Michael Harms, PhD - Publications

Affiliations: 
University of Oregon, Eugene, OR, United States 

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Lim SA, Hart KM, Harms MJ, Marqusee S. Evolutionary trend toward kinetic stability in the folding trajectory of RNases H. Proceedings of the National Academy of Sciences of the United States of America. PMID 27799545 DOI: 10.1073/pnas.1611781113  0.48
2016 Eick GN, Bridgham JT, Anderson DP, Harms MJ, Thornton JW. Robustness of reconstructed ancestral protein functions to statistical uncertainty. Molecular Biology and Evolution. PMID 27795231 DOI: 10.1093/molbev/msw223  0.72
2016 Wheeler LC, Lim SA, Marqusee S, Harms MJ. The thermostability and specificity of ancient proteins. Current Opinion in Structural Biology. 38: 37-43. PMID 27288744 DOI: 10.1016/j.sbi.2016.05.015  0.48
2014 Hart KM, Harms MJ, Schmidt BH, Elya C, Thornton JW, Marqusee S. Thermodynamic system drift in protein evolution. Plos Biology. 12: e1001994. PMID 25386647 DOI: 10.1371/journal.pbio.1001994  0.72
2014 Harms MJ, Thornton JW. Historical contingency and its biophysical basis in glucocorticoid receptor evolution. Nature. 512: 203-7. PMID 24930765 DOI: 10.1038/nature13410  0.72
2013 Harms MJ, Thornton JW. Evolutionary biochemistry: revealing the historical and physical causes of protein properties. Nature Reviews. Genetics. 14: 559-71. PMID 23864121 DOI: 10.1038/nrg3540  0.72
2013 Harms MJ, Eick GN, Goswami D, Colucci JK, Griffin PR, Ortlund EA, Thornton JW. Biophysical mechanisms for large-effect mutations in the evolution of steroid hormone receptors. Proceedings of the National Academy of Sciences of the United States of America. 110: 11475-80. PMID 23798447 DOI: 10.1073/pnas.1303930110  0.72
2013 Williams SG, Harms MJ, Hall KB. Resurrection of an Urbilaterian U1A/U2B″/SNF protein. Journal of Molecular Biology. 425: 3846-62. PMID 23796518 DOI: 10.1016/j.jmb.2013.05.031  0.72
2012 Eick GN, Colucci JK, Harms MJ, Ortlund EA, Thornton JW. Evolution of minimal specificity and promiscuity in steroid hormone receptors. Plos Genetics. 8: e1003072. PMID 23166518 DOI: 10.1371/journal.pgen.1003072  0.72
2011 Harms MJ, Schlessman JL, Sue GR, García-Moreno B. Arginine residues at internal positions in a protein are always charged. Proceedings of the National Academy of Sciences of the United States of America. 108: 18954-9. PMID 22080604 DOI: 10.1073/pnas.1104808108  0.72
2010 Bridgham JT, Eick GN, Larroux C, Deshpande K, Harms MJ, Gauthier ME, Ortlund EA, Degnan BM, Thornton JW. Protein evolution by molecular tinkering: diversification of the nuclear receptor superfamily from a ligand-dependent ancestor. Plos Biology. 8. PMID 20957188 DOI: 10.1371/journal.pbio.1000497  0.72
2010 Harms MJ, Thornton JW. Analyzing protein structure and function using ancestral gene reconstruction. Current Opinion in Structural Biology. 20: 360-6. PMID 20413295 DOI: 10.1016/j.sbi.2010.03.005  0.72
2010 Hays FA, Teegarden A, Jones ZJR, Harms M, Raup D, Watson J, Cavaliere E, Ho PS. How sequence defines structure: A crystallographic map of DNA structure and conformation (Proceedings of the National Academy of Sciences of the United States of America (2005) 102 (7157-7162) DOI: 10.1073/pnas.0409455102) Proceedings of the National Academy of Sciences of the United States of America. 107: 4486. DOI: 10.1073/pnas.1000618107  0.72
2009 Harms MJ, Castañeda CA, Schlessman JL, Sue GR, Isom DG, Cannon BR, García-Moreno E B. The pK(a) values of acidic and basic residues buried at the same internal location in a protein are governed by different factors. Journal of Molecular Biology. 389: 34-47. PMID 19324049 DOI: 10.1016/j.jmb.2009.03.039  0.72
2008 Harms MJ, Schlessman JL, Chimenti MS, Sue GR, Damjanović A, García-Moreno B. A buried lysine that titrates with a normal pKa: role of conformational flexibility at the protein-water interface as a determinant of pKa values. Protein Science : a Publication of the Protein Society. 17: 833-45. PMID 18369193 DOI: 10.1110/ps.073397708  0.72
2005 Hays FA, Teegarden A, Jones ZJ, Harms M, Raup D, Watson J, Cavaliere E, Ho PS. How sequence defines structure: a crystallographic map of DNA structure and conformation. Proceedings of the National Academy of Sciences of the United States of America. 102: 7157-62. PMID 15870206 DOI: 10.1073/pnas.0409455102  0.72
2004 Harms MJ, Wilmarth PA, Kapfer DM, Steel EA, David LL, Bächinger HP, Lampi KJ. Laser light-scattering evidence for an altered association of beta B1-crystallin deamidated in the connecting peptide. Protein Science : a Publication of the Protein Society. 13: 678-86. PMID 14978307 DOI: 10.1110/ps.03427504  0.72
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