Laurent Excoffier - Publications

2001- Institute for Ecology and Evolution University of Bern, Switzerland, Bern, Bern, Switzerland 

148 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Marques DA, Lucek K, Sousa VC, Excoffier L, Seehausen O. Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications. 12: 2807. PMID 33990586 DOI: 10.1038/s41467-021-23096-x  1
2021 Choin J, Mendoza-Revilla J, Arauna LR, Cuadros-Espinoza S, Cassar O, Larena M, Ko AM, Harmant C, Laurent R, Verdu P, Laval G, Boland A, Olaso R, Deleuze JF, Valentin F, ... ... Excoffier L, et al. Genomic insights into population history and biological adaptation in Oceania. Nature. 592: 583-589. PMID 33854233 DOI: 10.1038/s41586-021-03236-5  1
2021 Yilmaz B, Mooser C, Keller I, Li H, Zimmermann J, Bosshard L, Fuhrer T, Gomez de Agüero M, Trigo NF, Tschanz-Lischer H, Limenitakis JP, Hardt WD, McCoy KD, Stecher B, Excoffier L, et al. Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell Host & Microbe. PMID 33662276 DOI: 10.1016/j.chom.2021.02.001  0.96
2021 Armstrong EE, Khan A, Taylor RW, Gouy A, Greenbaum G, Thiéry A, Kang JTL, Redondo SA, Prost S, Barsh G, Kaelin C, Phalke S, Chugani A, Gilbert M, Miquelle D, ... ... Excoffier L, et al. Recent evolutionary history of tigers highlights contrasting roles of genetic drift and selection. Molecular Biology and Evolution. PMID 33592092 DOI: 10.1093/molbev/msab032  0.96
2021 Johri P, Riall K, Becher H, Excoffier L, Charlesworth B, Jensen JD. The impact of purifying and background selection on the inference of population history: problems and prospects. Molecular Biology and Evolution. PMID 33591322 DOI: 10.1093/molbev/msab050  0.56
2021 Johri P, Riall K, Becher H, Excoffier L, Charlesworth B, Jensen JD. The impact of purifying and background selection on the inference of population history: problems and prospects. Biorxiv : the Preprint Server For Biology. PMID 33501439 DOI: 10.1101/2020.04.28.066365  0.56
2020 McGee MD, Borstein SR, Meier JI, Marques DA, Mwaiko S, Taabu A, Kishe MA, O'Meara B, Bruggmann R, Excoffier L, Seehausen O. The ecological and genomic basis of explosive adaptive radiation. Nature. PMID 32848251 DOI: 10.1038/S41586-020-2652-7  1
2020 Bosshard L, Peischl S, Ackermann M, Excoffier L. Dissection of the mutation accumulation process during bacterial range expansions. Bmc Genomics. 21: 253. PMID 32293258 DOI: 10.1186/S12864-020-6676-Z  1
2020 Gouy A, Excoffier L. Polygenic patterns of adaptive introgression in modern humans are mainly shaped by response to pathogens. Molecular Biology and Evolution. PMID 31935281 DOI: 10.1093/Molbev/Msz306  0.96
2019 Gilbert KJ, Pouyet F, Excoffier L, Peischl S. Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination. Current Biology : Cb. PMID 31866368 DOI: 10.1016/J.Cub.2019.11.063  1
2019 Marques DA, Lucek K, Sousa VC, Excoffier L, Seehausen O. Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature Communications. 10: 4240. PMID 31534121 DOI: 10.1038/S41467-019-12182-W  1
2019 Bosshard L, Peischl S, Ackermann M, Excoffier L. Mutational and selective processes involved in evolution during bacterial range expansions. Molecular Biology and Evolution. PMID 31241150 DOI: 10.1093/Molbev/Msz148  1
2019 Sikora M, Pitulko VV, Sousa VC, Allentoft ME, Vinner L, Rasmussen S, Margaryan A, de Barros Damgaard P, de la Fuente C, Renaud G, Yang MA, Fu Q, Dupanloup I, Giampoudakis K, Nogués-Bravo D, ... ... Excoffier L, et al. The population history of northeastern Siberia since the Pleistocene. Nature. PMID 31168093 DOI: 10.1038/S41586-019-1279-Z  1
2019 Kuhlwilm M, Han S, Sousa VC, Excoffier L, Marques-Bonet T. Author Correction: Ancient admixture from an extinct ape lineage into bonobos. Nature Ecology & Evolution. PMID 31089261 DOI: 10.1038/S41559-019-0919-X  1
2019 Currat M, Arenas M, Quilodran CS, Excoffier L, Ray N. SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal. Bioinformatics (Oxford, England). PMID 31077292 DOI: 10.1093/Bioinformatics/Btz311  1
2019 Kuhlwilm M, Han S, Sousa VC, Excoffier L, Marques-Bonet T. Ancient admixture from an extinct ape lineage into bonobos. Nature Ecology & Evolution. PMID 31036897 DOI: 10.1038/S41559-019-0881-7  1
2018 Gilbert KJ, Peischl S, Excoffier L. Mutation load dynamics during environmentally-driven range shifts. Plos Genetics. 14: e1007450. PMID 30265675 DOI: 10.1371/Journal.Pgen.1007450  1
