1001162. PMID 20975933 DOI: 10.1371/Journal.Pgen.1001162  1
2010 Zhang J, Yang H, Long M, Li L, Dean AM. Evolution of enzymatic activities of testis-specific short-chain dehydrogenase/reductase in Drosophila. Journal of Molecular Evolution. 71: 241-9. PMID 20809353 DOI: 10.1007/S00239-010-9384-5  1
2010 Eshelman CM, Vouk R, Stewart JL, Halsne E, Lindsey HA, Schneider S, Gualu M, Dean AM, Kerr B. Unrestricted migration favours virulent pathogens in experimental metapopulations: evolutionary genetics of a rapacious life history. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2503-13. PMID 20643740 DOI: 10.1098/Rstb.2010.0066  1
2010 Dean AM. The future of molecular evolution. Embo Reports. 11: 409. PMID 20514039 DOI: 10.1038/Embor.2010.78  1
2010 Huynh LK, Carstensen HH, Dean AM. Detailed modeling of low-temperature propane oxidation: 1. The role of the propyl + O(2) reaction. The Journal of Physical Chemistry. A. 114: 6594-607. PMID 20509639 DOI: 10.1021/Jp1017218  0.56
2010 Villano SM, Hoffmann J, Carstensen HH, Dean AM. Selective removal of ethylene, a deposit precursor, from a "dirty" synthesis gas stream via gas-phase partial oxidation. The Journal of Physical Chemistry. A. 114: 6502-14. PMID 20496944 DOI: 10.1021/Jp102049C  0.56
2010 Bogin G, Dean AM, Ratcliff MA, Luecke J, Zigler BT. Expanding the experimental capabilities of the ignition quality tester for autoigniting fuels Sae International Journal of Fuels and Lubricants. 3: 353-367. DOI: 10.4271/2010-01-0741  0.56
2010 Kang I, Carstensen HH, Dean AM. Impact of gas-phase reactions on SOFC systems operating on diesel and biomass-derived fuels Materials Science Forum. 638: 1118-1124. DOI: 10.4028/Www.Scientific.Net/Msf.638-642.1118  0.56
2010 Al Shoaibi A, Dean AM. Kinetic analysis of C4 alkane and alkene pyrolysis: Implications for SOFC operation Journal of Fuel Cell Science and Technology. 7: 0410151-0410158. DOI: 10.1115/1.4000677  0.56
2010 Carstensen HH, Dean AM. Development of detailed kinetic models for the thermal conversion of biomass via first principle methods and rate estimation rules Acs Symposium Series. 1052: 201-243. DOI: 10.1021/bk-2010-1052.ch010  0.56
2010 Park DK, Bose M, Notz WI, Dean AM. Efficient crossover designs in the presence of interactions between direct and carry-over treatment effects Journal of Statistical Planning and Inference. DOI: 10.1016/J.Jspi.2010.08.005  0.44
2010 Villano SM, Hoffmann J, Carstensen HH, Dean AM. Selective oxidation of ethylene in a model dirty synthesis gas stream: An experimental and kinetic modeling study Acs National Meeting Book of Abstracts 0.56
2010 Carstensen HH, Huynh LK, Dean AM. Detailed modeling of low-temperature alkane oxidation: High-pressure rate rules for alkyl+O2 reactions Aiche Annual Meeting, Conference Proceedings 0.56
2010 Jarvis MW, Robichaud DJ, Nimlos MR, Daily JW, Carstensen HH, Dean AM. Pyrolysis of phenethyl phenyl ether generates PAH precursors Western States Section of the Combustion Institute Spring Technical Meeting 2010. 487-515.  0.56
2009 Zhong S, Miller SP, Dykhuizen DE, Dean AM. Transcription, translation, and the evolution of specialists and generalists. Molecular Biology and Evolution. 26: 2661-78. PMID 19706726 DOI: 10.1093/Molbev/Msp187  1
