Matthieu Foll - Publications


41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Galimberti M, Leuenberger C, Wolf B, Szilágyi SM, Foll M, Wegmann D. Detecting Selection from Linked Sites Using an F-Model. Genetics. PMID 33067324 DOI: 10.1534/genetics.120.303780  1
2019 Barrett RDH, Laurent S, Mallarino R, Pfeifer SP, Xu CCY, Foll M, Wakamatsu K, Duke-Cohan JS, Jensen JD, Hoekstra HE. Linking a mutation to survival in wild mice. Science (New York, N.Y.). 363: 499-504. PMID 30705186 DOI: 10.1126/Science.Aav3824  1
2018 Pfeifer SP, Laurent S, Sousa VC, Linnen CR, Foll M, Excoffier L, Hoekstra HE, Jensen JD. The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. Molecular Biology and Evolution. PMID 29346646 DOI: 10.1093/Molbev/Msy004  1
2016 Amorim CE, Hofer T, Ray N, Foll M, Ruiz-Linares A, Excoffier L. Long-distance dispersal suppresses introgression of local alleles during range expansions. Heredity. PMID 27577693 DOI: 10.1038/Hdy.2016.68  1
2016 Bank C, Renzette N, Liu P, Matuszewski S, Shim H, Foll M, Bolon DN, Zeldovich KB, Kowalik TF, Finberg RW, Wang JP, Jensen JD. An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy. Evolution; International Journal of Organic Evolution. PMID 27566611 DOI: 10.1111/Evo.13041  1
2016 Kousathanas A, Leuenberger C, Helfer J, Quinodoz M, Foll M, Wegmann D. Likelihood-Free Inference in High-Dimensional Models. Genetics. 203: 893-904. PMID 27052569 DOI: 10.1534/Genetics.116.187567  1
2016 Shim H, Laurent S, Matuszewski S, Foll M, Jensen JD. Detecting and Quantifying Changing Selection Intensities from Time-Sampled Polymorphism Data. G3 (Bethesda, Md.). PMID 26869618 DOI: 10.1534/G3.115.023200  1
2016 Jensen JD, Foll M, Bernatchez L. The past, present and future of genomic scans for selection. Molecular Ecology. 25: 1-4. PMID 26745554 DOI: 10.1111/Mec.13493  1
2016 Jensen JD, Foll M, Bernatchez L. The past, present and future of genomic scans for selection Molecular Ecology. 25: 1-4. DOI: 10.1111/mec.13493  1
2015 Ormond L, Foll M, Ewing GB, Pfeifer SP, Jensen JD. Inferring the Age of a Fixed Beneficial Allele. Molecular Ecology. PMID 26576754 DOI: 10.1111/Mec.13478  1
2015 Delahaye-Sourdeix M, Urayama KY, Gaborieau V, Veenstra R, Foll M, Chabrier A, Benavente Y, Nieters A, Becker N, Foretova L, Maynadie M, Staines A, Ekström Smedby K, Glimelius I, Lightfoot T, et al. A novel risk locus at 6p21.3 for Epstein-Barr virus positive Hodgkin lymphoma. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 26404960 DOI: 10.1158/1055-9965.Epi-15-0534  1
2015 Oh JE, Ohta T, Satomi K, Foll M, Durand G, McKay J, Le Calvez-Kelm F, Mittelbronn M, Brokinkel B, Paulus W, Ohgaki H. Alterations in the NF2/LATS1/LATS2/YAP Pathway in Schwannomas. Journal of Neuropathology and Experimental Neurology. 74: 952-9. PMID 26360373 DOI: 10.1097/Nen.0000000000000238  1
2015 Pertesi M, Galia P, Nazaret N, Vallée M, Garderet L, Leleu X, Avet-Loiseau H, Foll M, Byrnes G, Lachuer J, McKay JD, Dumontet C. Rare Circulating Cells in Familial Waldenström Macroglobulinemia Displaying the MYD88 L265P Mutation Are Enriched by Epstein-Barr Virus Immortalization. Plos One. 10: e0136505. PMID 26352266 DOI: 10.1371/Journal.Pone.0136505  1