2018 Pouyet F, Aeschbacher S, Thiéry A, Excoffier L. Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences. Elife. 7. PMID 30125248 DOI: 10.7554/Elife.36317  0.72
2018 Meier JI, Marques DA, Wagner CE, Excoffier L, Seehausen O. Genomics of parallel ecological speciation in Lake Victoria cichlids. Molecular Biology and Evolution. PMID 29617828 DOI: 10.1093/Molbev/Msy051  1
2018 Pfeifer SP, Laurent S, Sousa VC, Linnen CR, Foll M, Excoffier L, Hoekstra HE, Jensen JD. The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. Molecular Biology and Evolution. PMID 29346646 DOI: 10.1093/Molbev/Msy004  1
2018 Popadin K, Peischl S, Garieri M, Sailani MR, Letourneau A, Santoni F, Lukowski SW, Bazykin GA, Nikolaev S, Meyer D, Excoffier L, Reymond A, Antonarakis SE. Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection. Genome Research. 28: 1-10. PMID 29237728 DOI: 10.1101/Gr.228411.117  1
2018 Pouyet F, Aeschbacher S, Thiéry A, Excoffier L. Author response: Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences Elife. DOI: 10.7554/Elife.36317.039  0.72
2017 Peischl S, Dupanloup I, Foucal A, Jomphe M, Bruat V, Grenier JC, Gouy A, Gilbert KJ, Gbeha E, Bosshard L, Hip-Ki E, Agbessi M, Hodgkinson A, Vézina H, Awadalla P, ... Excoffier L, et al. Relaxed Selection During a Recent Human Expansion. Genetics. PMID 29187508 DOI: 10.1534/Genetics.117.300551  1
2017 Sikora M, Seguin-Orlando A, Sousa VC, Albrechtsen A, Korneliussen T, Ko A, Rasmussen S, Dupanloup I, Nigst PR, Bosch MD, Renaud G, Allentoft ME, Margaryan A, Vasilyev SV, Veselovskaya EV, ... ... Excoffier L, et al. Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science (New York, N.Y.). PMID 28982795 DOI: 10.1126/Science.Aao1807  1
2017 Gouy A, Daub JT, Excoffier L. Detecting gene subnetworks under selection in biological pathways. Nucleic Acids Research. 45: e149. PMID 28934485 DOI: 10.1093/Nar/Gkx626  0.96
2017 Bosshard L, Dupanloup I, Tenaillon O, Bruggmann R, Ackermann M, Peischl S, Excoffier L. Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics. PMID 28821588 DOI: 10.1534/Genetics.117.300144  1
2017 Meier JI, Marques DA, Mwaiko S, Wagner CE, Excoffier L, Seehausen O. Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature Communications. 8: 14363. PMID 28186104 DOI: 10.1038/Ncomms14363  1
2016 de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, ... ... Excoffier L, et al. Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science (New York, N.Y.). 354: 477-481. PMID 27789843 DOI: 10.1126/Science.Aag2602  1
2016 Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, ... ... Excoffier L, et al. A genomic history of Aboriginal Australia. Nature. PMID 27654914 DOI: 10.1038/Nature18299  1
2016 Meier JI, Sousa VC, Marques DA, Selz OM, Wagner CE, Excoffier L, Seehausen O. Demographic modeling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology. PMID 27613570 DOI: 10.1111/Mec.13838  1
2016 Peischl S, Dupanloup I, Bosshard L, Excoffier L. Genetic surfing in human populations: from genes to genomes. Current Opinion in Genetics & Development. 41: 53-61. PMID 27584859 DOI: 10.1016/J.Gde.2016.08.003  1
2016 Amorim CE, Hofer T, Ray N, Foll M, Ruiz-Linares A, Excoffier L. Long-distance dispersal suppresses introgression of local alleles during range expansions. Heredity. PMID 27577693 DOI: 10.1038/Hdy.2016.68  1
2016 Marques DA, Lucek K, Haesler MP, Feller AF, Meier JI, Wagner CE, Excoffier L, Seehausen O. Genomic landscape of early ecological speciation initiated by selection on nuptial color. Molecular Ecology. PMID 27483035 DOI: 10.1111/Mec.13774  1
2016 Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, ... ... Excoffier L, et al. Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature Communications. 7: 11693. PMID 27243207 DOI: 10.1038/Ncomms11693  1
2016 Marques DA, Lucek K, Meier JI, Mwaiko S, Wagner CE, Excoffier L, Seehausen O. Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. Plos Genetics. 12: e1005887. PMID 26925837 DOI: 10.1371/Journal.Pgen.1005887  1
2015 Henn BM, Botigué LR, Peischl S, Dupanloup I, Lipatov M, Maples BK, Martin AR, Musharoff S, Cann H, Snyder MP, Excoffier L, Kidd JM, Bustamante CD. Distance from sub-Saharan Africa predicts mutational load in diverse human genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 26712023 DOI: 10.1073/Pnas.1510805112  1