2009 Zhang B, Wang B, Wang P, Cao Z, Huang E, Hao J, Dean AM, Zhu G. Enzymatic characterization of a monomeric isocitrate dehydrogenase from Streptomyces lividans TK54. Biochimie. 91: 1405-10. PMID 19631711 DOI: 10.1016/J.Biochi.2009.07.011  1
2009 Carstensen HH, Dean AM. Rate constant rules for the automated generation of gas-phase reaction mechanisms. The Journal of Physical Chemistry. A. 113: 367-80. PMID 19090679 DOI: 10.1021/Jp804939V  0.56
2009 Ranjan P, Bingham DR, Dean AM. Existence and construction of randomization defining contrast subspaces for regular factorial designs Annals of Statistics. 37: 3580-3599. DOI: 10.1214/08-AOS644  0.44
2009 Goldin G, Zhu H, Kattke K, Dean AM, Braun R, Kee RJ, Zhang D, Maier L, Deutchmann O. Coupling complex reformer chemical kinetics with three-dimensional computational fluid dynamics Ecs Transactions. 25: 1253-1262. DOI: 10.1149/1.3205654  0.56
2009 Naik CV, Dean AM. Modeling high pressure ethane oxidation and pyrolysis Proceedings of the Combustion Institute. 32: 437-443. DOI: 10.1016/j.proci.2008.05.057  0.56
2009 Marda JR, DiBenedetto J, McKibben S, Evans RJ, Czernik S, French RJ, Dean AM. Non-catalytic partial oxidation of bio-oil to synthesis gas for distributed hydrogen production International Journal of Hydrogen Energy. 34: 8519-8534. DOI: 10.1016/J.Ijhydene.2009.07.099  0.56
2009 Dykhuizen DE, Dean AM. Experimental evolution from the bottom up Experimental Evolution: Concepts, Methods, and Applications of Selection Experiments. 86-106.  1
2009 Carstensen HH, Dean AM. Rate estimation rules for H abstraction reactions from alcohols by H atoms and CH3 radicals Acs National Meeting Book of Abstracts 0.56
2009 Kang I, Shoaibi AA, Dean AM. Ethylene pyrolysis and the subsequent molecular weight growth reactions Acs National Meeting Book of Abstracts 0.56
2009 Carstensen HH, Dean AM. Rate constants for the elimination of water from alcohols and biomass model compounds Acs National Meeting Book of Abstracts 0.56
2009 Kang I, Carstensen HH, Dean AM. Impact of imperfect mixing during diesel autothermal reforming Acs National Meeting Book of Abstracts 0.56
2009 Huynh LK, Shoaibi AA, Cartensen HH, Dean AM. Low temperature partial oxidation of ethane and propane Acs National Meeting Book of Abstracts 0.56
2009 Bogin GE, DeFilippo A, Chen JY, Chin G, Luecke J, Ratcliff MA, Zigler BT, Dean AM. Modeling the fuel spray and combustion process of the ignition quality Tester™ with KIVA-3V Fall Technical Meeting of the Western States Section of the Combustion Institute 2009, Wss/Ci 2009 Fall Meeting. 1: 507-528.  0.56
2008 Stoebel DM, Dean AM, Dykhuizen DE. The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products. Genetics. 178: 1653-60. PMID 18245823 DOI: 10.1534/Genetics.107.085399  1
2008 Vine AE, Lewis SM, Dean AM, Brunson D. A critical assessment of two-stage group screening through industrial experimentation (Technometrics (2008) 50 (15-25)) Technometrics. 50: 230. DOI: 10.1198/004017008000000235  0.44
2008 Daggett JM, Sullivan NP, Kee RJ, Zhu H, Dean AM. Ethanol transport and chemistry in solid oxide fuel cells Proceedings of the 6th International Conference On Fuel Cell Science, Engineering, and Technology. 453-460. DOI: 10.1115/FuelCell2008-65229  0.56
