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Fernando Racimo - Publications

Affiliations: 
2012-2016 Integrative Biology University of California, Berkeley, Berkeley, CA, United States 
 2016-2017 New York Genome Center 
 2017- Natural History Museum University of Copenhagen, København, Denmark 
Area:
Evolutionary genetics, population genetics, paleogenomics
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55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Fischer A, Sjögren KG, Jensen TZT, Jørkov ML, Lysdahl P, Vimala T, Refoyo-Martínez A, Scorrano G, Price TD, Gröcke DR, Gotfredsen AB, Sørensen L, Alexandersen V, Wåhlin S, Stenderup J, ... ... Racimo F, et al. Vittrup Man-The life-history of a genetic foreigner in Neolithic Denmark. Plos One. 19: e0297032. PMID 38354111 DOI: 10.1371/journal.pone.0297032  0.305
2024 Allentoft ME, Sikora M, Refoyo-Martínez A, Irving-Pease EK, Fischer A, Barrie W, Ingason A, Stenderup J, Sjögren KG, Pearson A, Sousa da Mota B, Schulz Paulsson B, Halgren A, Macleod R, Jørkov MLS, ... ... Racimo F, et al. Publisher Correction: Population genomics of post-glacial western Eurasia. Nature. PMID 38238538 DOI: 10.1038/s41586-024-07044-5  0.805
2024 Allentoft ME, Sikora M, Refoyo-Martínez A, Irving-Pease EK, Fischer A, Barrie W, Ingason A, Stenderup J, Sjögren KG, Pearson A, Sousa da Mota B, Schulz Paulsson B, Halgren A, Macleod R, Jørkov MLS, ... ... Racimo F, et al. Population genomics of post-glacial western Eurasia. Nature. 625: 301-311. PMID 38200295 DOI: 10.1038/s41586-023-06865-0  0.816
2024 Irving-Pease EK, Refoyo-Martínez A, Barrie W, Ingason A, Pearson A, Fischer A, Sjögren KG, Halgren AS, Macleod R, Demeter F, Henriksen RA, Vimala T, McColl H, Vaughn AH, Speidel L, ... ... Racimo F, et al. The selection landscape and genetic legacy of ancient Eurasians. Nature. 625: 312-320. PMID 38200293 DOI: 10.1038/s41586-023-06705-1  0.785
2023 Meadows JRS, Kidd JM, Wang GD, Parker HG, Schall PZ, Bianchi M, Christmas MJ, Bougiouri K, Buckley RM, Hitte C, Nguyen AK, Wang C, Jagannathan V, Niskanen JE, Frantz LAF, ... ... Racimo F, et al. Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture. Genome Biology. 24: 255. PMID 37936157 DOI: 10.1186/s13059-023-03101-w  0.646
2023 Meadows JRS, Kidd JM, Wang GD, Parker HG, Schall PZ, Bianchi M, Christmas MJ, Bougiouri K, Buckley RM, Hitte C, Nguyen AK, Wang C, Jagannathan V, Niskanen JE, Frantz LAF, ... ... Racimo F, et al. Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture. Genome Biology. 24: 187. PMID 37582787 DOI: 10.1186/s13059-023-03023-7  0.654
2023 Louis M, Korlević P, Nykänen M, Archer F, Berrow S, Brownlow A, Lorenzen ED, O'Brien J, Post K, Racimo F, Rogan E, Rosel PE, Sinding MS, van der Es H, Wales N, et al. Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters. Nature Communications. 14: 4020. PMID 37463880 DOI: 10.1038/s41467-023-39532-z  0.474
2023 Reeve AH, Gower G, Pujolar JM, Smith BT, Petersen B, Olsson U, Haryoko T, Koane B, Maiah G, Blom MPK, Ericson PGP, Irestedt M, Racimo F, Jønsson KA. Population genomics of the island thrush elucidates one of earth's great archipelagic radiations. Evolution Letters. 7: 24-36. PMID 37065434 DOI: 10.1093/evlett/qrac006  0.356
2022 Muktupavela RA, Petr M, Ségurel L, Korneliussen T, Novembre J, Racimo F. Modeling the spatiotemporal spread of beneficial alleles using ancient genomes. Elife. 11. PMID 36537881 DOI: 10.7554/eLife.73767  0.707
2022 Wang Y, Pedersen MW, Alsos IG, De Sanctis B, Racimo F, Prohaska A, Coissac E, Owens HL, Merkel MKF, Fernandez-Guerra A, Rouillard A, Lammers Y, Alberti A, Denoeud F, Money D, et al. Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics. Nature. PMID 36163291 DOI: 10.1038/s41586-022-05359-9  0.337
