Michael Harms, PhD - Publications

Affiliations: 
University of Oregon, Eugene, OR, United States 

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Jain R, Muneeruddin K, Anderson J, Harms MJ, Shaffer SA, Matthews CR. A conserved folding nucleus sculpts the free energy landscape of bacterial and archaeal orthologs from a divergent TIM barrel family. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33875592 DOI: 10.1073/pnas.2019571118  0.347
2021 Nixon CF, Lim SA, Sailer ZR, Zheludev IN, Gee CL, Kelch BA, Harms MJ, Marqusee S. Exploring the Evolutionary History of Kinetic Stability in the α-Lytic Protease Family. Biochemistry. PMID 33433210 DOI: 10.1021/acs.biochem.0c00720  0.313
2019 Nixon C, Lim SA, Harms M, Marqusee S. The Effect of Input Set to Consensus Derived Proteins and their Relationship to Ancestral Proteins Biophysical Journal. 116: 335a-336a. DOI: 10.1016/J.Bpj.2018.11.1828  0.426
2018 Nixon C, Lim SA, Sailer Z, Harms M, Marqusee S. Using Ancestral Proteins to Probe the Thermodynamic and Kinetic Properties of the Alpha-Lytic Protease Family Biophysical Journal. 114: 580a. DOI: 10.1016/J.Bpj.2017.11.3173  0.354
2016 Lim SA, Hart KM, Harms MJ, Marqusee S. Evolutionary trend toward kinetic stability in the folding trajectory of RNases H. Proceedings of the National Academy of Sciences of the United States of America. PMID 27799545 DOI: 10.1073/Pnas.1611781113  0.399
2016 Eick GN, Bridgham JT, Anderson DP, Harms MJ, Thornton JW. Robustness of reconstructed ancestral protein functions to statistical uncertainty. Molecular Biology and Evolution. PMID 27795231 DOI: 10.1093/Molbev/Msw223  0.614
2016 Wheeler LC, Lim SA, Marqusee S, Harms MJ. The thermostability and specificity of ancient proteins. Current Opinion in Structural Biology. 38: 37-43. PMID 27288744 DOI: 10.1016/J.Sbi.2016.05.015  0.426
2016 Lim SA, Bolin ER, Harms MJ, Hart KM, Thornton JW, Marqusee S. Ancestral Sequence Reconstruction Reveals the Evolutionary History of the Folding Pathway and Landscape of Ribonucleases H Biophysical Journal. 110: 391a. DOI: 10.1016/J.Bpj.2015.11.2111  0.613
2014 Hart KM, Harms MJ, Schmidt BH, Elya C, Thornton JW, Marqusee S. Thermodynamic system drift in protein evolution. Plos Biology. 12: e1001994. PMID 25386647 DOI: 10.1371/Journal.Pbio.1001994  0.608
2014 Harms MJ, Thornton JW. Historical contingency and its biophysical basis in glucocorticoid receptor evolution. Nature. 512: 203-7. PMID 24930765 DOI: 10.1038/Nature13410  0.647
2013 Harms MJ, Thornton JW. Evolutionary biochemistry: revealing the historical and physical causes of protein properties. Nature Reviews. Genetics. 14: 559-71. PMID 23864121 DOI: 10.1038/Nrg3540  0.558
2013 Harms MJ, Eick GN, Goswami D, Colucci JK, Griffin PR, Ortlund EA, Thornton JW. Biophysical mechanisms for large-effect mutations in the evolution of steroid hormone receptors. Proceedings of the National Academy of Sciences of the United States of America. 110: 11475-80. PMID 23798447 DOI: 10.1073/Pnas.1303930110  0.643
2013 Williams SG, Harms MJ, Hall KB. Resurrection of an Urbilaterian U1A/U2B″/SNF protein. Journal of Molecular Biology. 425: 3846-62. PMID 23796518 DOI: 10.1016/J.Jmb.2013.05.031  0.355
2012 Eick GN, Colucci JK, Harms MJ, Ortlund EA, Thornton JW. Evolution of minimal specificity and promiscuity in steroid hormone receptors. Plos Genetics. 8: e1003072. PMID 23166518 DOI: 10.1371/Journal.Pgen.1003072  0.607
2011 Schlessman JL, Khangulov VS, Karp DA, Harms MJ, Chimenti MS, Garcia-Moreno E B. Domain Swapping Promoted by Charges in the Hydrophobic Core of a Protein Biophysical Journal. 100: 398a. DOI: 10.1016/J.Bpj.2010.12.2365  0.337
2010 Bridgham JT, Eick GN, Larroux C, Deshpande K, Harms MJ, Gauthier ME, Ortlund EA, Degnan BM, Thornton JW. Protein evolution by molecular tinkering: diversification of the nuclear receptor superfamily from a ligand-dependent ancestor. Plos Biology. 8. PMID 20957188 DOI: 10.1371/Journal.Pbio.1000497  0.627
2010 Harms MJ, Thornton JW. Analyzing protein structure and function using ancestral gene reconstruction. Current Opinion in Structural Biology. 20: 360-6. PMID 20413295 DOI: 10.1016/J.Sbi.2010.03.005  0.63
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