2008 Pomfret MB, Marda J, Jackson GS, Eichhorn BW, Dean AM, Walker RA. Hydrocarbon fuels in solid oxide fuel cells: In situ Raman studies of graphite formation and oxidation Journal of Physical Chemistry C. 112: 5232-5240. DOI: 10.1021/Jp711312P  0.56
2008 Katsaounis TI, Dean AM. A survey and evaluation of methods for determination of combinatorial equivalence of factorial designs Journal of Statistical Planning and Inference. 138: 245-258. DOI: 10.1016/j.jspi.2007.05.008  0.44
2008 Ruan S, MacEachern SN, Otter T, Dean AM. The dependent poisson race model and modeling dependence in conjoint choice experiments Psychometrika. 73: 261-288. DOI: 10.1007/S11336-007-9035-Y  0.44
2008 Marda JR, Dean AM, Czernik S, Evans RJ, French R, Ratcliff M. Distributed reforming of bio-oil for hydrogen production 2008 Aiche Spring National Meeting, Conference Proceedings 0.56
2008 Marda JR, Dean AM, Czernik S, Evans RJ, French R, Ratcliff M. Intermediate temperature catalytic reforming of bio-oil for distributed hydrogen production 2008 Aiche Spring National Meeting, Conference Proceedings 0.56
2008 Marda JR, Czernik SR, Dean AM, Evans R, French RJ, Ratcliff MA. Importance of a noncatalytic step in the distributed reforming of bio-oil for hydrogen production Acs National Meeting Book of Abstracts 0.56
2008 Meeks E, Ando H, Chou CP, Dean AM, Hodgson D, Koshi M, Lengyel I, Maas U, Naik CV, Puduppakkam KV, Reitz R, Wang C, Westbrook CK. New modeling approaches using detailed kinetics for advanced engines Proceedings of the 7th International Conference On Modeling and Diagnostics For Advanced Engine Systems, Comodia 2008. 469-474.  0.56
2008 Al Shoaibi A, Dean AM. Kinetic analysis of molecular weight growth of olefin pyrolysis Acs National Meeting Book of Abstracts 0.56
2008 Majumdar D, Dean AM, Lewis SM. Uniformly balanced repeated measurements designs in the presence of subject dropout Statistica Sinica. 18: 235-253.  0.44
2007 Dean AM, Thornton JW. Mechanistic approaches to the study of evolution: the functional synthesis. Nature Reviews. Genetics. 8: 675-88. PMID 17703238 DOI: 10.1038/Nrg2160  1
2007 Randolph KL, Dean AM. Hydrocarbon fuel effects in solid-oxide fuel cell operation: an experimental and modeling study of n-hexane pyrolysis. Physical Chemistry Chemical Physics : Pccp. 9: 4245-58. PMID 17687473 DOI: 10.1039/B702860A  0.56
2007 Merlo LM, Lunzer M, Dean AM. An empirical test of the concomitantly variable codon hypothesis. Proceedings of the National Academy of Sciences of the United States of America. 104: 10938-43. PMID 17578921 DOI: 10.1073/Pnas.0701900104  1
2007 Meeks E, Deur JM, Hodgson D, Petrova MV, Puduppakkam KV, Wang C, Westbrook CK, Dean AM, Green WH, Koshi M, Maas U. Application of model fuels to engine simulation Sae Technical Papers. DOI: 10.4271/2007-01-1843  0.56
2007 Carstensen HH, Dean AM. Chapter 4 The Kinetics of Pressure-Dependent Reactions Comprehensive Chemical Kinetics. 42: 101-184. DOI: 10.1016/S0069-8040(07)42004-0  0.56
2007 Carstensen HH, Dean AM, Deutschmann O. Rate constants for the H abstraction from alkanes (R-H) by R′O 2̇ radicals: A systematic study on the impact of R and R′ Proceedings of the Combustion Institute. 31: 149-157. DOI: 10.1016/j.proci.2006.08.091  0.56
