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Matthieu Foll - Publications

Affiliations: 
2007-2012  
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Galimberti M, Leuenberger C, Wolf B, Szilágyi SM, Foll M, Wegmann D. Detecting Selection from Linked Sites Using an F-Model. Genetics. PMID 33067324 DOI: 10.1534/genetics.120.303780  0.743
2019 Laskar RS, Muller DC, Li P, Machiela MJ, Ye Y, Gaborieau V, Foll M, Hofmann JN, Colli L, Sampson JN, Wang Z, Bacq-Daian D, Boland A, Abedi-Ardekani B, Durand G, et al. Sex specific associations in genome wide association analysis of renal cell carcinoma. European Journal of Human Genetics : Ejhg. PMID 31231134 DOI: 10.1038/S41431-019-0455-9  0.32
2019 Barrett RDH, Laurent S, Mallarino R, Pfeifer SP, Xu CCY, Foll M, Wakamatsu K, Duke-Cohan JS, Jensen JD, Hoekstra HE. Linking a mutation to survival in wild mice. Science (New York, N.Y.). 363: 499-504. PMID 30705186 DOI: 10.1126/Science.Aav3824  0.784
2018 Abelson S, Collord G, Ng SWK, Weissbrod O, Mendelson Cohen N, Niemeyer E, Barda N, Zuzarte PC, Heisler L, Sundaravadanam Y, Luben R, Hayat S, Wang TT, Zhao Z, Cirlan I, ... ... Foll M, et al. Prediction of acute myeloid leukaemia risk in healthy individuals. Nature. PMID 29988082 DOI: 10.1038/S41586-018-0317-6  0.33
2018 Pfeifer SP, Laurent S, Sousa VC, Linnen CR, Foll M, Excoffier L, Hoekstra HE, Jensen JD. The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. Molecular Biology and Evolution. PMID 29346646 DOI: 10.1093/Molbev/Msy004  0.796
2018 Leblay N, Alcala N, Marin DH, Delhomme TM, Giffon T, Ghantous A, Chabrier A, Cuenin C, Altmueller J, Durand G, Voegele C, Lorimier P, Toffart A, Derks J, Brustugun OT, ... ... Foll M, et al. Abstract 5358: Multi-omics comparative analyses of pulmonary typical carcinoids, atypical carcinoids, and large-cell neuroendocrine carcinoma Cancer Research. 78: 5358-5358. DOI: 10.1158/1538-7445.Am2018-5358  0.32
2016 Amorim CE, Hofer T, Ray N, Foll M, Ruiz-Linares A, Excoffier L. Long-distance dispersal suppresses introgression of local alleles during range expansions. Heredity. PMID 27577693 DOI: 10.1038/Hdy.2016.68  0.75
2016 Bank C, Renzette N, Liu P, Matuszewski S, Shim H, Foll M, Bolon DN, Zeldovich KB, Kowalik TF, Finberg RW, Wang JP, Jensen JD. An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy. Evolution; International Journal of Organic Evolution. PMID 27566611 DOI: 10.1111/Evo.13041  0.763
2016 Kousathanas A, Leuenberger C, Helfer J, Quinodoz M, Foll M, Wegmann D. Likelihood-Free Inference in High-Dimensional Models. Genetics. 203: 893-904. PMID 27052569 DOI: 10.1534/Genetics.116.187567  0.698
2016 Shim H, Laurent S, Matuszewski S, Foll M, Jensen JD. Detecting and Quantifying Changing Selection Intensities from Time-Sampled Polymorphism Data. G3 (Bethesda, Md.). PMID 26869618 DOI: 10.1534/G3.115.023200  0.786
2016 Jensen JD, Foll M, Bernatchez L. The past, present and future of genomic scans for selection. Molecular Ecology. 25: 1-4. PMID 26745554 DOI: 10.1111/Mec.13493  0.581
2016 Avogbe PH, Delhomme T, Leblay N, Calvez-Kelm FL, Chopard P, Gaborieau V, Scelo G, Abedi-Ardekani B, Zaridze D, Mukeria A, Byrnes G, Brennan P, Fernandez-Cuesta L, Foll M, McKay JD. Abstract 3156: NGS-based screening for TP53 mutations in circulating cell-free DNA: A first step towards early detection of lung cancers Cancer Research. 76: 3156-3156. DOI: 10.1158/1538-7445.Am2016-3156  0.304
2016 Calvez-Kelm FL, Foll M, Wozniak MB, Durand G, Chopard P, Pertesi M, Delhomme T, Holcatova I, Foretova L, Janout V, Fabianova E, Vallée MP, Brennan P, McKay JD, Byrnes G, et al. Abstract 3137: NGS-based detection of KRAS hotspot mutations in plasma cell-free DNA of pancreatic cancer cases Cancer Research. 76: 3137-3137. DOI: 10.1158/1538-7445.Am2016-3137  0.314
