Jinchuan Xing, Ph.D. - Publications

2005 Louisiana State University, Baton Rouge, LA, United States 
Biochemistry, Molecular Biology

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Liu S, Tian M, He F, Li J, Xie H, Liu W, Zhang Y, Zhang R, Yi M, Che F, Ma X, Zheng Y, Deng H, Wang G, Chen L, ... ... Xing J, et al. Spontaneous hyperactivity in Ash1l mutant mice, a new model for Tourette syndrome. Molecular Psychiatry. 25: 241-242. PMID 31965035 DOI: 10.1038/s41380-019-0642-7  0.8
2019 Liu S, Tian M, He F, Li J, Xie H, Liu W, Zhang Y, Zhang R, Yi M, Che F, Ma X, Zheng Y, Deng H, Wang G, Chen L, ... ... Xing J, et al. Mutations in ASH1L confer susceptibility to Tourette syndrome. Molecular Psychiatry. PMID 31673123 DOI: 10.1038/s41380-019-0560-8  0.8
2019 Feusier J, Watkins WS, Thomas J, Farrell A, Witherspoon DJ, Baird L, Ha H, Xing J, Jorde LB. Pedigree-based estimation of human mobile element retrotransposition rates. Genome Research. 29: 1567-1577. PMID 31575651 DOI: 10.1101/gr.247965.118  0.6
2018 Regier AA, Farjoun Y, Larson DE, Krasheninina O, Kang HM, Howrigan DP, Chen BJ, Kher M, Banks E, Ames DC, English AC, Li H, Xing J, Zhang Y, Matise T, et al. Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects. Nature Communications. 9: 4038. PMID 30279509 DOI: 10.1038/s41467-018-06159-4  0.4
2017 Zhou A, Zhang Y, Sun Y, Xing J. PipelineDog: a simple and flexible graphic pipeline construction and maintenance tool. Bioinformatics (Oxford, England). PMID 29186378 DOI: 10.1093/bioinformatics/btx759  0.4
2017 Wang N, Zhang Y, Gedvilaite E, Loh JW, Lin T, Liu X, Liu CG, Kumar D, Donnelly R, Raymond K, Schuchman EH, Sleat DE, Lobel P, Xing J. Using whole exome sequencing to investigate the genetic bases of lysosomal storage diseases of unknown etiology. Human Mutation. PMID 28703315 DOI: 10.1002/humu.23291  0.4
2017 Rustagi N, Zhou A, Watkins WS, Gedvilaite E, Wang S, Ramesh N, Muzny D, Gibbs RA, Jorde LB, Yu F, Xing J. Extremely low-coverage whole genome sequencing in South Asians captures population genomics information. Bmc Genomics. 18: 396. PMID 28532386 DOI: 10.1186/s12864-017-3767-6  0.6
2016 Sleat DE, Gedvilaite E, Zhang Y, Lobel P, Xing J. Analysis of large-scale whole exome sequencing data to determine the prevalence of genetically-distinct forms of neuronal ceroid lipofuscinosis. Gene. PMID 27553520 DOI: 10.1016/j.gene.2016.08.031  0.4
2016 Ha H, Loh JW, Xing J. Identification of polymorphic SVA retrotransposons using a mobile element scanning method for SVA (ME-Scan-SVA). Mobile Dna. 7: 15. PMID 27478512 DOI: 10.1186/s13100-016-0072-x  0.8
2015 Parrish NF, Fujino K, Shiromoto Y, Iwasaki YW, Ha H, Xing J, Makino A, Kuramochi-Miyagawa S, Nakano T, Siomi H, Honda T, Tomonaga K. piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals. Rna (New York, N.Y.). PMID 26283688 DOI: 10.1261/rna.052092.115  0.8
2015 Platt RN, Zhang Y, Witherspoon DJ, Xing J, Suh A, Keith MS, Jorde LB, Stevens RD, Ray DA. Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis. Genome Biology and Evolution. 7: 1664-75. PMID 26014613 DOI: 10.1093/gbe/evv099  0.8
2014 Lorenzo FR, Huff C, Myllymäki M, Olenchock B, Swierczek S, Tashi T, Gordeuk V, Wuren T, Ri-Li G, McClain DA, Khan TM, Koul PA, Guchhait P, Salama ME, Xing J, et al. A genetic mechanism for Tibetan high-altitude adaptation. Nature Genetics. 46: 951-6. PMID 25129147 DOI: 10.1038/ng.3067  0.8