2007 Liu Y, Ruan S, Dean AM. Construction and analysis of Es2 efficient supersaturated designs Journal of Statistical Planning and Inference. 137: 1516-1529. DOI: 10.1016/j.jspi.2006.09.001  0.44
2007 Randolph KL, Dean AM. Experimental and modeling analysis of C6 isomers: Implications for solid-oxide fuel cell operation 2007 Aiche Annual Meeting 0.56
2007 Gupta GK, Joshi A, Dean AM, Turman B, Zhu H, Kee RJ, Sullivan N. Reforming kinetics of methane, ethane and ethanol within a Ni-YSZ anode Aiche Annual Meeting, Conference Proceedings 0.56
2007 Marda JR, Dean AM, Czernik S, Evans RJ, French RJ, Ratcliff MA. Intermediate temperature conversion of bio-oil to synthesis gas for distributed hydrogen production Aiche Annual Meeting, Conference Proceedings 0.56
2007 Meeks E, Deur JM, Hodgson D, Miller SF, Petrova MV, Puduppakkam KV, Wang C, Westbrook CK, Dean AM, Koshi M, Maas U. Application of model fuels to diesel engine simulation 5th Us Combustion Meeting 2007. 4: 2262-2270.  0.56
2006 Miller SP, Lunzer M, Dean AM. Direct demonstration of an adaptive constraint. Science (New York, N.Y.). 314: 458-61. PMID 17053145 DOI: 10.1126/Science.1133479  1
2006 Kerr B, Neuhauser C, Bohannan BJ, Dean AM. Local migration promotes competitive restraint in a host-pathogen 'tragedy of the commons'. Nature. 442: 75-8. PMID 16823452 DOI: 10.1038/Nature04864  1
2006 Merlo LM, Sadowsky MJ, Ferguson JA, Dean AM. The argRB of Escherichia coli is rare in isolates obtained from natural sources. Gene. 376: 240-7. PMID 16797147 DOI: 10.1016/J.Gene.2006.04.002  1
2006 Bortnick SM, Dean AM, Santner TJ. Efficient designs for one-sided comparisons of two or three treatments with a control in a one-way layout Biometrika. 93: 127-135. DOI: 10.1093/biomet/93.1.127  0.44
2006 Gupta GK, Marda JR, Dean AM, Colclasure AM, Zhu H, Kee RJ. Performance predictions of a tubular SOFC operating on a partially reformed JP-8 surrogate Journal of Power Sources. 162: 553-562. DOI: 10.1016/J.Jpowsour.2006.06.041  0.56
2006 Gupta GK, Dean AM, Ahn K, Gorte RJ. Comparison of conversion and deposit formation of ethanol and butane under SOFC conditions Journal of Power Sources. 158: 497-503. DOI: 10.1016/J.Jpowsour.2005.09.036  0.56
2006 Gupta GK, Hecht ES, Zhu H, Dean AM, Kee RJ. Gas-phase reactions of methane and natural-gas with air and steam in non-catalytic regions of a solid-oxide fuel cell Journal of Power Sources. 156: 434-447. DOI: 10.1016/J.Jpowsour.2005.06.003  0.56
2006 Naik CV, Dean AM. Detailed kinetic modeling of ethane oxidation Combustion and Flame. 145: 16-37. DOI: 10.1016/J.Combustflame.2005.12.006  0.56
2006 Dean AM, Gupta GK, Marda JR, Colclasure A, Zhu H, Kee RJ. Effect of varying methane slip on the performance of a tubular SOFC operating on partially reformed JP-8 Acs National Meeting Book of Abstracts. 232.  0.56
2005 Carstensen HH, Naik CV, Dean AM. Detailed modeling of the reaction of C2H5 + O2. The Journal of Physical Chemistry. A. 109: 2264-81. PMID 16838997 DOI: 10.1021/Jp0451142  0.56
2005 Lunzer M, Miller SP, Felsheim R, Dean AM. The biochemical architecture of an ancient adaptive landscape. Science (New York, N.Y.). 310: 499-501. PMID 16239478 DOI: 10.1126/Science.1115649  1