2015 Ormond L, Foll M, Ewing GB, Pfeifer SP, Jensen JD. Inferring the Age of a Fixed Beneficial Allele. Molecular Ecology. PMID 26576754 DOI: 10.1111/Mec.13478  0.794
2015 Mahajan S, Crisci J, Wong A, Akbarian S, Foll M, Jensen JD. Quantifying polymorphism and divergence from epigenetic data: a framework for inferring the action of selection. Frontiers in Genetics. 6: 190. PMID 26074949 DOI: 10.3389/Fgene.2015.00190  0.756
2015 Montano V, Didelot X, Foll M, Linz B, Reinhardt R, Suerbaum S, Moodley Y, Jensen JD. Worldwide Population Structure, Long-Term Demography, and Local Adaptation of Helicobacter pylori. Genetics. 200: 947-63. PMID 25995212 DOI: 10.1534/Genetics.115.176404  0.613
2015 Amorim CE, Daub JT, Salzano FM, Foll M, Excoffier L. Detection of convergent genome-wide signals of adaptation to tropical forests in humans. Plos One. 10: e0121557. PMID 25849546 DOI: 10.1371/Journal.Pone.0121557  0.798
2015 Brousseau L, Foll M, Scotti-Saintagne C, Scotti I. Neutral and adaptive drivers of microgeographic genetic divergence within continuous populations: the case of the neotropical tree Eperua falcata (Aubl.). Plos One. 10: e0121394. PMID 25807272 DOI: 10.1371/Journal.Pone.0121394  0.466
2015 Zeldovich KB, Liu P, Renzette N, Foll M, Pham ST, Venev SV, Gallagher GR, Bolon DN, Kurt-Jones EA, Jensen JD, Caffrey DR, Schiffer CA, Kowalik TF, Wang JP, Finberg RW. Positive Selection Drives Preferred Segment Combinations during Influenza Virus Reassortment. Molecular Biology and Evolution. 32: 1519-32. PMID 25713211 DOI: 10.1093/Molbev/Msv044  0.767
2015 Foll M, Shim H, Jensen JD. WFABC: a Wright-Fisher ABC-based approach for inferring effective population sizes and selection coefficients from time-sampled data. Molecular Ecology Resources. 15: 87-98. PMID 24834845 DOI: 10.1111/1755-0998.12280  0.665
2014 Bank C, Ewing GB, Ferrer-Admettla A, Foll M, Jensen JD. Thinking too positive? Revisiting current methods of population genetic selection inference. Trends in Genetics : Tig. 30: 540-6. PMID 25438719 DOI: 10.1016/J.Tig.2014.09.010  0.8
2014 Fischer MC, Foll M, Heckel G, Excoffier L. Continental-scale footprint of balancing and positive selection in a small rodent (Microtus arvalis). Plos One. 9: e112332. PMID 25383542 DOI: 10.1371/Journal.Pone.0112332  0.781
2014 Foll M, Gaggiotti OE, Daub JT, Vatsiou A, Excoffier L. Widespread signals of convergent adaptation to high altitude in Asia and america. American Journal of Human Genetics. 95: 394-407. PMID 25262650 DOI: 10.1016/J.Ajhg.2014.09.002  0.806
2014 Perry GH, Foll M, Grenier JC, Patin E, Nédélec Y, Pacis A, Barakatt M, Gravel S, Zhou X, Nsobya SL, Excoffier L, Quintana-Murci L, Dominy NJ, Barreiro LB. Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences of the United States of America. 111: E3596-603. PMID 25136101 DOI: 10.1073/Pnas.1402875111  0.653
2014 Foll M, Poh YP, Renzette N, Ferrer-Admetlla A, Bank C, Shim H, Malaspinas AS, Ewing G, Liu P, Wegmann D, Caffrey DR, Zeldovich KB, Bolon DN, Wang JP, Kowalik TF, et al. Influenza virus drug resistance: a time-sampled population genetics perspective. Plos Genetics. 10: e1004185. PMID 24586206 DOI: 10.1371/Journal.Pgen.1004185  0.774
2013 Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M. Robust demographic inference from genomic and SNP data. Plos Genetics. 9: e1003905. PMID 24204310 DOI: 10.1371/Journal.Pgen.1003905  0.814