2015 Alves I, Arenas M, Currat M, Hanulova AS, Sousa VC, Ray N, Excoffier L. Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution. PMID 26637555 DOI: 10.1093/Molbev/Msv332  1
2015 Daub JT, Dupanloup I, Robinson-Rechavi M, Excoffier L. Inference of Evolutionary Forces Acting on Human Biological Pathways. Genome Biology and Evolution. 7: 1546-58. PMID 25971280 DOI: 10.1093/Gbe/Evv083  1
2015 Amorim CE, Daub JT, Salzano FM, Foll M, Excoffier L. Detection of convergent genome-wide signals of adaptation to tropical forests in humans. Plos One. 10: e0121557. PMID 25849546 DOI: 10.1371/Journal.Pone.0121557  0.96
2015 Peischl S, Kirkpatrick M, Excoffier L. Expansion load and the evolutionary dynamics of a species range. The American Naturalist. 185: E81-93. PMID 25811091 DOI: 10.1086/680220  1
2015 Peischl S, Excoffier L. Expansion load: recessive mutations and the role of standing genetic variation. Molecular Ecology. 24: 2084-94. PMID 25786336 DOI: 10.1111/Mec.13154  1
2014 Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AM, ... ... Excoffier L, et al. Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: E5661-9. PMID 25512547 DOI: 10.1073/Pnas.1416991111  1
2014 Fischer MC, Foll M, Heckel G, Excoffier L. Continental-scale footprint of balancing and positive selection in a small rodent (Microtus arvalis). Plos One. 9: e112332. PMID 25383542 DOI: 10.1371/Journal.Pone.0112332  1
2014 Foll M, Gaggiotti OE, Daub JT, Vatsiou A, Excoffier L. Widespread signals of convergent adaptation to high altitude in Asia and america. American Journal of Human Genetics. 95: 394-407. PMID 25262650 DOI: 10.1016/J.Ajhg.2014.09.002  1
2014 Sousa V, Peischl S, Excoffier L. Impact of range expansions on current human genomic diversity. Current Opinion in Genetics & Development. 29: 22-30. PMID 25156518 DOI: 10.1016/J.Gde.2014.07.007  1
2014 Perry GH, Foll M, Grenier JC, Patin E, Nédélec Y, Pacis A, Barakatt M, Gravel S, Zhou X, Nsobya SL, Excoffier L, Quintana-Murci L, Dominy NJ, Barreiro LB. Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences of the United States of America. 111: E3596-603. PMID 25136101 DOI: 10.1073/Pnas.1402875111  1
2014 Lischer HE, Excoffier L, Heckel G. Ignoring heterozygous sites biases phylogenomic estimates of divergence times: implications for the evolutionary history of microtus voles. Molecular Biology and Evolution. 31: 817-31. PMID 24371090 DOI: 10.1093/Molbev/Mst271  1
2014 Mona S, Ray N, Arenas M, Excoffier L. Genetic consequences of habitat fragmentation during a range expansion. Heredity. 112: 291-9. PMID 24149654 DOI: 10.1038/Hdy.2013.105  1
2013 Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M. Robust demographic inference from genomic and SNP data. Plos Genetics. 9: e1003905. PMID 24204310 DOI: 10.1371/Journal.Pgen.1003905  1
2013 Peischl S, Dupanloup I, Kirkpatrick M, Excoffier L. On the accumulation of deleterious mutations during range expansions. Molecular Ecology. 22: 5972-82. PMID 24102784 DOI: 10.1111/Mec.12524  1
2013 Martínková N, Barnett R, Cucchi T, Struchen R, Pascal M, Pascal M, Fischer MC, Higham T, Brace S, Ho SY, Quéré JP, O'Higgins P, Excoffier L, Heckel G, Hoelzel AR, et al. Divergent evolutionary processes associated with colonization of offshore islands. Molecular Ecology. 22: 5205-20. PMID 23998800 DOI: 10.1111/Mec.12462  1
2013 Daub JT, Hofer T, Cutivet E, Dupanloup I, Quintana-Murci L, Robinson-Rechavi M, Excoffier L. Evidence for polygenic adaptation to pathogens in the human genome. Molecular Biology and Evolution. 30: 1544-58. PMID 23625889 DOI: 10.1093/Molbev/Mst080  1
2013 Arenas M, François O, Currat M, Ray N, Excoffier L. Influence of admixture and paleolithic range contractions on current European diversity gradients. Molecular Biology and Evolution. 30: 57-61. PMID 22923464 DOI: 10.1093/Molbev/Mss203  1
2012 Pimenoff VN, Laval G, Comas D, Palo JU, Gut I, Cann H, Excoffier L, Sajantila A. Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates. Pharmacogenetics and Genomics. 22: 846-57. PMID 23089684 DOI: 10.1097/Fpc.0B013E32835A3A6D  1
2012 Alves I, Srámková Hanulová A, Foll M, Excoffier L. Genomic data reveal a complex making of humans. Plos Genetics. 8: e1002837. PMID 22829785 DOI: 10.1371/Journal.Pgen.1002837  0.92