2005 Suiter AM, Dean AM. Selection in a cyclical environment: possible impact of phenotypic lag on Darwinian fitness. Journal of Molecular Evolution. 61: 153-70. PMID 16132472 DOI: 10.1007/S00239-004-0210-9  1
2005 Zhu G, Golding GB, Dean AM. The selective cause of an ancient adaptation. Science (New York, N.Y.). 307: 1279-82. PMID 15653464 DOI: 10.1126/Science.1106974  1
2005 Dean AM. Protecting haploid polymorphisms in temporally variable environments. Genetics. 169: 1147-56. PMID 15545644 DOI: 10.1534/Genetics.104.036053  1
2005 Bortnick SM, Dean AM, Hsu JC. Efficiency of block designs for simultaneous comparison of two test treatments with a control Journal of Statistical Planning and Inference. 129: 109-124. DOI: 10.1016/J.Jspi.2004.06.042  0.44
2005 Hecht ES, Gupta GK, Zhu H, Dean AM, Kee RJ, Maier L, Deutschmann O. Methane reforming kinetics within a Ni-YSZ SOFC anode support Applied Catalysis a: General. 295: 40-51. DOI: 10.1016/J.Apcata.2005.08.003  0.56
2005 Evangelaras H, Koukouvinos C, Dean AM, Dingus CA. Projection properties of certain three level orthogonal arrays Metrika. 62: 241-257. DOI: 10.1007/s00184-005-0409-9  0.44
2005 Dean AM, Koukouvinos C. Metrika: Preface Metrika. 62: 125-126. DOI: 10.1007/s00184-005-0402-3  0.44
2005 Carstensen HH, Dean AM, Deutschmann O. Rate constants for the H-abstraction of alkanes by peroxyradicals (RO 2): A comparison between transition state theory (TST) calculations and empirical estimates | Geschwindigkeitskonstanten für die H-Ab-straktion von Alkanen durch Peroxiradikale (RO 2): Ein Vergleich zwischen TST-Berechnungen und empirischen Abschätzungen Chemie-Ingenieur-Technik. 77: 991. DOI: 10.1002/Cite.200590062  0.56
2005 Gupta GK, Dean AM, Hecht ES, Zhu H, Kee RJ. The influence of heterogeneous chemistry and electrochemistry on gas-phase molecular-weight growth and deposit formation Proceedings - Electrochemical Society. 679-688.  0.56
2005 Vine AE, Lewis SM, Dean AM. Two-stage group screening in the presence of noise factors and unequal probabilities of active effects Statistica Sinica. 15: 871-888.  0.44
2004 Zhang J, Dean AM, Brunet F, Long M. Evolving protein functional diversity in new genes of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 101: 16246-50. PMID 15534206 DOI: 10.1073/Pnas.0407066101  1
2004 Dykhuizen DE, Dean AM. Evolution of specialists in an experimental microcosm. Genetics. 167: 2015-26. PMID 15342537 DOI: 10.1534/Genetics.103.025205  1
2004 Zhong S, Khodursky A, Dykhuizen DE, Dean AM. Evolutionary genomics of ecological specialization. Proceedings of the National Academy of Sciences of the United States of America. 101: 11719-24. PMID 15289609 DOI: 10.1073/Pnas.0404397101  1
2004 Zhong S, Dean AM. Rapid identification and mapping of insertion sequences in Escherichia coli genomes using vectorette PCR. Bmc Microbiology. 4: 26. PMID 15242519 DOI: 10.1186/1471-2180-4-26  1
2004 Ma C, Kotaria R, Mayor JA, Eriks LR, Dean AM, Walters DE, Kaplan RS. The mitochondrial citrate transport protein: probing the secondary structure of transmembrane domain III, identification of residues that likely comprise a portion of the citrate transport pathway, and development of a model for the putative TMDIII-TMDIII' interface. The Journal of Biological Chemistry. 279: 1533-40. PMID 14561747 DOI: 10.1074/Jbc.M310866200  1
