Linda Z. Holland - Publications

Scripps Institution of Oceanography University of California, San Diego, La Jolla, CA 

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Holland LZ, Holland ND. Cephalochordates: A window into vertebrate origins. Current Topics in Developmental Biology. 141: 119-147. PMID 33602486 DOI: 10.1016/bs.ctdb.2020.07.001  0.56
2021 Holland LZ, Li G. Laboratory Culture and Mutagenesis of Amphioxus (Branchiostoma floridae). Methods in Molecular Biology (Clifton, N.J.). 2219: 1-29. PMID 33074531 DOI: 10.1007/978-1-0716-0974-3_1  0.96
2018 Ono H, Koop D, Holland LZ. Nodal and Hedgehog synergize in gill slit formation during development of the cephalochordate . Development (Cambridge, England). PMID 29980563 DOI: 10.1242/dev.162586  0.32
2017 Holland ND, Holland LZ. The ups and downs of amphioxus biology: a history. The International Journal of Developmental Biology. 61: 575-583. PMID 29319106 DOI: 10.1387/ijdb.160395LH  0.56
2016 Yue JX, Kozmikova I, Ono H, Nossa CW, Kozmik Z, Putnam NH, Yu JK, Holland LZ. Conserved non-coding elements in the most distant genera of cephalochordates: the Goldilocks principle. Genome Biology and Evolution. PMID 27412606 DOI: 10.1093/Gbe/Evw158  0.96
2016 Yue JX, Holland ND, Holland LZ, Deheyn DD. The evolution of genes encoding for green fluorescent proteins: insights from cephalochordates (amphioxus). Scientific Reports. 6: 28350. PMID 27311567 DOI: 10.1038/srep28350  0.76
2015 Holland ND, Holland LZ, Holland PW. Scenarios for the making of vertebrates. Nature. 520: 450-5. PMID 25903626 DOI: 10.1038/Nature14433  0.76
2015 Holland ND, Holland LZ, Heimberg A. Hybrids between the Florida amphioxus (Branchiostoma floridae) and the Bahamas lancelet (Asymmetron lucayanum): developmental morphology and chromosome counts. The Biological Bulletin. 228: 13-24. PMID 25745097  0.56
2014 Yue JX, Yu JK, Putnam NH, Holland LZ. The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolution. Genome Biology and Evolution. 6: 2681-96. PMID 25240057 DOI: 10.1093/Gbe/Evu212  0.76
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. Brain, Behavior and Evolution. 83: 1-8. PMID 24603302 DOI: 10.1159/000360152  0.76
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. The Journal of Comparative Neurology. 522: 1445-53. PMID 24596113 DOI: 10.1002/Cne.23568  0.76
2013 Holland LZ, Carvalho JE, Escriva H, Laudet V, Schubert M, Shimeld SM, Yu JK. Evolution of bilaterian central nervous systems: a single origin? Evodevo. 4: 27. PMID 24098981 DOI: 10.1186/2041-9139-4-27  0.96
2012 Short S, Kozmik Z, Holland LZ. The function and developmental expression of alternatively spliced isoforms of amphioxus and Xenopus laevis Pax2/5/8 genes: revealing divergence at the invertebrate to vertebrate transition. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 318: 555-71. PMID 22791613 DOI: 10.1002/jez.b.22460  0.32
2012 Holland LZ. Amphioxus genomics. Briefings in Functional Genomics. 11: 87-8. PMID 22441552 DOI: 10.1093/bfgp/els014  0.76
2011 Koop D, Holland LZ, Setiamarga D, Schubert M, Holland ND. Tail regression induced by elevated retinoic acid signaling in amphioxus larvae occurs by tissue remodeling, not cell death. Evolution & Development. 13: 427-35. PMID 23016904 DOI: 10.1111/j.1525-142X.2011.00501.x  0.56
2011 Wu HR, Chen YT, Su YH, Luo YJ, Holland LZ, Yu JK. Asymmetric localization of germline markers Vasa and Nanos during early development in the amphioxus Branchiostoma floridae. Developmental Biology. 353: 147-59. PMID 21354126 DOI: 10.1016/j.ydbio.2011.02.014  0.96