2022 Wang Y, Pedersen MW, Alsos IG, De Sanctis B, Racimo F, Prohaska A, Coissac E, Owens HL, Merkel MKF, Fernandez-Guerra A, Rouillard A, Lammers Y, Alberti A, Denoeud F, Money D, et al. Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics. Nature. PMID 35296866 DOI: 10.1038/s41586-022-04628-x  0.337
2021 Wang Y, Pedersen MW, Alsos IG, De Sanctis B, Racimo F, Prohaska A, Coissac E, Owens HL, Merkel MKF, Fernandez-Guerra A, Rouillard A, Lammers Y, Alberti A, Denoeud F, Money D, et al. Late Quaternary dynamics of Arctic biota from ancient environmental genomics. Nature. PMID 34671161 DOI: 10.1038/s41586-021-04016-x  0.34
2021 Cheng JY, Stern AJ, Racimo F, Nielsen R. Detecting selection in multiple populations by modelling ancestral admixture components. Molecular Biology and Evolution. PMID 34626111 DOI: 10.1093/molbev/msab294  0.659
2021 Irving-Pease EK, Muktupavela R, Dannemann M, Racimo F. Quantitative Human Paleogenetics: What can Ancient DNA Tell us About Complex Trait Evolution? Frontiers in Genetics. 12: 703541. PMID 34422004 DOI: 10.3389/fgene.2021.703541  0.795
2021 Gower G, Picazo PI, Fumagalli M, Racimo F. Detecting adaptive introgression in human evolution using convolutional neural networks. Elife. 10. PMID 34032215 DOI: 10.7554/eLife.64669  0.477
2021 Margaryan A, Lawson DJ, Sikora M, Racimo F, Rasmussen S, Moltke I, Cassidy LM, Jørsboe E, Ingason A, Pedersen MW, Korneliussen T, Wilhelmson H, Buś MM, de Barros Damgaard P, Martiniano R, et al. Author Correction: Population genomics of the Viking world. Nature. PMID 33707634 DOI: 10.1038/s41586-021-03328-2  0.672
2020 Margaryan A, Lawson DJ, Sikora M, Racimo F, Rasmussen S, Moltke I, Cassidy LM, Jørsboe E, Ingason A, Pedersen MW, Korneliussen T, Wilhelmson H, Buś MM, de Barros Damgaard P, Martiniano R, et al. Population genomics of the Viking world. Nature. 585: 390-396. PMID 32939067 DOI: 10.1038/S41586-020-2688-8  0.73
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, ... ... Racimo F, et al. A community-maintained standard library of population genetic models. Elife. 9. PMID 32573438 DOI: 10.7554/Elife.54967  0.404
2020 Welker F, Ramos-Madrigal J, Gutenbrunner P, Mackie M, Tiwary S, Rakownikow Jersie-Christensen R, Chiva C, Dickinson MR, Kuhlwilm M, de Manuel M, Gelabert P, Martinón-Torres M, Margvelashvili A, Arsuaga JL, Carbonell E, ... ... Racimo F, et al. The dental proteome of Homo antecessor. Nature. 580: 235-238. PMID 32269345 DOI: 10.1038/S41586-020-2153-8  0.326
2020 Racimo F, Woodbridge J, Fyfe RM, Sikora M, Sjögren KG, Kristiansen K, Vander Linden M. The spatiotemporal spread of human migrations during the European Holocene. Proceedings of the National Academy of Sciences of the United States of America. PMID 32238559 DOI: 10.1073/Pnas.1920051117  0.413
2020 Racimo F, Sikora M, Vander Linden M, Schroeder H, Lalueza-Fox C. Beyond broad strokes: sociocultural insights from the study of ancient genomes. Nature Reviews. Genetics. PMID 32127690 DOI: 10.1038/S41576-020-0218-Z  0.436
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, ... ... Racimo F, et al. Author response: A community-maintained standard library of population genetic models Elife. DOI: 10.7554/Elife.54967.Sa2  0.349
2019 Refoyo-Martínez A, da Fonseca RR, Halldórsdóttir K, Árnason E, Mailund T, Racimo F. Identifying loci under positive selection in complex population histories. Genome Research. PMID 31362936 DOI: 10.1101/Gr.246777.118  0.564
2019 Prohaska A, Racimo F, Schork AJ, Sikora M, Stern AJ, Ilardo M, Allentoft ME, Folkersen L, Buil A, Moreno-Mayar JV, Korneliussen T, Geschwind D, Ingason A, Werge T, Nielsen R, et al. Human Disease Variation in the Light of Population Genomics. Cell. 177: 115-131. PMID 30901534 DOI: 10.1016/J.Cell.2019.01.052  0.713
2019 Berg JJ, Harpak A, Sinnott-Armstrong N, Joergensen AM, Mostafavi H, Field Y, Boyle EA, Zhang X, Racimo F, Pritchard JK, Coop G. Reduced signal for polygenic adaptation of height in UK Biobank. Elife. 8. PMID 30895923 DOI: 10.7554/Elife.39725  0.433