2015 Mahajan S, Crisci J, Wong A, Akbarian S, Foll M, Jensen JD. Quantifying polymorphism and divergence from epigenetic data: a framework for inferring the action of selection. Frontiers in Genetics. 6: 190. PMID 26074949 DOI: 10.3389/Fgene.2015.00190  1
2015 Montano V, Didelot X, Foll M, Linz B, Reinhardt R, Suerbaum S, Moodley Y, Jensen JD. Worldwide Population Structure, Long-Term Demography, and Local Adaptation of Helicobacter pylori. Genetics. 200: 947-63. PMID 25995212 DOI: 10.1534/Genetics.115.176404  1
2015 Amorim CE, Daub JT, Salzano FM, Foll M, Excoffier L. Detection of convergent genome-wide signals of adaptation to tropical forests in humans. Plos One. 10: e0121557. PMID 25849546 DOI: 10.1371/Journal.Pone.0121557  1
2015 Brousseau L, Foll M, Scotti-Saintagne C, Scotti I. Neutral and adaptive drivers of microgeographic genetic divergence within continuous populations: the case of the neotropical tree Eperua falcata (Aubl.). Plos One. 10: e0121394. PMID 25807272 DOI: 10.1371/Journal.Pone.0121394  1
2015 Zeldovich KB, Liu P, Renzette N, Foll M, Pham ST, Venev SV, Gallagher GR, Bolon DN, Kurt-Jones EA, Jensen JD, Caffrey DR, Schiffer CA, Kowalik TF, Wang JP, Finberg RW. Positive Selection Drives Preferred Segment Combinations during Influenza Virus Reassortment. Molecular Biology and Evolution. 32: 1519-32. PMID 25713211 DOI: 10.1093/Molbev/Msv044  1
2015 Foll M, Shim H, Jensen JD. WFABC: a Wright-Fisher ABC-based approach for inferring effective population sizes and selection coefficients from time-sampled data. Molecular Ecology Resources. 15: 87-98. PMID 24834845 DOI: 10.1111/1755-0998.12280  1
2014 Bank C, Ewing GB, Ferrer-Admettla A, Foll M, Jensen JD. Thinking too positive? Revisiting current methods of population genetic selection inference. Trends in Genetics : Tig. 30: 540-6. PMID 25438719 DOI: 10.1016/J.Tig.2014.09.010  1
2014 Fischer MC, Foll M, Heckel G, Excoffier L. Continental-scale footprint of balancing and positive selection in a small rodent (Microtus arvalis). Plos One. 9: e112332. PMID 25383542 DOI: 10.1371/Journal.Pone.0112332  1
2014 Foll M, Gaggiotti OE, Daub JT, Vatsiou A, Excoffier L. Widespread signals of convergent adaptation to high altitude in Asia and america. American Journal of Human Genetics. 95: 394-407. PMID 25262650 DOI: 10.1016/J.Ajhg.2014.09.002  1
2014 Perry GH, Foll M, Grenier JC, Patin E, Nédélec Y, Pacis A, Barakatt M, Gravel S, Zhou X, Nsobya SL, Excoffier L, Quintana-Murci L, Dominy NJ, Barreiro LB. Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences of the United States of America. 111: E3596-603. PMID 25136101 DOI: 10.1073/Pnas.1402875111  1
2014 Foll M, Poh YP, Renzette N, Ferrer-Admetlla A, Bank C, Shim H, Malaspinas AS, Ewing G, Liu P, Wegmann D, Caffrey DR, Zeldovich KB, Bolon DN, Wang JP, Kowalik TF, et al. Influenza virus drug resistance: a time-sampled population genetics perspective. Plos Genetics. 10: e1004185. PMID 24586206 DOI: 10.1371/Journal.Pgen.1004185  1
2013 Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M. Robust demographic inference from genomic and SNP data. Plos Genetics. 9: e1003905. PMID 24204310 DOI: 10.1371/Journal.Pgen.1003905  1