2012 Reich D, Patterson N, Campbell D, Tandon A, Mazieres S, Ray N, Parra MV, Rojas W, Duque C, Mesa N, García LF, Triana O, Blair S, Maestre A, Dib JC, ... ... Excoffier L, et al. Reconstructing Native American population history. Nature. 488: 370-4. PMID 22801491 DOI: 10.1038/Nature11258  1
2012 Caetano S, Currat M, Pennington RT, Prado D, Excoffier L, Naciri Y. Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae). Molecular Ecology. 21: 2743-60. PMID 22509817 DOI: 10.1111/J.1365-294X.2012.05562.X  1
2012 Hofer T, Foll M, Excoffier L. Evolutionary forces shaping genomic islands of population differentiation in humans. Bmc Genomics. 13: 107. PMID 22439654 DOI: 10.1186/1471-2164-13-107  0.92
2012 Slatkin M, Excoffier L. Serial founder effects during range expansion: a spatial analog of genetic drift. Genetics. 191: 171-81. PMID 22367031 DOI: 10.1534/Genetics.112.139022  1
2012 Lischer HE, Excoffier L. PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics (Oxford, England). 28: 298-9. PMID 22110245 DOI: 10.1093/Bioinformatics/Btr642  1
2012 Arenas M, Ray N, Currat M, Excoffier L. Consequences of range contractions and range shifts on molecular diversity. Molecular Biology and Evolution. 29: 207-18. PMID 21778191 DOI: 10.1093/Molbev/Msr187  1
2011 Moreau C, Bhérer C, Vézina H, Jomphe M, Labuda D, Excoffier L. Deep human genealogies reveal a selective advantage to be on an expanding wave front. Science (New York, N.Y.). 334: 1148-50. PMID 22052972 DOI: 10.1126/Science.1212880  0.6
2011 Currat M, Excoffier L. Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences of the United States of America. 108: 15129-34. PMID 21911389 DOI: 10.1073/Pnas.1107450108  1
2011 Bittner D, Cossins AR, Segner H, Excoffier L, Largiadèr CR. Identification of candidate genes and physiological pathways involved in gonad deformation in whitefish (Coregonus spp.) from Lake Thun, Switzerland. International Journal of Environmental Research and Public Health. 8: 2706-33. PMID 21845154 DOI: 10.3390/Ijerph8072706  0.6
2011 Excoffier L, Foll M. fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics (Oxford, England). 27: 1332-4. PMID 21398675 DOI: 10.1093/Bioinformatics/Btr124  0.92
2011 Fischer MC, Foll M, Excoffier L, Heckel G. Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology. 20: 1450-62. PMID 21352386 DOI: 10.1111/J.1365-294X.2011.05015.X  1
2011 Laurent SJ, Werzner A, Excoffier L, Stephan W. Approximate Bayesian analysis of Drosophila melanogaster polymorphism data reveals a recent colonization of Southeast Asia. Molecular Biology and Evolution. 28: 2041-51. PMID 21300986 DOI: 10.1093/Molbev/Msr031  1
2010 Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, ... ... Excoffier L, et al. In defence of model-based inference in phylogeography. Molecular Ecology. 19: 436-446. PMID 29284924 DOI: 10.1111/J.1365-294X.2009.04515.X  0.92
2010 Ray N, Excoffier L. A first step towards inferring levels of long-distance dispersal during past expansions. Molecular Ecology Resources. 10: 902-14. PMID 21565100 DOI: 10.1111/J.1755-0998.2010.02881.X  1
2010 Estoup A, Baird SJ, Ray N, Currat M, Cornuet JM, Santos F, Beaumont MA, Excoffier L. Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Molecular Ecology Resources. 10: 886-901. PMID 21565099 DOI: 10.1111/J.1755-0998.2010.02882.X  1
2010 Excoffier L, Lischer HE. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources. 10: 564-7. PMID 21565059 DOI: 10.1111/J.1755-0998.2010.02847.X  1
2010 Ray N, Currat M, Foll M, Excoffier L. SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics (Oxford, England). 26: 2993-4. PMID 20956243 DOI: 10.1093/Bioinformatics/Btq579  1
2010 Yang NN, Mazières S, Bravi C, Ray N, Wang S, Burley MW, Bedoya G, Rojas W, Parra MV, Molina JA, Gallo C, Poletti G, Hill K, Hurtado AM, Petzl-Erler ML, ... ... Excoffier L, et al. Contrasting Patterns of Nuclear and mtDNA Diversity in Native American Populations Annals of Human Genetics. 74: 525-538. PMID 20887376 DOI: 10.1111/J.1469-1809.2010.00608.X  1
2010 Foll M, Fischer MC, Heckel G, Excoffier L. Estimating population structure from AFLP amplification intensity. Molecular Ecology. 19: 4638-47. PMID 20874760 DOI: 10.1111/J.1365-294X.2010.04820.X  1
2010 Fink S, Fischer MC, Excoffier L, Heckel G. Genomic scans support repetitive continental colonization events during the rapid radiation of voles (Rodentia: Microtus): the utility of AFLPs versus mitochondrial and nuclear sequence markers. Systematic Biology. 59: 548-72. PMID 20834011 DOI: 10.1093/Sysbio/Syq042  1