2013 Sunnåker M, Busetto AG, Numminen E, Corander J, Foll M, Dessimoz C. Approximate Bayesian computation. Plos Computational Biology. 9: e1002803. PMID 23341757 DOI: 10.1371/Journal.Pcbi.1002803  0.38
2012 Alves I, Srámková Hanulová A, Foll M, Excoffier L. Genomic data reveal a complex making of humans. Plos Genetics. 8: e1002837. PMID 22829785 DOI: 10.1371/Journal.Pgen.1002837  0.74
2012 Hofer T, Foll M, Excoffier L. Evolutionary forces shaping genomic islands of population differentiation in humans. Bmc Genomics. 13: 107. PMID 22439654 DOI: 10.1186/1471-2164-13-107  0.677
2011 Excoffier L, Foll M. fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics (Oxford, England). 27: 1332-4. PMID 21398675 DOI: 10.1093/Bioinformatics/Btr124  0.603
2011 Fischer MC, Foll M, Excoffier L, Heckel G. Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology. 20: 1450-62. PMID 21352386 DOI: 10.1111/J.1365-294X.2011.05015.X  0.788
2010 Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, ... ... Foll M, et al. In defence of model-based inference in phylogeography. Molecular Ecology. 19: 436-446. PMID 29284924 DOI: 10.1111/J.1365-294X.2009.04515.X  0.775
2010 Gaggiotti OE, Foll M. Quantifying population structure using the F-model. Molecular Ecology Resources. 10: 821-30. PMID 21565093 DOI: 10.1111/J.1755-0998.2010.02873.X  0.658
2010 Ray N, Currat M, Foll M, Excoffier L. SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics (Oxford, England). 26: 2993-4. PMID 20956243 DOI: 10.1093/Bioinformatics/Btq579  0.81
2010 Foll M, Fischer MC, Heckel G, Excoffier L. Estimating population structure from AFLP amplification intensity. Molecular Ecology. 19: 4638-47. PMID 20874760 DOI: 10.1111/J.1365-294X.2010.04820.X  0.755
2010 Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, ... ... Foll M, et al. In defence of model-based inference in phylogeography Molecular Ecology. 19: 436-446. DOI: 10.1111/j.1365-294X.2009.04515.x  0.705
2009 Gaggiotti OE, Bekkevold D, Jørgensen HB, Foll M, Carvalho GR, Andre C, Ruzzante DE. Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: Atlantic herring as a case study. Evolution; International Journal of Organic Evolution. 63: 2939-51. PMID 19624724 DOI: 10.1111/J.1558-5646.2009.00779.X  0.703
2009 Excoffier L, Hofer T, Foll M. Detecting loci under selection in a hierarchically structured population. Heredity. 103: 285-98. PMID 19623208 DOI: 10.1038/Hdy.2009.74  0.695
2009 Guillot G, Foll M. Correcting for ascertainment bias in the inference of population structure. Bioinformatics (Oxford, England). 25: 552-4. PMID 19136550 DOI: 10.1093/Bioinformatics/Btn665  0.439
2009 Excoffier L, Foll M, Petit RJ. Genetic Consequences of Range Expansions Annual Review of Ecology, Evolution, and Systematics. 40: 481-501. DOI: 10.1146/Annurev.Ecolsys.39.110707.173414  0.639
2008 Foll M, Gaggiotti O. A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective Genetics. 180: 977-993. PMID 18780740 DOI: 10.1534/Genetics.108.092221  0.733
2008 Foll M, Beaumont MA, Gaggiotti O. An approximate Bayesian computation approach to overcome biases that arise when using amplified fragment length polymorphism markers to study population structure. Genetics. 179: 927-39. PMID 18505879 DOI: 10.1534/Genetics.107.084541  0.684
2006 Foll M, Gaggiotti O. Identifying the environmental factors that determine the genetic structure of populations Genetics. 174: 875-891. PMID 16951078 DOI: 10.1534/Genetics.106.059451  0.694
2005 Foll M, Gaggiotti OE. COLONISE: A computer program to study colonization processes in metapopulations Molecular Ecology Notes. 5: 705-707. DOI: 10.1111/J.1471-8286.2005.01030.X  0.738
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