2004 Dupplaw DP, Brunson D, Vine AJE, Please CP, Lewis SM, Dean AM, Keane AJ, Tindall MJ. A Web-based knowledge elicitation system (GISEL) for planning and assessing group screening experiments for product development Journal of Computing and Information Science in Engineering. 4: 218-225. DOI: 10.1115/1.1778192  0.44
2004 Matheu D, Dean AM, Grenda JM. Pressure-dependent automated mechanism generation for high-conversion ethane pyrolysis Acs National Meeting Book of Abstracts. 228: PHYS-150.  0.56
2004 O'Gara K, Sheng C, Dean AM. Deposit formation within a solid oxide fuel cell (SOFC) operating on butane Acs Division of Fuel Chemistry, Preprints. 49: 762-763.  0.56
2003 Suiter AM, Bänziger O, Dean AM. Fitness consequences of a regulatory polymorphism in a seasonal environment. Proceedings of the National Academy of Sciences of the United States of America. 100: 12782-6. PMID 14555766 DOI: 10.1073/Pnas.2134994100  1
2002 Dean AM, Neuhauser C, Grenier E, Golding GB. The pattern of amino acid replacements in alpha/beta-barrels. Molecular Biology and Evolution. 19: 1846-64. PMID 12411594 DOI: 10.1093/Oxfordjournals.Molbev.A004009  1
2002 Tahoe NM, Dean AM, Curtsinger JW. Nucleotide variations in the lxd region of Drosophila melanogaster: characterization of a candidate modifier of lifespan. Gene. 297: 221-8. PMID 12384303 DOI: 10.1016/S0378-1119(02)00916-2  1
2002 Lunzer M, Natarajan A, Dykhuizen DE, Dean AM. Enzyme kinetics, substitutable resources and competition: from biochemistry to frequency-dependent selection in lac. Genetics. 162: 485-99. PMID 12242256  1
2002 Singh SK, Miller SP, Dean A, Banaszak LJ, LaPorte DC. Bacillus subtilis isocitrate dehydrogenase. A substrate analogue for Escherichia coli isocitrate dehydrogenase kinase/phosphatase. The Journal of Biological Chemistry. 277: 7567-73. PMID 11751849 DOI: 10.1074/Jbc.M107908200  1
2000 Watt WB, Dean AM. Molecular-functional studies of adaptive genetic variation in prokaryotes and eukaryotes. Annual Review of Genetics. 34: 593-622. PMID 11092840 DOI: 10.1146/Annurev.Genet.34.1.593  1
2000 Dean AM, Golding GB. Enzyme evolution explained (sort of). Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 6-17. PMID 10902152  1
2000 Bishop JG, Dean AM, Mitchell-Olds T. Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution. Proceedings of the National Academy of Sciences of the United States of America. 97: 5322-7. PMID 10805791 DOI: 10.1073/Pnas.97.10.5322  1
2000 Kaplan RS, Mayor JA, Brauer D, Kotaria R, Walters DE, Dean AM. The yeast mitochondrial citrate transport protein. Probing the secondary structure of transmembrane domain iv and identification of residues that likely comprise a portion of the citrate translocation pathway. The Journal of Biological Chemistry. 275: 12009-16. PMID 10766832 DOI: 10.1074/Jbc.275.16.12009  1
2000 Miller SP, Chen R, Karschnia EJ, Romfo C, Dean A, LaPorte DC. Locations of the regulatory sites for isocitrate dehydrogenase kinase/phosphatase Journal of Biological Chemistry. 275: 833-839. PMID 10625615 DOI: 10.1074/Jbc.275.2.833  1