2010 Peter BM, Wegmann D, Excoffier L. Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Molecular Ecology. 19: 4648-60. PMID 20735743 DOI: 10.1111/J.1365-294X.2010.04783.X  1
2010 Bittner D, Excoffier L, Largiadèr CR. Patterns of morphological changes and hybridization between sympatric whitefish morphs (Coregonus spp.) in a Swiss lake: a role for eutrophication? Molecular Ecology. 19: 2152-67. PMID 20550636 DOI: 10.1111/J.1365-294X.2010.04623.X  0.6
2010 Wegmann D, Leuenberger C, Neuenschwander S, Excoffier L. ABCtoolbox: a versatile toolkit for approximate Bayesian computations. Bmc Bioinformatics. 11: 116. PMID 20202215 DOI: 10.1186/1471-2105-11-116  1
2010 Wegmann D, Excoffier L. Bayesian inference of the demographic history of chimpanzees. Molecular Biology and Evolution. 27: 1425-35. PMID 20118191 DOI: 10.1093/Molbev/Msq028  1
2010 Franois O, Currat M, Ray N, Han E, Excoffier L, Novembre J. Principal component analysis under population genetic models of range expansion and admixture Molecular Biology and Evolution. 27: 1257-1268. PMID 20097660 DOI: 10.1093/Molbev/Msq010  1
2010 Ray N, Wegmann D, Fagundes NJ, Wang S, Ruiz-Linares A, Excoffier L. A statistical evaluation of models for the initial settlement of the american continent emphasizes the importance of gene flow with Asia. Molecular Biology and Evolution. 27: 337-45. PMID 19805438 DOI: 10.1093/Molbev/Msp238  1
2010 Henle K, Kunin W, Schweiger O, Schmeller DS, Grobelnik V, Matsinos Y, Pantis J, Penev L, Potts SG, Ring I, Similä J, Tzanopoulos J, Van Den Hove S, Baguette M, Clobert J, ... Excoffier L, et al. Securing the conservation of biodiversity across administrative levels and spatial, temporal, and ecological scales - Research needs and approaches of the SCALES project Gaia. 19: 187-193. DOI: 10.14512/Gaia.19.3.8  1
2010 Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, ... ... Excoffier L, et al. In defence of model-based inference in phylogeography Molecular Ecology. 19: 436-446. DOI: 10.1111/j.1365-294X.2009.04515.x  1
2009 Ray N, Excoffier L. Inferring past demography using spatially explicit population genetic models. Human Biology. 81: 141-57. PMID 19943741 DOI: 10.3378/027.081.0303  1
2009 Poloni ES, Naciri Y, Bucho R, Niba R, Kervaire B, Excoffier L, Langaney A, Sanchez-Mazas A. Genetic evidence for complexity in ethnic differentiation and history in East Africa. Annals of Human Genetics. 73: 582-600. PMID 19706029 DOI: 10.1111/J.1469-1809.2009.00541.X  0.96
2009 Excoffier L, Hofer T, Foll M. Detecting loci under selection in a hierarchically structured population. Heredity. 103: 285-98. PMID 19623208 DOI: 10.1038/Hdy.2009.74  0.92
2009 Wegmann D, Leuenberger C, Excoffier L. Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood. Genetics. 182: 1207-18. PMID 19506307 DOI: 10.1534/Genetics.109.102509  1
2009 Hofer T, Ray N, Wegmann D, Excoffier L. Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection. Annals of Human Genetics. 73: 95-108. PMID 19040659 DOI: 10.1111/J.1469-1809.2008.00489.X  1
2008 Wegmann D, Dupanloup I, Excoffier L. Width of gene expression profile drives alternative splicing. Plos One. 3: e3587. PMID 18974852 DOI: 10.1371/Journal.Pone.0003587  1
2008 Giger T, Excoffier L, Amstutz U, Day PJ, Champigneulle A, Hansen MM, Kelso J, Largiadèr CR. Population transcriptomics of life-history variation in the genus Salmo. Molecular Ecology. 17: 3095-108. PMID 18522696 DOI: 10.1111/J.1365-294X.2008.03820.X  0.6
2008 Excoffier L, Ray N. Surfing during population expansions promotes genetic revolutions and structuration. Trends in Ecology & Evolution. 23: 347-51. PMID 18502536 DOI: 10.1016/J.Tree.2008.04.004  1
2008 Currat M, Ruedi M, Petit RJ, Excoffier L. The hidden side of invasions: massive introgression by local genes. Evolution; International Journal of Organic Evolution. 62: 1908-20. PMID 18452573 DOI: 10.1111/J.1558-5646.2008.00413.X  1
2008 Wang S, Ray N, Rojas W, Parra MV, Bedoya G, Gallo C, Poletti G, Mazzotti G, Hill K, Hurtado AM, Camrena B, Nicolini H, Klitz W, Barrantes R, Molina JA, ... ... Excoffier L, et al. Geographic patterns of genome admixture in latin American mestizos Plos Genetics. 4. PMID 18369456 DOI: 10.1371/Journal.Pgen.1000037  1
