Jia-Xing Yue, Ph.D. - Publications

2003-2007 School of Life Sciences Nanjing University, Nanjing Shi, Jiangsu Sheng, China 
 2007-2010 School of Life Sciences Nanjing University, Nanjing Shi, Jiangsu Sheng, China 
 2010-2015 Ecology and Evolutionary Biology Rice University, Houston, TX 
 2015- Institute for Research in Cancer and Aging, Nice (IRCAN) 
evolutionary genomics

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Yue JX, Liti G. simuG: a general-purpose genome simulator. Bioinformatics (Oxford, England). PMID 31116378 DOI: 10.1093/bioinformatics/btz424  1
2019 Li J, Vázquez-García I, Persson K, González A, Yue JX, Barré B, Hall MN, Long A, Warringer J, Mustonen V, Liti G. Shared molecular targets confer resistance over short and long evolutionary timescales. Molecular Biology and Evolution. PMID 30657986 DOI: 10.1093/molbev/msz006  1
2018 Yue JX, Liti G. Long-read sequencing data analysis for yeasts. Nature Protocols. 13: 1213-1231. PMID 29725120 DOI: 10.1038/nprot.2018.025  1
2018 Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergström A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, et al. Genome evolution across 1,011 Saccharomyces cerevisiae isolates. Nature. 556: 339-344. PMID 29643504 DOI: 10.1038/s41586-018-0030-5  1
2017 Giordano F, Aigrain L, Quail MA, Coupland P, Bonfield JK, Davies RM, Tischler G, Jackson DK, Keane TM, Li J, Yue JX, Liti G, Durbin R, Ning Z. De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms. Scientific Reports. 7: 3935. PMID 28638050 DOI: 10.1038/s41598-017-03996-z  1
2017 Yue JX, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergström A, Coupland P, Warringer J, Lagomarsino MC, Fischer G, Durbin R, Liti G. Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Nature Genetics. PMID 28416820 DOI: 10.1038/ng.3847  1
2016 Yue JX, Kozmikova I, Ono H, Nossa CW, Kozmik Z, Putnam NH, Yu JK, Holland LZ. Conserved non-coding elements in the most distant genera of cephalochordates: the Goldilocks principle. Genome Biology and Evolution. PMID 27412606 DOI: 10.1093/gbe/evw158  1
2016 Yue JX, Holland ND, Holland LZ, Deheyn DD. The evolution of genes encoding for green fluorescent proteins: insights from cephalochordates (amphioxus). Scientific Reports. 6: 28350. PMID 27311567 DOI: 10.1038/srep28350  1
2016 Krogerus K, Arvas M, De Chiara M, Magalhães F, Mattinen L, Oja M, Vidgren V, Yue JX, Liti G, Gibson B. Ploidy influences the functional attributes of de novo lager yeast hybrids. Applied Microbiology and Biotechnology. PMID 27183995 DOI: 10.1007/s00253-016-7588-3  1
2015 Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM, Sasaki A, Hikosaka-Katayama T, et al. Hemichordate genomes and deuterostome origins. Nature. PMID 26580012 DOI: 10.1038/nature16150  1
2015 Buscà R, Christen R, Lovern M, Clifford AM, Yue JX, Goss GG, Pouysségur J, Lenormand P. ERK1 and ERK2 present functional redundancy in tetrapods despite higher evolution rate of ERK1. Bmc Evolutionary Biology. 15: 179. PMID 26336084 DOI: 10.1186/s12862-015-0450-x  1
2015 Yue JX, Li KL, Yu JK. Discovery of germline-related genes in Cephalochordate amphioxus: A genome wide survey using genome annotation and transcriptome data. Marine Genomics. PMID 25847029 DOI: 10.1016/j.margen.2015.03.010  1
2014 Yue JX, Yu JK, Putnam NH, Holland LZ. The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolution. Genome Biology and Evolution. 6: 2681-96. PMID 25240057 DOI: 10.1093/gbe/evu212  1
2014 Nossa CW, Havlak P, Yue JX, Lv J, Vincent KY, Brockmann HJ, Putnam NH. Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication. Gigascience. 3: 9. PMID 24987520 DOI: 10.1186/2047-217X-3-9  1
2012 Yue JX, Meyers BC, Chen JQ, Tian D, Yang S. Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes. The New Phytologist. 193: 1049-63. PMID 22212278 DOI: 10.1111/j.1469-8137.2011.04006.x  1
2010 Yue JX, Li J, Wang D, Araki H, Tian D, Yang S. Genome-wide investigation reveals high evolutionary rates in annual model plants. Bmc Plant Biology. 10: 242. PMID 21062446 DOI: 10.1186/1471-2229-10-242  1
2008 Yang S, Zhang X, Yue JX, Tian D, Chen JQ. Recent duplications dominate NBS-encoding gene expansion in two woody species. Molecular Genetics and Genomics : Mgg. 280: 187-98. PMID 18563445 DOI: 10.1007/s00438-008-0355-0  1
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