1999 Dean AM, Dean FM. Carbocations in the synthesis of prostaglandins by the cyclooxygenase of PGH synthase? A radical departure! Protein Science : a Publication of the Protein Society. 8: 1087-98. PMID 10338019 DOI: 10.1110/Ps.8.5.1087  1
1998 Golding GB, Dean AM. The structural basis of molecular adaptation. Molecular Biology and Evolution. 15: 355-69. PMID 9549087 DOI: 10.1093/Oxfordjournals.Molbev.A025932  1
1998 Dean AM. The Molecular Anatomy of an Ancient Adaptive Event American Scientist. 86: 26-37. DOI: 10.1511/1998.1.26  1
1997 Chen R, Greer AF, Dean AM. Structural constraints in protein engineering--the coenzyme specificity of Escherichia coli isocitrate dehydrogenase. European Journal of Biochemistry / Febs. 250: 578-82. PMID 9428712 DOI: 10.1111/J.1432-1033.1997.0578A.X  1
1997 Redfield RJ, Schrag MR, Dean AM. The evolution of bacterial transformation: sex with poor relations. Genetics. 146: 27-38. PMID 9135998  1
1997 Dean AM, Golding GB. Protein engineering reveals ancient adaptive replacements in isocitrate dehydrogenase. Proceedings of the National Academy of Sciences of the United States of America. 94: 3104-9. PMID 9096353 DOI: 10.1073/Pnas.94.7.3104  1
1997 Chen R, Greer AF, Dean AM, Hurley JH. Engineering secondary structure to invert coenzyme specificity in isopropylmalate dehydrogenase Techniques in Protein Chemistry. 8: 809-816. DOI: 10.1016/S1080-8914(97)80078-6  1
1996 Chen R, Greer A, Dean AM. Redesigning secondary structure to invert coenzyme specificity in isopropylmalate dehydrogenase. Proceedings of the National Academy of Sciences of the United States of America. 93: 12171-6. PMID 8901552 DOI: 10.1073/Pnas.93.22.12171  1
1996 Dean AM, Shiau AK, Koshland DE. Determinants of performance in the isocitrate dehydrogenase of Escherichia coli. Protein Science : a Publication of the Protein Society. 5: 341-7. PMID 8745412 DOI: 10.1002/Pro.5560050218  1
1996 Chen R, Grobler JA, Hurley JH, Dean AM. Second-site suppression of regulatory phosphorylation in Escherichia coli isocitrate dehydrogenase. Protein Science : a Publication of the Protein Society. 5: 287-95. PMID 8745407 DOI: 10.1002/Pro.5560050213  1
1996 Stoddard BL, Dean A, Bash PA. Combining Laue diffraction and molecular dynamics to study enzyme intermediates Nature Structural Biology. 3: 590-595. PMID 8673602 DOI: 10.1038/Nsb0796-590  1
1996 Hurley JH, Chen R, Dean AM. Determinants of cofactor specificity in isocitrate dehydrogenase: structure of an engineered NADP+ --> NAD+ specificity-reversal mutant. Biochemistry. 35: 5670-8. PMID 8639526 DOI: 10.1021/Bi953001Q  1
1995 Dean AM, Dvorak L. The role of glutamate 87 in the kinetic mechanism of Thermus thermophilus isopropylmalate dehydrogenase. Protein Science : a Publication of the Protein Society. 4: 2156-67. PMID 8535253 DOI: 10.1002/Pro.5560041022  1
1995 Chen R, Greer A, Dean AM. A highly active decarboxylating dehydrogenase with rationally inverted coenzyme specificity. Proceedings of the National Academy of Sciences of the United States of America. 92: 11666-70. PMID 8524825 DOI: 10.1073/Pnas.92.25.11666  1
1995 Dean AM. A molecular investigation of genotype by environment interactions. Genetics. 139: 19-33. PMID 7705623  1
1994 Dean AM. Fitness, flux and phantoms in temporally variable environments. Genetics. 136: 1481-95. PMID 8013921  1