2008 Ruedi M, Walter S, Fischer MC, Scaravelli D, Excoffier L, Heckel G. Italy as a major Ice Age refuge area for the bat Myotis myotis (Chiroptera: Vespertilionidae) in Europe. Molecular Ecology. 17: 1801-14. PMID 18331245 DOI: 10.1111/J.1365-294X.2008.03702.X  1
2008 Neuenschwander S, Largiadèr CR, Ray N, Currat M, Vonlanthen P, Excoffier L. Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology. 17: 757-72. PMID 18194169 DOI: 10.1111/J.1365-294X.2007.03621.X  1
2008 Fagundes NJR, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL, Excoffier L. Reply to Garrigan and Hammer: Ancient lineages and assimilation [2] Proceedings of the National Academy of Sciences of the United States of America. 105: E4. DOI: 10.1073/Pnas.0711261105  1
2007 Wang S, Lewis CM, Jakobsson M, Ramachandran S, Ray N, Bedoya G, Rojas W, Parra MV, Molina JA, Gallo C, Mazzotti G, Poletti G, Hill K, Hurtado AM, Labuda D, ... ... Excoffier L, et al. Genetic variation and population structure in native Americans. Plos Genetics. 3: e185. PMID 18039031 DOI: 10.1371/Journal.Pgen.0030185  1
2007 Fagundes NJ, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL, Excoffier L. Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 17614-9. PMID 17978179 DOI: 10.1073/Pnas.0708280104  1
2007 Vonlanthen P, Excoffier L, Bittner D, Persat H, Neuenschwander S, Largiadèr CR. Genetic analysis of potential postglacial watershed crossings in Central Europe by the bullhead (Cottus gobio L.). Molecular Ecology. 16: 4572-84. PMID 17908217 DOI: 10.1111/J.1365-294X.2007.03531.X  1
2007 Fink S, Excoffier L, Heckel G. High variability and non-neutral evolution of the mammalian avpr1a gene. Bmc Evolutionary Biology. 7: 176. PMID 17900345 DOI: 10.1186/1471-2148-7-176  1
2007 Schweizer M, Excoffier L, Heckel G. Fine-scale genetic structure and dispersal in the common vole (Microtus arvalis). Molecular Ecology. 16: 2463-73. PMID 17561906 DOI: 10.1111/J.1365-294X.2007.03284.X  1
2006 Wegmann D, Currat M, Excoffier L. Molecular diversity after a range expansion in heterogeneous environments. Genetics. 174: 2009-20. PMID 17028329 DOI: 10.1534/Genetics.106.062851  1
2006 Berthier P, Excoffier L, Ruedi M. Recurrent replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii. Proceedings. Biological Sciences / the Royal Society. 273: 3101-3109. PMID 17018432 DOI: 10.1098/Rspb.2006.3680  1
2006 Excoffier L, Heckel G. Computer programs for population genetics data analysis: a survival guide. Nature Reviews. Genetics. 7: 745-58. PMID 16924258 DOI: 10.1038/Nrg1904  1
2006 Currat M, Excoffier L, Maddison W, Otto SP, Ray N, Whitlock MC, Yeaman S. Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science (New York, N.Y.). 313: 172; author reply 17. PMID 16840683 DOI: 10.1126/Science.1122712  1
2006 Fink S, Excoffier L, Heckel G. Mammalian monogamy is not controlled by a single gene. Proceedings of the National Academy of Sciences of the United States of America. 103: 10956-60. PMID 16832060 DOI: 10.1073/Pnas.0602380103  1
2006 Giger T, Excoffier L, Day PJ, Champigneulle A, Hansen MM, Powell R, Largiadèr CR. Life history shapes gene expression in salmonids. Current Biology : Cb. 16: R281-2. PMID 16631571 DOI: 10.1016/J.Cub.2006.03.053  0.6
2006 Drake JA, Bird C, Nemesh J, Thomas DJ, Newton-Cheh C, Reymond A, Excoffier L, Attar H, Antonarakis SE, Dermitzakis ET, Hirschhorn JN. Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nature Genetics. 38: 223-7. PMID 16380714 DOI: 10.1038/Ng1710  1
2006 Klopfstein S, Currat M, Excoffier L. The fate of mutations surfing on the wave of a range expansion. Molecular Biology and Evolution. 23: 482-90. PMID 16280540 DOI: 10.1093/Molbev/Msj057  1
2005 Excoffier L, Laval G, Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online. 1: 47-50. PMID 19325852 DOI: 10.4137/Ebo.S0  1
2005 Heckel G, Burri R, Fink S, Desmet JF, Excoffier L. Genetic structure and colonization processes in European populations of the common vole, Microtus arvalis. Evolution; International Journal of Organic Evolution. 59: 2231-42. PMID 16405166 DOI: 10.1111/J.0014-3820.2005.Tb00931.X  1
2005 Ray N, Currat M, Berthier P, Excoffier L. Recovering the geographic origin of early modern humans by realistic and spatially explicit simulations Genome Research. 15: 1161-1167. PMID 16077015 DOI: 10.1101/Gr.3708505  1