2010 Holland LZ, Sower SA. "Insights of early chordate genomics: endocrinology and development in amphioxus, tunicates and lampreys": introduction to the symposium. Integrative and Comparative Biology. 50: 17-21. PMID 21558184 DOI: 10.1093/Icb/Icq039  0.76
2010 Holland ND, Holland LZ. Laboratory spawning and development of the Bahama lancelet, Asymmetron lucayanum (cephalochordata): fertilization through feeding larvae. The Biological Bulletin. 219: 132-41. PMID 20972258  0.76
2010 Onai T, Yu JK, Blitz IL, Cho KW, Holland LZ. Opposing Nodal/Vg1 and BMP signals mediate axial patterning in embryos of the basal chordate amphioxus. Developmental Biology. 344: 377-89. PMID 20488174 DOI: 10.1016/j.ydbio.2010.05.016  0.96
2010 Koop D, Holland ND, Sémon M, Alvarez S, de Lera AR, Laudet V, Holland LZ, Schubert M. Retinoic acid signaling targets Hox genes during the amphioxus gastrula stage: insights into early anterior-posterior patterning of the chordate body plan. Developmental Biology. 338: 98-106. PMID 19914237 DOI: 10.1016/j.ydbio.2009.11.016  0.56
2009 Yu JK, Holland LZ. Extraction of RNA from small amounts of amphioxus embryos for cDNA synthesis by RT-PCR. Cold Spring Harbor Protocols. 2009: pdb.prot5289. PMID 20147274 DOI: 10.1101/pdb.prot5289  0.96
2009 Yu JK, Holland LZ. Extraction of RNA from amphioxus embryos or adult amphioxus tissue. Cold Spring Harbor Protocols. 2009: pdb.prot5288. PMID 20147273 DOI: 10.1101/pdb.prot5288  0.96
2009 Yu JK, Holland LZ. Extraction of DNA from adult amphioxus tissue. Cold Spring Harbor Protocols. 2009: pdb.prot5287. PMID 20147272 DOI: 10.1101/pdb.prot5287  0.96
2009 Yu JK, Holland LZ. Amphioxus whole-mount in situ hybridization. Cold Spring Harbor Protocols. 2009: pdb.prot5286. PMID 20147271 DOI: 10.1101/pdb.prot5286  0.96
2009 Yu JK, Holland LZ. Amphioxus (Branchiostoma floridae) spawning and embryo collection. Cold Spring Harbor Protocols. 2009: pdb.prot5285. PMID 20147270 DOI: 10.1101/pdb.prot5285  0.96
2009 Yu JK, Holland LZ. Cephalochordates (amphioxus or lancelets): a model for understanding the evolution of chordate characters. Cold Spring Harbor Protocols. 2009: pdb.emo130. PMID 20147258 DOI: 10.1101/pdb.emo130  0.96
2009 Onai T, Lin HC, Schubert M, Koop D, Osborne PW, Alvarez S, Alvarez R, Holland ND, Holland LZ. Retinoic acid and Wnt/beta-catenin have complementary roles in anterior/posterior patterning embryos of the basal chordate amphioxus. Developmental Biology. 332: 223-33. PMID 19497318 DOI: 10.1016/j.ydbio.2009.05.571  0.76
2009 Kaltenbach SL, Holland LZ, Holland ND, Koop D. Developmental expression of the three iroquois genes of amphioxus (BfIrxA, BfIrxB, and BfIrxC) with special attention to the gastrula organizer and anteroposterior boundaries in the central nervous system. Gene Expression Patterns : Gep. 9: 329-34. PMID 19233318 DOI: 10.1016/j.gep.2009.02.003  0.56
2008 Holland LZ, Holland ND, Gilland E. Amphioxus and the evolution of head segmentation. Integrative and Comparative Biology. 48: 630-46. PMID 21669822 DOI: 10.1093/Icb/Icn060  0.76
2008 Yu JK, Wang MC, Shin-I T, Kohara Y, Holland LZ, Satoh N, Satou Y. A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae. Development Genes and Evolution. 218: 723-7. PMID 18773220 DOI: 10.1007/S00427-008-0228-X  0.76
2008 Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, ... ... Holland LZ, et al. The amphioxus genome and the evolution of the chordate karyotype. Nature. 453: 1064-71. PMID 18563158 DOI: 10.1038/Nature06967  0.76
2008 Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Research. 18: 1100-11. PMID 18562680 DOI: 10.1101/Gr.073676.107  0.76
2007 Holland LZ, Holland ND. A revised fate map for amphioxus and the evolution of axial patterning in chordates. Integrative and Comparative Biology. 47: 360-72. PMID 21672845 DOI: 10.1093/icb/icm064  0.76