1994 Hurley JH, Dean AM. Structure of 3-isopropylmalate dehydrogenase in complex with NAD+: ligand-induced loop closing and mechanism for cofactor specificity. Structure (London, England : 1993). 2: 1007-16. PMID 7881901 DOI: 10.1016/S0969-2126(94)00104-9  1
1994 Dykhuizen DE, Dean AM. Predicted fitness changes along an environmental gradient Evolutionary Ecology. 8: 524-541. DOI: 10.1007/Bf01238256  1
1993 Stoddard BL, Dean A, Koshland DE. Structure of isocitrate dehydrogenase with isocitrate, nicotinamide adenine dinucleotide phosphate, and calcium at 2.5-å resolution: a pseudo-michaelis ternary complex Biochemistry®. 32: 9310-9316. PMID 8369300 DOI: 10.1021/Bi00087A008  1
1993 Dean AM, Koshland DE. Kinetic mechanism of Escherichia coli isocitrate dehydrogenase. Biochemistry. 32: 9302-9. PMID 8369299 DOI: 10.1021/Bi00087A007  1
1991 Hurley JH, Dean AM, Koshland DE, Stroud RM. Catalytic mechanism of NADP(+)-dependent isocitrate dehydrogenase: implications from the structures of magnesium-isocitrate and NADP+ complexes. Biochemistry. 30: 8671-8. PMID 1888729 DOI: 10.1021/Bi00099A026  0.6
1990 Dykhuizen DE, Dean AM. Enzyme activity and fitness: Evolution in solution. Trends in Ecology & Evolution. 5: 257-62. PMID 21232368 DOI: 10.1016/0169-5347(90)90067-N  1
1990 Hurley JH, Dean AM, Thorsness PE, Koshland DE, Stroud RM. Regulation of isocitrate dehydrogenase by phosphorylation involves no long-range conformational change in the free enzyme. The Journal of Biological Chemistry. 265: 3599-602. PMID 2406256 DOI: 10.2210/Pdb4Icd/Pdb  1
1990 Dean AM, Koshland DE. Electrostatic and steric contributions to regulation at the active site of isocitrate dehydrogenase. Science (New York, N.Y.). 249: 1044-6. PMID 2204110 DOI: 10.1126/Science.2204110  1
1990 Hurley JH, Dean AM, Sohl JL, Koshland DE, Stroud RM. Regulation of an enzyme by phosphorylation at the active site. Science (New York, N.Y.). 249: 1012-6. PMID 2204109 DOI: 10.1126/Science.2204109  1
1989 Dean AM. Selection and neutrality in lactose operons of Escherichia coli. Genetics. 123: 441-54. PMID 2513251  1
1989 Dean AM, Lee MH, Koshland DE. Phosphorylation inactivates Escherichia coli isocitrate dehydrogenase by preventing isocitrate binding. The Journal of Biological Chemistry. 264: 20482-6. PMID 2511204  1
1988 Dean AM, Dykhuizen DE, Hartl DL. Fitness effects of amino acid replacements in the beta-galactosidase of Escherichia coli. Molecular Biology and Evolution. 5: 469-85. PMID 3143044 DOI: 10.1093/Oxfordjournals.Molbev.A040513  1
1987 Dykhuizen DE, Dean AM, Hartl DL. Metabolic flux and fitness. Genetics. 115: 25-31. PMID 3104135  1
1986 Hartl DL, Dean AM, Dykhuizen DE. The molecular biology of natural selection: reply to burton and place. Genetics. 114: 1037-9. PMID 17246353  1
1986 Dean AM, Dykhuizen DE, Hartl DL. Fitness as a function of beta-galactosidase activity in Escherichia coli. Genetical Research. 48: 1-8. PMID 3096817 DOI: 10.1017/S0016672300024587  1
1985 Hartl DL, Dykhuizen DE, Dean AM. Limits of adaptation: the evolution of selective neutrality. Genetics. 111: 655-74. PMID 3932127  1
1983 Dean AM. A simple model of mutualism American Naturalist. 121: 409-417. DOI: 10.1086/284069  1
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