2005 Hamilton G, Stoneking M, Excoffier L. Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations Proceedings of the National Academy of Sciences of the United States of America. 102: 7476-7480. PMID 15894624 DOI: 10.1073/Pnas.0409253102  1
2005 Currat M, Excoffier L. The effect of the Neolithic expansion on European molecular diversity. Proceedings. Biological Sciences / the Royal Society. 272: 679-88. PMID 15870030 DOI: 10.1098/Rspb.2004.2999  1
2005 Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, Excoffier L. Bayesian estimation of recent migration rates after a spatial expansion. Genetics. 170: 409-17. PMID 15716508 DOI: 10.1534/Genetics.104.034199  1
2005 Excoffier L, Estoup A, Cornuet JM. Bayesian analysis of an admixture model with mutations and arbitrarily linked markers. Genetics. 169: 1727-38. PMID 15654099 DOI: 10.1534/Genetics.104.036236  0.36
2004 Currat M, Excoffier L. Modern humans did not admix with Neanderthals during their range expansion into Europe. Plos Biology. 2: e421. PMID 15562317 DOI: 10.1371/Journal.Pbio.0020421  1
2004 Fink S, Excoffier L, Heckel G. Mitochondrial gene diversity in the common vole Microtus arvalis shaped by historical divergence and local adaptations. Molecular Ecology. 13: 3501-14. PMID 15488007 DOI: 10.1111/J.1365-294X.2004.02351.X  1
2004 Laval G, Excoffier L. SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics (Oxford, England). 20: 2485-7. PMID 15117750 DOI: 10.1093/Bioinformatics/Bth264  1
2003 Excoffier L, Laval G, Balding D. Gametic phase estimation over large genomic regions using an adaptive window approach. Human Genomics. 1: 7-19. PMID 15601529 DOI: 10.1186/1479-7364-1-1-7  1
2003 Excoffier L, Hamilton G. Comment on "Genetic structure of human populations". Science (New York, N.Y.). 300: 1877; author reply 1. PMID 12817127 DOI: 10.1126/Science.1083411  0.8
2003 Ray N, Currat M, Excoffier L. Intra-deme molecular diversity in spatially expanding populations. Molecular Biology and Evolution. 20: 76-86. PMID 12519909 DOI: 10.1093/Molbev/Msg009  1
2002 Dupanloup I, Schneider S, Excoffier L. A simulated annealing approach to define the genetic structure of populations. Molecular Ecology. 11: 2571-81. PMID 12453240 DOI: 10.1046/J.1365-294X.2002.01650.X  1
2002 Cann HM, de Toma C, Cazes L, Legrand MF, Morel V, Piouffre L, Bodmer J, Bodmer WF, Bonne-Tamir B, Cambon-Thomsen A, Chen Z, Chu J, Carcassi C, Contu L, Du R, ... Excoffier L, et al. A human genome diversity cell line panel. Science (New York, N.Y.). 296: 261-2. PMID 11954565 DOI: 10.1126/Science.296.5566.261B  1
2002 Currat M, Trabuchet G, Rees D, Perrin P, Harding RM, Clegg JB, Langaney A, Excoffier L. Molecular analysis of the beta-globin gene cluster in the Niokholo Mandenka population reveals a recent origin of the beta(S) Senegal mutation. American Journal of Human Genetics. 70: 207-23. PMID 11741197 DOI: 10.1086/338304  1
2002 Petit E, Balloux F, Excoffier L. Mammalian population genetics: Why not Y? Trends in Ecology and Evolution. 17: 28-33. DOI: 10.1016/S0169-5347(01)02356-4  1
2000 Excoffier L, Novembre J, Schneider S. SIMCOAL: A general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography Journal of Heredity. 91: 506-509. PMID 11218093 DOI: 10.1093/Jhered/91.6.506  1
2000 Dupanloup de Ceuninck I, Schneider S, Langaney A, Excoffier L. Inferring the impact of linguistic boundaries on population differentiation: application to the Afro-Asiatic-Indo-European case. European Journal of Human Genetics : Ejhg. 8: 750-6. PMID 11039574 DOI: 10.1038/Sj.Ejhg.5200519  0.96
2000 Belledi M, Poloni ES, Casalotti R, Conterio F, Mikerezi I, Tagliavini J, Excoffier L. Maternal and paternal lineages in Albania and the genetic structure of Indo-European populations. European Journal of Human Genetics : Ejhg. 8: 480-6. PMID 10909846 DOI: 10.1038/Sj.Ejhg.5200443  0.8
2000 Sanchez-Mazas A, Djoulah S, Busson M, Le Monnier de Gouville I, Poirier JC, Dehay C, Charron D, Excoffier L, Schneider S, Langaney A, Dausset J, Hors J. A linkage disequilibrium map of the MHC region based on the analysis of 14 loci haplotypes in 50 French families. European Journal of Human Genetics : Ejhg. 8: 33-41. PMID 10713885 DOI: 10.1038/Sj.Ejhg.5200391  1