2007 Kozmik Z, Holland ND, Kreslova J, Oliveri D, Schubert M, Jonasova K, Holland LZ, Pestarino M, Benes V, Candiani S. Pax-Six-Eya-Dach network during amphioxus development: conservation in vitro but context specificity in vivo. Developmental Biology. 306: 143-59. PMID 17477914 DOI: 10.1016/j.ydbio.2007.03.009  0.56
2007 Rasmussen SL, Holland LZ, Schubert M, Beaster-Jones L, Holland ND. Amphioxus AmphiDelta: evolution of Delta protein structure, segmentation, and neurogenesis. Genesis (New York, N.Y. : 2000). 45: 113-22. PMID 17299746 DOI: 10.1002/dvg.20278  0.56
2007 Yu JK, Satou Y, Holland ND, Shin-I T, Kohara Y, Satoh N, Bronner-Fraser M, Holland LZ. Axial patterning in cephalochordates and the evolution of the organizer. Nature. 445: 613-7. PMID 17237766 DOI: 10.1038/Nature05472  0.76
2006 Lin HC, Holland LZ, Holland ND. Expression of the AmphiTcf gene in amphioxus: insights into the evolution of the TCF/LEF gene family during vertebrate evolution. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 235: 3396-403. PMID 17013891 DOI: 10.1002/dvdy.20971  0.76
2006 Langeland JA, Holland LZ, Chastain RA, Holland ND. An amphioxus LIM-homeobox gene, AmphiLim1/5, expressed early in the invaginating organizer region and later in differentiating cells of the kidney and central nervous system. International Journal of Biological Sciences. 2: 110-6. PMID 16763670  0.56
2006 Schubert M, Holland ND, Laudet V, Holland LZ. A retinoic acid-Hox hierarchy controls both anterior/posterior patterning and neuronal specification in the developing central nervous system of the cephalochordate amphioxus. Developmental Biology. 296: 190-202. PMID 16750825 DOI: 10.1016/j.ydbio.2006.04.457  0.56
2006 Castro LF, Rasmussen SL, Holland PW, Holland ND, Holland LZ. A Gbx homeobox gene in amphioxus: insights into ancestry of the ANTP class and evolution of the midbrain/hindbrain boundary. Developmental Biology. 295: 40-51. PMID 16687133 DOI: 10.1016/J.Ydbio.2006.03.003  0.56
2006 Holland ND, Holland LZ. Stage- and tissue-specific patterns of cell division in embryonic and larval tissues of amphioxus during normal development. Evolution & Development. 8: 142-9. PMID 16509893 DOI: 10.1111/j.1525-142X.2006.00085.x  0.76
2006 Beaster-Jones L, Horton AC, Gibson-Brown JJ, Holland ND, Holland LZ. The amphioxus T-box gene, AmphiTbx15/18/22, illuminates the origins of chordate segmentation. Evolution & Development. 8: 119-29. PMID 16509891 DOI: 10.1111/j.1525-142X.2006.00083.x  0.56
2005 Holland LZ, Panfilio KA, Chastain R, Schubert M, Holland ND. Nuclear beta-catenin promotes non-neural ectoderm and posterior cell fates in amphioxus embryos. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 233: 1430-43. PMID 15973712 DOI: 10.1002/dvdy.20473  0.56
2005 Bardet PL, Schubert M, Horard B, Holland LZ, Laudet V, Holland ND, Vanacker JM. Expression of estrogen-receptor related receptors in amphioxus and zebrafish: implications for the evolution of posterior brain segmentation at the invertebrate-to-vertebrate transition. Evolution & Development. 7: 223-33. PMID 15876195 DOI: 10.1111/j.1525-142X.2005.05025.x  0.56
2005 Schubert M, Yu JK, Holland ND, Escriva H, Laudet V, Holland LZ. Retinoic acid signaling acts via Hox1 to establish the posterior limit of the pharynx in the chordate amphioxus. Development (Cambridge, England). 132: 61-73. PMID 15576409 DOI: 10.1242/dev.01554  0.96
2004 Holland LZ, Yu JK. Cephalochordate (amphioxus) embryos: procurement, culture, and basic methods. Methods in Cell Biology. 74: 195-215. PMID 15575608  0.96