2018 Moreno-Mayar JV, Vinner L, de Barros Damgaard P, de la Fuente C, Chan J, Spence JP, Allentoft ME, Vimala T, Racimo F, Pinotti T, Rasmussen S, Margaryan A, Iraeta Orbegozo M, Mylopotamitaki D, Wooller M, et al. Early human dispersals within the Americas. Science (New York, N.Y.). PMID 30409807 DOI: 10.1126/Science.Aav2621  0.785
2018 McColl H, Racimo F, Vinner L, Demeter F, Gakuhari T, Moreno-Mayar JV, van Driem G, Gram Wilken U, Seguin-Orlando A, de la Fuente Castro C, Wasef S, Shoocongdej R, Souksavatdy V, Sayavongkhamdy T, Saidin MM, et al. The prehistoric peopling of Southeast Asia. Science (New York, N.Y.). 361: 88-92. PMID 29976827 DOI: 10.1126/Science.Aat3628  0.739
2018 Dannemann M, Racimo F. Something old, something borrowed: admixture and adaptation in human evolution. Current Opinion in Genetics & Development. 53: 1-8. PMID 29894925 DOI: 10.1016/J.Gde.2018.05.009  0.46
2018 Cappellini E, Prohaska A, Racimo F, Welker F, Pedersen MW, Allentoft ME, de Barros Damgaard P, Gutenbrunner P, Dunne J, Hammann S, Roffet-Salque M, Ilardo M, Moreno-Mayar JV, Wang Y, Sikora M, et al. Ancient Biomolecules and Evolutionary Inference. Annual Review of Biochemistry. PMID 29709200 DOI: 10.1146/Annurev-Biochem-062917-012002  0.354
2018 Ilardo MA, Moltke I, Korneliussen TS, Cheng J, Stern AJ, Racimo F, de Barros Damgaard P, Sikora M, Seguin-Orlando A, Rasmussen S, van den Munckhof ICL, Ter Horst R, Joosten LAB, Netea MG, Salingkat S, et al. Physiological and Genetic Adaptations to Diving in Sea Nomads. Cell. 173: 569-580.e15. PMID 29677510 DOI: 10.1016/J.Cell.2018.03.054  0.665
2018 Ilardo MA, Moltke I, Korneliussen TS, Cheng J, Stern AJ, Racimo F, de Barros Damgaard P, Sikora M, Seguin-Orlando A, Rasmussen S, van den Munckhof ICL, Ter Horst R, Joosten LAB, Netea MG, Salingkat S, et al. Physiological and Genetic Adaptations to Diving in Sea Nomads. Cell. 173: 569-580.e15. PMID 29677510 DOI: 10.1016/J.Cell.2018.03.054  0.665
2018 Racimo F, Berg JJ, Pickrell JK. Detecting Polygenic Adaptation in Admixture Graphs. Genetics. PMID 29348143 DOI: 10.1534/Genetics.117.300489  0.671
2017 Crawford JE, Amaru R, Song J, Julian CG, Racimo F, Cheng JY, Guo X, Yao J, Ambale-Venkatesh B, Lima JA, Rotter JI, Stehlik J, Moore LG, Prchal JT, Nielsen R. Natural Selection on Genes Related to Cardiovascular Health in High-Altitude Adapted Andeans. American Journal of Human Genetics. 101: 752-767. PMID 29100088 DOI: 10.1016/J.Ajhg.2017.09.023  0.63
2017 Posth C, Wißing C, Kitagawa K, Pagani L, van Holstein L, Racimo F, Wehrberger K, Conard NJ, Kind CJ, Bocherens H, Krause J. Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals. Nature Communications. 8: 16046. PMID 28675384 DOI: 10.1038/Ncomms16046  0.431
2017 Theunert C, Racimo F, Slatkin M. Joint Estimation of Relatedness Coefficients and Allele Frequencies from Ancient Samples. Genetics. PMID 28396504 DOI: 10.1534/Genetics.117.200600  0.735
2017 Buckley MT, Racimo F, Allentoft ME, Jensen MK, Jonsson A, Huang H, Hormozdiari F, Sikora M, Marnetto D, Eskin E, Jørgensen ME, Grarup N, Pedersen O, Hansen T, Kraft P, et al. Selection in Europeans on fatty acid desaturases associated with dietary changes. Molecular Biology and Evolution. PMID 28333262 DOI: 10.1093/Molbev/Msx103  0.575
2016 Racimo F, Gokhman D, Fumagalli M, Ko A, Hansen T, Moltke I, Albrechtsen A, Carmel L, Huerta-Sánchez E, Nielsen R. Archaic adaptive introgression in TBX15/WARS2. Molecular Biology and Evolution. PMID 28007980 DOI: 10.1093/Molbev/Msw283  0.675
2016 Racimo F, Renaud G, Slatkin M. Correction: Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans. Plos Genetics. 12: e1006444. PMID 27824857 DOI: 10.1371/Journal.Pgen.1006444  0.63