2013 Sunnåker M, Busetto AG, Numminen E, Corander J, Foll M, Dessimoz C. Approximate Bayesian computation. Plos Computational Biology. 9: e1002803. PMID 23341757 DOI: 10.1371/Journal.Pcbi.1002803  1
2012 Alves I, Srámková Hanulová A, Foll M, Excoffier L. Genomic data reveal a complex making of humans. Plos Genetics. 8: e1002837. PMID 22829785 DOI: 10.1371/Journal.Pgen.1002837  1
2012 Hofer T, Foll M, Excoffier L. Evolutionary forces shaping genomic islands of population differentiation in humans. Bmc Genomics. 13: 107. PMID 22439654 DOI: 10.1186/1471-2164-13-107  1
2011 Excoffier L, Foll M. fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics (Oxford, England). 27: 1332-4. PMID 21398675 DOI: 10.1093/Bioinformatics/Btr124  1
2011 Fischer MC, Foll M, Excoffier L, Heckel G. Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology. 20: 1450-62. PMID 21352386 DOI: 10.1111/J.1365-294X.2011.05015.X  1
2010 Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, ... ... Foll M, et al. In defence of model-based inference in phylogeography. Molecular Ecology. 19: 436-446. PMID 29284924 DOI: 10.1111/J.1365-294X.2009.04515.X  1
2010 Gaggiotti OE, Foll M. Quantifying population structure using the F-model. Molecular Ecology Resources. 10: 821-30. PMID 21565093 DOI: 10.1111/J.1755-0998.2010.02873.X  1
2010 Ray N, Currat M, Foll M, Excoffier L. SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics (Oxford, England). 26: 2993-4. PMID 20956243 DOI: 10.1093/Bioinformatics/Btq579  1
2010 Foll M, Fischer MC, Heckel G, Excoffier L. Estimating population structure from AFLP amplification intensity. Molecular Ecology. 19: 4638-47. PMID 20874760 DOI: 10.1111/J.1365-294X.2010.04820.X  1
2010 Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, ... ... Foll M, et al. In defence of model-based inference in phylogeography Molecular Ecology. 19: 436-446. DOI: 10.1111/j.1365-294X.2009.04515.x  1
2009 Gaggiotti OE, Bekkevold D, Jørgensen HB, Foll M, Carvalho GR, Andre C, Ruzzante DE. Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: Atlantic herring as a case study. Evolution; International Journal of Organic Evolution. 63: 2939-51. PMID 19624724 DOI: 10.1111/J.1558-5646.2009.00779.X  1
2009 Excoffier L, Hofer T, Foll M. Detecting loci under selection in a hierarchically structured population. Heredity. 103: 285-98. PMID 19623208 DOI: 10.1038/Hdy.2009.74  1
2008 Foll M, Gaggiotti O. A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective Genetics. 180: 977-993. PMID 18780740 DOI: 10.1534/Genetics.108.092221  1
2008 Foll M, Beaumont MA, Gaggiotti O. An approximate Bayesian computation approach to overcome biases that arise when using amplified fragment length polymorphism markers to study population structure. Genetics. 179: 927-39. PMID 18505879 DOI: 10.1534/Genetics.107.084541  1
2006 Foll M, Gaggiotti O. Identifying the environmental factors that determine the genetic structure of populations Genetics. 174: 875-891. PMID 16951078 DOI: 10.1534/Genetics.106.059451  1
2005 Foll M, Gaggiotti OE. COLONISE: A computer program to study colonization processes in metapopulations Molecular Ecology Notes. 5: 705-707. DOI: 10.1111/J.1471-8286.2005.01030.X  1
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