2014 Hu H, Roach JC, Coon H, Guthery SL, Voelkerding KV, Margraf RL, Durtschi JD, Tavtigian SV, Shankaracharya, Wu W, Scheet P, Wang S, Xing J, Glusman G, Hubley R, et al. A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data. Nature Biotechnology. 32: 663-9. PMID 24837662 DOI: 10.1038/nbt.2895  0.8
2014 Fan Z, Zhao G, Li P, Osada N, Xing J, Yi Y, Du L, Silva P, Wang H, Sakate R, Zhang X, Xu H, Yue B, Li J. Whole-genome sequencing of tibetan macaque (Macaca Thibetana) provides new insight into the macaque evolutionary history. Molecular Biology and Evolution. 31: 1475-89. PMID 24648498 DOI: 10.1093/molbev/msu104  0.8
2014 Wuren T, Simonson TS, Qin G, Xing J, Huff CD, Witherspoon DJ, Jorde LB, Ge RL. Shared and unique signals of high-altitude adaptation in geographically distinct Tibetan populations. Plos One. 9: e88252. PMID 24642866 DOI: 10.1371/journal.pone.0088252  0.8
2013 Wang S, Lachance J, Tishkoff SA, Hey J, Xing J. Apparent variation in Neanderthal admixture among African populations is consistent with gene flow from Non-African populations. Genome Biology and Evolution. 5: 2075-81. PMID 24162011 DOI: 10.1093/gbe/evt160  0.8
2013 Xing J, Wuren T, Simonson TS, Watkins WS, Witherspoon DJ, Wu W, Qin G, Huff CD, Jorde LB, Ge RL. Genomic analysis of natural selection and phenotypic variation in high-altitude mongolians. Plos Genetics. 9: e1003634. PMID 23874230 DOI: 10.1371/journal.pgen.1003634  0.8
2013 Ge RL, Cai Q, Shen YY, San A, Ma L, Zhang Y, Yi X, Chen Y, Yang L, Huang Y, He R, Hui Y, Hao M, Li Y, Wang B, ... ... Xing J, et al. Draft genome sequence of the Tibetan antelope. Nature Communications. 4: 1858. PMID 23673643 DOI: 10.1038/ncomms2860  0.8
2013 Wu W, Clark EA, Stoddard GJ, Watkins WS, Esplin MS, Manuck TA, Xing J, Varner MW, Jorde LB. Effect of interleukin-6 polymorphism on risk of preterm birth within population strata: a meta-analysis. Bmc Genetics. 14: 30. PMID 23617681 DOI: 10.1186/1471-2156-14-30  0.8
2013 Witherspoon DJ, Zhang Y, Xing J, Watkins WS, Ha H, Batzer MA, Jorde LB. Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations. Genome Research. 23: 1170-81. PMID 23599355 DOI: 10.1101/gr.148973.112  0.8
2013 Xing J, Witherspoon DJ, Jorde LB. Mobile element biology: new possibilities with high-throughput sequencing. Trends in Genetics : Tig. 29: 280-9. PMID 23312846 DOI: 10.1016/j.tig.2012.12.002  0.8
2012 Kim W, Londono D, Zhou L, Xing J, Nato AQ, Musolf A, Matise TC, Finch SJ, Gordon D. Single-variant and multi-variant trend tests for genetic association with next-generation sequencing that are robust to sequencing error. Human Heredity. 74: 172-83. PMID 23594495 DOI: 10.1159/000346824  0.8
2012 Watkins WS, Xing J, Huff C, Witherspoon DJ, Zhang Y, Perego UA, Woodward SR, Jorde LB. Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World. Bmc Genetics. 13: 39. PMID 22606979 DOI: 10.1186/1471-2156-13-39  0.8
2012 Ge RL, Simonson TS, Cooksey RC, Tanna U, Qin G, Huff CD, Witherspoon DJ, Xing J, Zhengzhong B, Prchal JT, Jorde LB, McClain DA. Metabolic insight into mechanisms of high-altitude adaptation in Tibetans. Molecular Genetics and Metabolism. 106: 244-7. PMID 22503288 DOI: 10.1016/j.ymgme.2012.03.003  0.8