2000 Gaggiotti OE, Excoffier L. A simple method of removing the effect of a bottleneck and unequal population sizes on pairwise genetic distances. Proceedings. Biological Sciences / the Royal Society. 267: 81-7. PMID 10670957 DOI: 10.1098/Rspb.2000.0970  1
1999 Flint J, Bond J, Rees DC, Boyce AJ, Roberts-Thomson JM, Excoffier L, Clegg JB, Beaumont MA, Nichols RA, Harding RM. Minisatellite mutational processes reduce F(st) estimates. Human Genetics. 105: 567-76. PMID 10647891 DOI: 10.1007/S004399900185  1
1998 Excoffier L, Slatkin M. Incorporating genotypes of relatives into a test of linkage disequilibrium. American Journal of Human Genetics. 62: 171-80. PMID 9443867 DOI: 10.1086/301674  1
1997 Poloni ES, Semino O, Passarino G, Santachiara-Benerecetti AS, Dupanloup I, Langaney A, Excoffier L. Human genetic affinities for Y-chromosome P49a,f/TaqI haplotypes show strong correspondence with linguistics. American Journal of Human Genetics. 61: 1015-35. PMID 9346874 DOI: 10.1086/301602  1
1996 Aris-Brosou S, Excoffier L. The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Molecular Biology and Evolution. 13: 494-504. PMID 8742638 DOI: 10.1093/Oxfordjournals.Molbev.A025610  1
1996 Slatkin M, Excoffier L. Testing for linkage disequilibrium in genotypic data using the Expectation-Maximization algorithm. Heredity. 76: 377-83. PMID 8626222 DOI: 10.1038/Hdy.1996.55  1
1995 Poloni ES, Excoffier L, Mountain JL, Langaney A, Cavalli-Sforza LL. Nuclear DNA polymorphism in a Mandenka population from Senegal: comparison with eight other human populations. Annals of Human Genetics. 59: 43-61. PMID 7762984 DOI: 10.1111/J.1469-1809.1995.Tb01605.X  1
1995 Graven L, Passarino G, Semino O, Boursot P, Santachiara-Benerecetti S, Langaney A, Excoffier L. Evolutionary correlation between control region sequence and restriction polymorphisms in the mitochondrial genome of a large Senegalese Mandenka sample. Molecular Biology and Evolution. 12: 334-45. PMID 7700157 DOI: 10.1093/Oxfordjournals.Molbev.A040206  0.96
1995 Martinson JJ, Excoffier L, Swinburn C, Boyce AJ, Harding RM, Langaney A, Clegg JB. High diversity of α-globin haplotypes in a senegalese population, including many previously unreported variants American Journal of Human Genetics. 57: 1186-1198. PMID 7485171  1
1995 Excoffier L, Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Molecular Biology and Evolution. 12: 921-7. PMID 7476138 DOI: 10.1093/Oxfordjournals.Molbev.A040269  1
1994 Grundschober C, Sanchez-Mazas A, Excoffier L, Langaney A, Jeannet M, Tiercy JM. HLA-DPB1 DNA polymorphism in the Swiss population: linkage disequilibrium with other HLA loci and population genetic affinities. European Journal of Immunogenetics : Official Journal of the British Society For Histocompatibility and Immunogenetics. 21: 143-57. PMID 9098428 DOI: 10.1111/J.1744-313X.1994.Tb00186.X  0.96
1994 Sanchez-Mazas A, Bütler-Brunner E, Excoffier L, Ghanem N, Ben Salem M, Breguet G, Dard P, Pellegrini B, Tikkanen MJ, Langaney A. New data for AG haplotype frequencies in Caucasoid populations and selective neutrality of the AG polymorphism. Human Biology. 66: 27-48. PMID 8157263  0.96
1994 Excoffier L, Smouse PE. Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics. 136: 343-59. PMID 8138170  1
1992 Excoffier L, Smouse PE, Quattro JM. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 131: 479-91. PMID 1644282  1
1992 Tiercy JM, Sanchez-Mazas A, Excoffier L, Shi-Isaac X, Jeannet M, Mach B, Langaney A. HLA-DR polymorphism in a Senegalese Mandenka population: DNA oligotyping and population genetics of DRB1 specificities. American Journal of Human Genetics. 51: 592-608. PMID 1496990  0.96
1992 Dard P, Schreiber Y, Excoffier L, Sanchez-Mazas A, Shi-Isaac X, Epelbouin A, Langaney A, Jeannet M. [Polymorphism of HLA class I loci HLA-A, -B, -C, in the Mandenka population from eastern Senegal]. Comptes Rendus De L'AcadéMie Des Sciences. SÉRie Iii, Sciences De La Vie. 314: 573-8. PMID 1393737  0.96
1989 Excoffier L, Langaney A. Origin and differentiation of human mitochondrial DNA. American Journal of Human Genetics. 44: 73-85. PMID 2562823  0.96
1988 Bierens de Haan D, Leski M, Excoffier L, Carpentier N, Irlé C, Jeannet M. Effect of factors inhibiting HLA-DR antibodies before transplantation on kidney graft survival. Transplantation. 46: 581-4. PMID 3051565 DOI: 10.1097/00007890-198810000-00023  1
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