2004 Yu JK, Holland ND, Holland LZ. Tissue-specific expression of FoxD reporter constructs in amphioxus embryos. Developmental Biology. 274: 452-61. PMID 15385171 DOI: 10.1016/j.ydbio.2004.07.010  0.96
2004 Schubert M, Holland ND, Escriva H, Holland LZ, Laudet V. Retinoic acid influences anteroposterior positioning of epidermal sensory neurons and their gene expression in a developing chordate (amphioxus). Proceedings of the National Academy of Sciences of the United States of America. 101: 10320-5. PMID 15226493 DOI: 10.1073/pnas.0403216101  0.56
2003 Gibson-Brown JJ, Osoegawa K, McPherson JD, Waterston RH, De Jong PJ, Rokhsar DS, Holland LZ. A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 300: 5-22. PMID 14984031 DOI: 10.1002/Jez.B.42  0.76
2003 Mazet F, Yu JK, Liberles DA, Holland LZ, Shimeld SM. Phylogenetic relationships of the Fox (Forkhead) gene family in the Bilateria. Gene. 316: 79-89. PMID 14563554 DOI: 10.1016/S0378-1119(03)00741-8  0.76
2003 Schubert M, Meulemans D, Bronner-Fraser M, Holland LZ, Holland ND. Differential mesodermal expression of two amphioxus MyoD family members (AmphiMRF1 and AmphiMRF2). Gene Expression Patterns : Gep. 3: 199-202. PMID 12711549 DOI: 10.1016/S1567-133X(02)00099-6  0.56
2003 Yu JK, Holland ND, Holland LZ. AmphiFoxQ2, a novel winged helix/forkhead gene, exclusively marks the anterior end of the amphioxus embryo. Development Genes and Evolution. 213: 102-5. PMID 12632180 DOI: 10.1007/s00427-003-0302-3  0.96
2003 Holland ND, Venkatesh TV, Holland LZ, Jacobs DK, Bodmer R. AmphiNk2-tin, an amphioxus homeobox gene expressed in myocardial progenitors: insights into evolution of the vertebrate heart. Developmental Biology. 255: 128-37. PMID 12618138 DOI: 10.1016/S0012-1606(02)00050-7  0.76
2002 Yu JK, Holland LZ, Holland ND. An amphioxus nodal gene (AmphiNodal) with early symmetrical expression in the organizer and mesoderm and later asymmetrical expression associated with left-right axis formation. Evolution & Development. 4: 418-25. PMID 12492142  0.96
2002 Yu JK, Holland ND, Holland LZ. An amphioxus winged helix/forkhead gene, AmphiFoxD: insights into vertebrate neural crest evolution. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 225: 289-97. PMID 12412011 DOI: 10.1002/dvdy.10173  0.96
2002 Escriva H, Holland ND, Gronemeyer H, Laudet V, Holland LZ. The retinoic acid signaling pathway regulates anterior/posterior patterning in the nerve cord and pharynx of amphioxus, a chordate lacking neural crest. Development (Cambridge, England). 129: 2905-16. PMID 12050138  0.56
2002 Yu JK, Holland LZ, Jamrich M, Blitz IL, Hollan ND. AmphiFoxE4, an amphioxus winged helix/forkhead gene encoding a protein closely related to vertebrate thyroid transcription factor-2: expression during pharyngeal development. Evolution & Development. 4: 9-15. PMID 11868660  0.96
2002 Krelová J, Holland LZ, Schubert M, Burgtorf C, Benes V, Kozmik Z. Functional equivalency of amphioxus and vertebrate Pax258 transcription factors suggests that the activation of mid-hindbrain specific genes in vertebrates occurs via the recruitment of Pax regulatory elements. Gene. 282: 143-50. PMID 11814686  0.32
2002 Holland LZ. Heads or tails? Amphioxus and the evolution of anterior-posterior patterning in deuterostomes. Developmental Biology. 241: 209-28. PMID 11784106 DOI: 10.1006/dbio.2001.0503  0.76
1997 Kusakabe R, Kusakabe T, Satoh N, Holland ND, Holland LZ. Differential gene expression and intracellular mRNA localization of amphioxus actin isoforms throughout development: Implications for conserved mechanisms of chordate development. Development Genes and Evolution. 207: 203-215. PMID 27747419 DOI: 10.1007/S004270050109  0.56
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