Seth M. Bybee, Ph.D. - Publications

Affiliations: 
2008 University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Entomology Biology, Paleontology, Evolution and Development Biology

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Martin GJ, Lower SE, Suvorov A, Bybee SM. Molecular Evolution of Phototransduction Pathway Genes in Nocturnal and Diurnal Fireflies (Coleoptera: Lampyridae). Insects. 12. PMID 34207188 DOI: 10.3390/insects12060561  1
2021 Bybee SM, Kalkman VJ, Erickson RJ, Frandsen PB, Breinholt JW, Suvorov A, Dijkstra KB, Cordero-Rivera A, Skevington JH, Abbott JC, Sanchez Herrera M, Lemmon AR, Moriarty Lemmon E, Ware JL. Phylogeny and classification of Odonata using targeted genomics. Molecular Phylogenetics and Evolution. 107115. PMID 33609713 DOI: 10.1016/j.ympev.2021.107115  0.6
2020 Saxton NA, Powell GS, Bybee SM. Prevalence of leg regeneration in damselflies reevaluated: A case study in Coenagrionidae. Arthropod Structure & Development. 59: 100995. PMID 32977262 DOI: 10.1016/j.asd.2020.100995  0.52
2020 Saxton NA, Powell GS, Martin GJ, Bybee SM. Two new species of coastal Atyphella Olliff (Lampyridae: Luciolinae). Zootaxa. 4722: zootaxa.4722.3.4. PMID 32230625 DOI: 10.11646/Zootaxa.4722.3.4  1
2019 Diray-Arce J, Knowles A, Suvorov A, O'Brien J, Hansen C, Bybee SM, Gul B, Khan MA, Nielsen BL. Identification and evolutionary characterization of salt-responsive transcription factors in the succulent halophyte Suaeda fruticosa. Plos One. 14: e0222940. PMID 31545841 DOI: 10.1371/Journal.Pone.0222940  0.6
2018 Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, ... ... Bybee SM, et al. Firefly genomes illuminate parallel origins of bioluminescence in beetles. Elife. 7. PMID 30324905 DOI: 10.7554/Elife.36495  1
2018 Fallon TR, Lower SE, Chang C, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, ... ... Bybee SM, et al. Author response: Firefly genomes illuminate parallel origins of bioluminescence in beetles Elife. DOI: 10.7554/Elife.36495.176  1
2017 Sharkey CR, Fujimoto MS, Lord NP, Shin S, McKenna DD, Suvorov A, Martin GJ, Bybee SM. Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles. Scientific Reports. 7: 8. PMID 28127058 DOI: 10.1038/S41598-017-00061-7  1
2016 Martin GJ, Branham MA, Whiting MF, Bybee SM. Total evidence phylogeny and the evolution of adult bioluminescence in fireflies (Coleoptera: Lampyridae). Molecular Phylogenetics and Evolution. PMID 27998815 DOI: 10.1016/J.Ympev.2016.12.017  0.72
2016 Bybee S, Córdoba-Aguilar A, Duryea MC, Futahashi R, Hansson B, Lorenzo-Carballa MO, Schilder R, Stoks R, Suvorov A, Svensson EI, Swaegers J, Takahashi Y, Watts PC, Wellenreuther M. Odonata (dragonflies and damselflies) as a bridge between ecology and evolutionary genomics. Frontiers in Zoology. 13: 46. PMID 27766110 DOI: 10.1186/S12983-016-0176-7  0.6
2016 Suvorov A, Jensen NO, Sharkey CR, Fujimoto MS, Bodily P, Wightman HM, Ogden TH, Clement MJ, Bybee SM. Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata. Molecular Ecology. PMID 27758014 DOI: 10.1111/Mec.13884  0.68
2016 Fujimoto MS, Suvorov A, Jensen NO, Clement MJ, Snell Q, Bybee SM. The OGCleaner: filtering false-positive homology clusters. Bioinformatics (Oxford, England). PMID 27614349 DOI: 10.1093/Bioinformatics/Btw571  0.6
2016 Lord NP, Plimpton RL, Sharkey CR, Suvorov A, Lelito JP, Willardson BM, Bybee SM. A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae). Bmc Evolutionary Biology. 16: 107. PMID 27193495 DOI: 10.1186/S12862-016-0674-4  0.6
2016 Naegle MA, Mugleston JD, Bybee SM, Whiting MF. Reassessing the phylogenetic position of the epizoic earwigs (Insecta: Dermaptera). Molecular Phylogenetics and Evolution. 100: 382-90. PMID 27033951 DOI: 10.1016/J.Ympev.2016.03.012  0.72
2016 Fujimoto MS, Suvorov A, Jensen NO, Clement MJ, Bybee SM. Detecting false positive sequence homology: a machine learning approach. Bmc Bioinformatics. 17: 101. PMID 26911862 DOI: 10.1186/S12859-016-0955-3  0.72
2016 Mugleston J, Naegle M, Song H, Bybee SM, Ingley S, Suvorov A, Whiting MF. Reinventing the leaf: Multiple origins of leaf-like wings in katydids (Orthoptera:Tettigoniidae) Invertebrate Systematics. 30: 335-352. DOI: 10.1071/Is15055  0.72