2012 Stringham SA, Mulroy EE, Xing J, Record D, Guernsey MW, Aldenhoven JT, Osborne EJ, Shapiro MD. Divergence, convergence, and the ancestry of feral populations in the domestic rock pigeon. Current Biology : Cb. 22: 302-8. PMID 22264611 DOI: 10.1016/j.cub.2011.12.045  0.8
2012 Huff CD, Witherspoon DJ, Zhang Y, Gatenbee C, Denson LA, Kugathasan S, Hakonarson H, Whiting A, Davis CT, Wu W, Xing J, Watkins WS, Bamshad MJ, Bradfield JP, Bulayeva K, et al. Crohn's disease and genetic hitchhiking at IBD5. Molecular Biology and Evolution. 29: 101-11. PMID 21816865 DOI: 10.1093/molbev/msr151  0.8
2011 Stewart C, Kural D, Strömberg MP, Walker JA, Konkel MK, Stütz AM, Urban AE, Grubert F, Lam HY, Lee WP, Busby M, Indap AR, Garrison E, Huff C, Xing J, et al. A comprehensive map of mobile element insertion polymorphisms in humans. Plos Genetics. 7: e1002236. PMID 21876680 DOI: 10.1371/journal.pgen.1002236  0.8
2011 Lyon GJ, Jiang T, Van Wijk R, Wang W, Bodily PM, Xing J, Tian L, Robison RJ, Clement M, Lin Y, Zhang P, Liu Y, Moore B, Glessner JT, Elia J, et al. Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications. Discovery Medicine. 12: 41-55. PMID 21794208  0.8
2011 Yandell M, Huff C, Hu H, Singleton M, Moore B, Xing J, Jorde LB, Reese MG. A probabilistic disease-gene finder for personal genomes. Genome Research. 21: 1529-42. PMID 21700766 DOI: 10.1101/gr.123158.111  0.8
2011 Roos C, Zinner D, Kubatko LS, Schwarz C, Yang M, Meyer D, Nash SD, Xing J, Batzer MA, Brameier M, Leendertz FH, Ziegler T, Perwitasari-Farajallah D, Nadler T, Walter L, et al. Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys. Bmc Evolutionary Biology. 11: 77. PMID 21435245 DOI: 10.1186/1471-2148-11-77  0.8
2011 Huff CD, Witherspoon DJ, Simonson TS, Xing J, Watkins WS, Zhang Y, Tuohy TM, Neklason DW, Burt RW, Guthery SL, Woodward SR, Jorde LB. Maximum-likelihood estimation of recent shared ancestry (ERSA). Genome Research. 21: 768-74. PMID 21324875 DOI: 10.1101/gr.115972.110  0.8
2011 Simonson TS, Xing J, Barrett R, Jerah E, Loa P, Zhang Y, Watkins WS, Witherspoon DJ, Huff CD, Woodward S, Mowry B, Jorde LB. Ancestry of the Iban is predominantly Southeast Asian: genetic evidence from autosomal, mitochondrial, and Y chromosomes. Plos One. 6: e16338. PMID 21305013 DOI: 10.1371/journal.pone.0016338  0.8
2010 Xing J, Watkins WS, Hu Y, Huff CD, Sabo A, Muzny DM, Bamshad MJ, Gibbs RA, Jorde LB, Yu F. Genetic diversity in India and the inference of Eurasian population expansion. Genome Biology. 11: R113. PMID 21106085 DOI: 10.1186/gb-2010-11-11-r113  0.8
2010 Xing J, Watkins WS, Shlien A, Walker E, Huff CD, Witherspoon DJ, Zhang Y, Simonson TS, Weiss RB, Schiffman JD, Malkin D, Woodward SR, Jorde LB. Toward a more uniform sampling of human genetic diversity: a survey of worldwide populations by high-density genotyping. Genomics. 96: 199-210. PMID 20643205 DOI: 10.1016/j.ygeno.2010.07.004  0.8
2010 Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB. Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. Bmc Genomics. 11: 410. PMID 20591181 DOI: 10.1186/1471-2164-11-410  0.8