2016 Racimo F, Marnetto D, Huerta-Sánchez E. Signatures of archaic adaptive introgression in present-day human populations. Molecular Biology and Evolution. PMID 27756828 DOI: 10.1093/Molbev/Msw216  0.523
2016 Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, ... ... Racimo F, et al. A genomic history of Aboriginal Australia. Nature. PMID 27654914 DOI: 10.1038/Nature18299  0.78
2016 Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature. PMID 27654912 DOI: 10.1038/Nature18964  0.598
2016 Slatkin M, Racimo F. Ancient DNA and human history. Proceedings of the National Academy of Sciences of the United States of America. 113: 6380-7. PMID 27274045 DOI: 10.1073/Pnas.1524306113  0.745
2016 Racimo F, Renaud G, Slatkin M. Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans. Plos Genetics. 12: e1005972. PMID 27049965 DOI: 10.1371/Journal.Pgen.1005972  0.733
2016 Racimo F. Testing for Ancient Selection Using Cross-population Allele Frequency Differentiation. Genetics. 202: 733-50. PMID 26596347 DOI: 10.1534/Genetics.115.178095  0.506
2015 Fumagalli M, Moltke I, Grarup N, Racimo F, Bjerregaard P, Jørgensen ME, Korneliussen TS, Gerbault P, Skotte L, Linneberg A, Christensen C, Brandslund I, Jørgensen T, Huerta-Sánchez E, Schmidt EB, et al. Greenlandic Inuit show genetic signatures of diet and climate adaptation. Science (New York, N.Y.). 349: 1343-7. PMID 26383953 DOI: 10.1126/Science.Aab2319  0.598
2015 Racimo F, Sankararaman S, Nielsen R, Huerta-Sánchez E. Evidence for archaic adaptive introgression in humans. Nature Reviews. Genetics. 16: 359-71. PMID 25963373 DOI: 10.1038/Nrg3936  0.715
2015 Teixeira JC, de Filippo C, Weihmann A, Meneu JR, Racimo F, Dannemann M, Nickel B, Fischer A, Halbwax M, Andre C, Atencia R, Meyer M, Parra G, Pääbo S, Andrés AM. Long-Term Balancing Selection in LAD1 Maintains a Missense Trans-Species Polymorphism in Humans, Chimpanzees, and Bonobos. Molecular Biology and Evolution. 32: 1186-96. PMID 25605789 DOI: 10.1093/Molbev/Msv007  0.411
2015 Racimo F, Sankararaman S, Nielsen R, Huerta-Sánchez E. Evidence for archaic adaptive introgression in humans Nature Reviews Genetics. 16: 359-371. DOI: 10.1038/nrg3936  0.554
2014 Racimo F, Schraiber JG. Approximation to the distribution of fitness effects across functional categories in human segregating polymorphisms. Plos Genetics. 10: e1004697. PMID 25375159 DOI: 10.1371/Journal.Pgen.1004697  0.711
2014 Racimo F, Kuhlwilm M, Slatkin M. A test for ancient selective sweeps and an application to candidate sites in modern humans. Molecular Biology and Evolution. 31: 3344-58. PMID 25172957 DOI: 10.1093/Molbev/Msu255  0.733
2014 Castellano S, Parra G, Sánchez-Quinto FA, Racimo F, Kuhlwilm M, Kircher M, Sawyer S, Fu Q, Heinze A, Nickel B, Dabney J, Siebauer M, White L, Burbano HA, Renaud G, et al. Patterns of coding variation in the complete exomes of three Neandertals. Proceedings of the National Academy of Sciences of the United States of America. 111: 6666-71. PMID 24753607 DOI: 10.1073/Pnas.1405138111  0.479
2014 Kim W, Racimo F, Schluter J, Levy SB, Foster KR. Importance of positioning for microbial evolution. Proceedings of the National Academy of Sciences of the United States of America. 111: E1639-47. PMID 24715732 DOI: 10.1073/Pnas.1323632111  0.324
2014 Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature. 505: 43-9. PMID 24352235 DOI: 10.1038/Nature12886  0.807
2012 Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, et al. A high-coverage genome sequence from an archaic Denisovan individual. Science (New York, N.Y.). 338: 222-6. PMID 22936568 DOI: 10.1126/Science.1224344  0.823
2012 Bhullar BA, Marugán-Lobón J, Racimo F, Bever GS, Rowe TB, Norell MA, Abzhanov A. Birds have paedomorphic dinosaur skulls. Nature. 487: 223-6. PMID 22722850 DOI: 10.1038/Nature11146  0.351
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