2016 Manwaring KF, Whiting MF, Wilcox E, Bybee SM. A study of common scorpionfly (Mecoptera: Panorpidae) visual systems reveals the expression of a single opsin Organisms Diversity and Evolution. 16: 201-209. DOI: 10.1007/S13127-015-0241-7  0.72
2015 Martin GJ, Lord NP, Branham MA, Bybee SM. Review of the firefly visual system (Coleoptera: Lampyridae) and evolution of the opsin genes underlying color vision Organisms Diversity and Evolution. DOI: 10.1007/S13127-015-0212-Z  1
2015 Houston DD, Mitchell KS, Clouse JW, Maughan PJ, Curtis Creighton J, Smith AN, Bybee SM, Belk MC. SNP development in North American burying beetles (Coleoptera: Silphidae): a tool to inform conservation decisions Conservation Genetics Resources. 7: 349-352. DOI: 10.1007/S12686-015-0438-2  0.72
2014 Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, et al. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. Bmc Bioinformatics. 15: 350. PMID 25407802 DOI: 10.1186/S12859-014-0350-X  0.72
2013 Dijkstra KDB, Bechly G, Bybee SM, Dow RA, Dumont HJ, Fleck G, Garrison RW, Hämäläinen M, Kalkman VJ, Karube H, May ML, Orr AG, Paulson DR, Rehn AC, Theischinger G, et al. The classification and diversity of dragonflies and damselflies (Odonata) Zootaxa. 3703: 36-45. DOI: 10.11646/Zootaxa.3703.1.9  0.72
2012 Bybee SM, Yuan F, Ramstetter MD, Llorente-Bousquets J, Reed RD, Osorio D, Briscoe AD. UV photoreceptors and UV-yellow wing pigments in Heliconius butterflies allow a color signal to serve both mimicry and intraspecific communication. The American Naturalist. 179: 38-51. PMID 22173459 DOI: 10.1086/663192  0.72
2012 Ingley SJ, Bybee SM, Tennessen KJ, Whiting MF, Branham MA. Life on the fly: Phylogenetics and evolution of the helicopter damselflies (Odonata, Pseudostigmatidae) Zoologica Scripta. 41: 637-650. DOI: 10.1111/J.1463-6409.2012.00555.X  0.72
2012 Bybee SM, Johnson KK, Gering EJ, Whiting MF, Crandall KA. All the better to see you with: A review of odonate color vision with transcriptomic insight into the odonate eye Organisms Diversity and Evolution. 12: 241-250. DOI: 10.1007/S13127-012-0090-6  0.72
2011 Bybee SM, Bracken-Grissom H, Haynes BD, Hermansen RA, Byers RL, Clement MJ, Udall JA, Wilcox ER, Crandall KA. Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biology and Evolution. 3: 1312-23. PMID 22002916 DOI: 10.1093/Gbe/Evr106  0.72
2011 Edwards TM, Smith BK, Watts DL, Germain-Aubrey CC, Roark AM, Bybee SM, Cox CE, Hamlin HJ, Guillette LJ. Group-advantaged training of research (GATOR): A metamorphosis of mentorship Bioscience. 61: 301-311. DOI: 10.1525/Bio.2011.61.4.10  0.72
2011 Bybee SM, Bracken-Grissom HD, Hermansen RA, Clement MJ, Crandall KA, Felder DL. Directed next generation sequencing for phylogenetics: An example using Decapoda (Crustacea) Zoologischer Anzeiger. 250: 497-506. DOI: 10.1016/J.Jcz.2011.05.010  0.72
2010 Briscoe AD, Bybee SM, Bernard GD, Yuan F, Sison-Mangus MP, Reed RD, Warren AD, Llorente-Bousquets J, Chiao CC. Positive selection of a duplicated UV-sensitive visual pigment coincides with wing pigment evolution in Heliconius butterflies. Proceedings of the National Academy of Sciences of the United States of America. 107: 3628-33. PMID 20133601 DOI: 10.1073/Pnas.0910085107  0.72
2010 Bybee SM, Zaspel JM, Beucke KA, Scott CH, Smith BW, Branham MA. Are molecular data supplanting morphological data in modern phylogenetic studies? Systematic Entomology. 35: 2-5. DOI: 10.1111/J.1365-3113.2009.00496.X  0.72
2010 Briscoe AD, Bybee SM, Bernard GD, Yuan F, Sison-Mangus MP, Reed RD, Warren AD, Llorente-Bousquets J, Chiao CC. Reply to Nozawa et al.: Complementary statistical methods support positive selection of a duplicated UV opsin gene in Heliconius Proceedings of the National Academy of Sciences of the United States of America. 107: E97. DOI: 10.1073/Pnas.1004040107  0.72
2008 Bybee SM, Ogden TH, Branham MA, Whiting MF. Molecules, morphology and fossils: A comprehensive approach to odonate phylogeny and the evolution of the odonate wing Cladistics. 24: 477-514. DOI: 10.1111/J.1096-0031.2007.00191.X  0.72
2004 Bybee SM, Taylor SD, Riley Nelson C, Whiting MF. A phylogeny of robber flies (Diptera: Asilidae) at the subfamilial level: molecular evidence. Molecular Phylogenetics and Evolution. 30: 789-97. PMID 15012956 DOI: 10.1016/S1055-7903(03)00253-7  1
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