2010 Simonson TS, Yang Y, Huff CD, Yun H, Qin G, Witherspoon DJ, Bai Z, Lorenzo FR, Xing J, Jorde LB, Prchal JT, Ge R. Genetic evidence for high-altitude adaptation in Tibet. Science (New York, N.Y.). 329: 72-5. PMID 20466884 DOI: 10.1126/science.1189406  0.8
2010 Simonson TS, Zhang Y, Huff CD, Xing J, Watkins WS, Witherspoon DJ, Woodward SR, Jorde LB. Limited distribution of a cardiomyopathy-associated variant in India. Annals of Human Genetics. 74: 184-8. PMID 20201939 DOI: 10.1111/j.1469-1809.2010.00561.x  0.8
2010 Huff CD, Xing J, Rogers AR, Witherspoon D, Jorde LB. Mobile elements reveal small population size in the ancient ancestors of Homo sapiens. Proceedings of the National Academy of Sciences of the United States of America. 107: 2147-52. PMID 20133859 DOI: 10.1073/pnas.0909000107  0.8
2009 Witherspoon DJ, Watkins WS, Zhang Y, Xing J, Tolpinrud WL, Hedges DJ, Batzer MA, Jorde LB. Alu repeats increase local recombination rates. Bmc Genomics. 10: 530. PMID 19917129 DOI: 10.1186/1471-2164-10-530  0.8
2009 Damert A, Raiz J, Horn AV, Löwer J, Wang H, Xing J, Batzer MA, Löwer R, Schumann GG. 5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome. Genome Research. 19: 1992-2008. PMID 19652014 DOI: 10.1101/gr.093435.109  0.8
2009 Li J, Han K, Xing J, Kim HS, Rogers J, Ryder OA, Disotell T, Yue B, Batzer MA. Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene. 448: 242-9. PMID 19497354 DOI: 10.1016/j.gene.2009.05.013  0.8
2009 Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S, Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 19: 1516-26. PMID 19439515 DOI: 10.1101/gr.091827.109  0.8
2009 Xing J, Watkins WS, Witherspoon DJ, Zhang Y, Guthery SL, Thara R, Mowry BJ, Bulayeva K, Weiss RB, Jorde LB. Fine-scaled human genetic structure revealed by SNP microarrays. Genome Research. 19: 815-25. PMID 19411602 DOI: 10.1101/gr.085589.108  0.8
2009 Marchani EE, Xing J, Witherspoon DJ, Jorde LB, Rogers AR. Estimating the age of retrotransposon subfamilies using maximum likelihood. Genomics. 94: 78-82. PMID 19379804 DOI: 10.1016/j.ygeno.2009.04.002  0.8
2008 Xing J, Watkins WS, Zhang Y, Witherspoon DJ, Jorde LB. High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays. Genomics. 92: 452-6. PMID 18786630 DOI: 10.1016/j.ygeno.2008.08.007  0.8
2008 Xing J, Witherspoon DJ, Watkins WS, Zhang Y, Tolpinrud W, Jorde LB. HapMap tagSNP transferability in multiple populations: general guidelines. Genomics. 92: 41-51. PMID 18482828 DOI: 10.1016/j.ygeno.2008.03.011  0.8
2007 Xing J, Witherspoon DJ, Ray DA, Batzer MA, Jorde LB. Mobile DNA elements in primate and human evolution. American Journal of Physical Anthropology. 2-19. PMID 18046749 DOI: 10.1002/ajpa.20722  0.8
2007 Han K, Konkel MK, Xing J, Wang H, Lee J, Meyer TJ, Huang CT, Sandifer E, Hebert K, Barnes EW, Hubley R, Miller W, Smit AF, Ullmer B, Batzer MA. Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science (New York, N.Y.). 316: 238-40. PMID 17431169 DOI: 10.1126/science.1139462  0.8
2007 Xing J, Wang H, Zhang Y, Ray DA, Tosi AJ, Disotell TR, Batzer MA. A mobile element-based evolutionary history of guenons (tribe Cercopithecini). Bmc Biology. 5: 5. PMID 17266768 DOI: 10.1186/1741-7007-5-5  0.8
2007 Herke SW, Xing J, Ray DA, Zimmerman JW, Cordaux R, Batzer MA. A SINE-based dichotomous key for primate identification. Gene. 390: 39-51. PMID 17056208 DOI: 10.1016/j.gene.2006.08.015  0.8
2006 Ray DA, Xing J, Salem AH, Batzer MA. SINEs of a nearly perfect character. Systematic Biology. 55: 928-35. PMID 17345674 DOI: 10.1080/10635150600865419  0.8
2006 Xing J, Wang H, Belancio VP, Cordaux R, Deininger PL, Batzer MA. Emergence of primate genes by retrotransposon-mediated sequence transduction. Proceedings of the National Academy of Sciences of the United States of America. 103: 17608-13. PMID 17101974 DOI: 10.1073/pnas.0603224103  0.8
2005 Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. Journal of Molecular Biology. 354: 994-1007. PMID 16288912 DOI: 10.1016/j.jmb.2005.09.085  0.8
2005 Hedges DJ, Cordaux R, Xing J, Witherspoon DJ, Rogers AR, Jorde LB, Batzer MA. Modeling the amplification dynamics of human Alu retrotransposons. Plos Computational Biology. 1: e44. PMID 16201008 DOI: 10.1371/journal.pcbi.0010044  0.8
2005 Xing J, Wang H, Han K, Ray DA, Huang CH, Chemnick LG, Stewart CB, Disotell TR, Ryder OA, Batzer MA. A mobile element based phylogeny of Old World monkeys. Molecular Phylogenetics and Evolution. 37: 872-80. PMID 15936216 DOI: 10.1016/j.ympev.2005.04.015  0.8
2005 Han K, Xing J, Wang H, Hedges DJ, Garber RK, Cordaux R, Batzer MA. Under the genomic radar: the stealth model of Alu amplification. Genome Research. 15: 655-64. PMID 15867427 DOI: 10.1101/gr.3492605  0.8
2005 Ray DA, Xing J, Hedges DJ, Hall MA, Laborde ME, Anders BA, White BR, Stoilova N, Fowlkes JD, Landry KE, Chemnick LG, Ryder OA, Batzer MA. Alu insertion loci and platyrrhine primate phylogeny. Molecular Phylogenetics and Evolution. 35: 117-26. PMID 15737586 DOI: 10.1016/j.ympev.2004.10.023  0.8
2004 Xing J, Hedges DJ, Han K, Wang H, Cordaux R, Batzer MA. Alu element mutation spectra: molecular clocks and the effect of DNA methylation. Journal of Molecular Biology. 344: 675-82. PMID 15533437 DOI: 10.1016/j.jmb.2004.09.058  0.8
2004 Hedges DJ, Callinan PA, Cordaux R, Xing J, Barnes E, Batzer MA. Differential alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Research. 14: 1068-75. PMID 15173113 DOI: 10.1101/gr.2530404  0.8
2004 Walker JA, Garber RK, Hedges DJ, Kilroy GE, Xing J, Batzer MA. Resolution of mixed human DNA samples using mitochondrial DNA sequence variants. Analytical Biochemistry. 325: 171-3. PMID 14715300 DOI: 10.1016/j.ab.2003.10.003  0.8
2003 Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. Journal of Molecular Evolution. 57: S76-89. PMID 15008405 DOI: 10.1007/s00239-003-0009-0  0.8
2003 Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 317: 103-10. PMID 14604797 DOI: 10.1016/S0378-1119(03)00662-0  0.8
2003 Salem AH, Ray DA, Xing J, Callinan PA, Myers JS, Hedges DJ, Garber RK, Witherspoon DJ, Jorde LB, Batzer MA. Alu elements and hominid phylogenetics. Proceedings of the National Academy of Sciences of the United States of America. 100: 12787-91. PMID 14561894 DOI: 10.1073/pnas.2133766100  0.8
2003 Walker JA, Kilroy GE, Xing J, Shewale J, Sinha SK, Batzer MA. Human DNA quantitation using Alu element-based polymerase chain reaction. Analytical Biochemistry. 315: 122-8. PMID 12672420 DOI: 10.1016/S0003-2697(03)00081-2  0.8
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