Janet K. Jansson - Publications

Affiliations: 
2014- EBSD Pacific Northwest National Laboratory, USA 
Area:
Microbial Ecology

203 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Xu C, Couvillion SP, Sontag RL, Isern NG, Maezato Y, Lindemann SR, Roy Chowdhury T, Zhao R, Morton BR, Chu RK, Moore RJ, Jansson JK, Bailey VL, Mouser PJ, Romine MF, et al. MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments. Msystems. e0105820. PMID 34061574 DOI: 10.1128/mSystems.01058-20  0.04
2021 Neal AL, Hughes D, Clark IM, Jansson JK, Hirsch PR. Microbiome Aggregated Traits and Assembly Are More Sensitive to Soil Management than Diversity. Msystems. e0105620. PMID 34042469 DOI: 10.1128/mSystems.01056-20  1
2021 Bhattacharjee A, Anderson LN, Alfaro T, Porras-Alfaro A, Jumpponen A, Hofmockel KS, Jansson JK, Anderton CR, Nelson WC. Draft Genome Sequence of sp. Strain DS 682, a Novel Fungal Isolate from the Grass Rhizosphere. Microbiology Resource Announcements. 10. PMID 33414283 DOI: 10.1128/MRA.00884-20  0.01
2021 Bhattacharjee A, Anderson LN, Alfaro T, Porras-Alfaro A, Jumpponen A, Hofmockel KS, Jansson JK, Anderton CR, Nelson WC. Draft Genome Sequence of sp. Strain DS 682, a Novel Fungal Isolate from the Grass Rhizosphere. Microbiology Resource Announcements. 10. PMID 33414283 DOI: 10.1128/MRA.00884-20  0.01
2021 Boiteau RM, Markillie LM, Hoyt DW, Hu D, Chu RK, Mitchell HD, Pasa-Tolic L, Jansson JK, Jansson C. Metabolic Interactions between and Pseudomonas fluorescens under Controlled Iron-Limited Conditions. Msystems. 6. PMID 33402348 DOI: 10.1128/mSystems.00580-20  0.08
2021 Boiteau RM, Markillie LM, Hoyt DW, Hu D, Chu RK, Mitchell HD, Pasa-Tolic L, Jansson JK, Jansson C. Metabolic Interactions between and Pseudomonas fluorescens under Controlled Iron-Limited Conditions. Msystems. 6. PMID 33402348 DOI: 10.1128/mSystems.00580-20  0.08
2020 Kim YM, Snijders AM, Brislawn CJ, Stratton KG, Zink EM, Fansler SJ, Metz TO, Mao JH, Jansson JK. Corrigendum: Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome. Frontiers in Molecular Biosciences. 7: 619718. PMID 33732731 DOI: 10.3389/fmolb.2020.619718  0.01
2020 Kim YM, Snijders AM, Brislawn CJ, Stratton KG, Zink EM, Fansler SJ, Metz TO, Mao JH, Jansson JK. Corrigendum: Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome. Frontiers in Molecular Biosciences. 7: 619718. PMID 33732731 DOI: 10.3389/fmolb.2020.619718  0.01
2020 Suskind DL, Lee D, Kim YM, Wahbeh G, Singh N, Braly K, Nuding M, Nicora CD, Purvine SO, Lipton MS, Jansson JK, Nelson WC. The Specific Carbohydrate Diet and Diet Modification as Induction Therapy for Pediatric Crohn's Disease: A Randomized Diet Controlled Trial. Nutrients. 12. PMID 33291229 DOI: 10.3390/nu12123749  1
2020 Weitz KK, Smith ML, Hixson KK, Hill EA, Jansson JK, Hofmockel KS, Lipton MS. Real-Time Mass Spectrometry Measurements of Respiration Rates in Biological Systems. Journal of the American Society For Mass Spectrometry. PMID 33258588 DOI: 10.1021/jasms.0c00251  0.01
2020 Jurelevicius D, Cotta SR, Montezzi LF, Dias ACF, Mason OU, Picão RC, Jansson JK, Seldin L. Enrichment of potential pathogens in marine microbiomes with different degrees of anthropogenic activity. Environmental Pollution (Barking, Essex : 1987). 115757. PMID 33168375 DOI: 10.1016/j.envpol.2020.115757  1
2020 Bradley R, Langley BO, Ryan JJ, Phipps J, Hanes DA, Stack E, Jansson JK, Metz TO, Stevens JF. Correction to: Xanthohumol microbiome and signature in healthy adults (the XMaS trial): a phase I triple-masked, placebo-controlled clinical trial. Trials. 21: 885. PMID 33106168 DOI: 10.1186/s13063-020-04834-w  0.01
2020 Zegeye EK, Sadler NC, Lomas GX, Attah K, Jansson JK, Hofmockel KS, Anderton CR, Wright A. Activity-based protein profiling of chitin catabolism. Chembiochem : a European Journal of Chemical Biology. PMID 33049124 DOI: 10.1002/cbic.202000616  0.01
2020 Bradley R, Langley BO, Ryan JJ, Phipps J, Hanes DA, Stack E, Jansson JK, Metz TO, Stevens JF. Xanthohumol microbiome and signature in healthy adults (the XMaS trial): a phase I triple-masked, placebo-controlled clinical trial. Trials. 21: 835. PMID 33028396 DOI: 10.1186/s13063-020-04769-2  0.01
2020 McClure R, Naylor D, Farris Y, Davison M, Fansler SJ, Hofmockel KS, Jansson JK. Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome. Frontiers in Microbiology. 11: 1987. PMID 32983014 DOI: 10.3389/Fmicb.2020.01987  0.01
2020 Kabwe MH, Vikram S, Mulaudzi K, Jansson JK, Makhalanyane TP. The gut mycobiota of rural and urban individuals is shaped by geography. Bmc Microbiology. 20: 257. PMID 32807105 DOI: 10.1186/s12866-020-01907-3  0.01
2020 Nelson WC, Anderson LN, Wu R, McDermott JE, Bell SL, Jumpponen A, Fansler SJ, Tyrrell KJ, Farris Y, Hofmockel KS, Jansson JK. Terabase Metagenome Sequencing of Grassland Soil Microbiomes. Microbiology Resource Announcements. 9. PMID 32763940 DOI: 10.1128/MRA.00718-20  0.01
2020 Naylor D, Fansler S, Brislawn C, Nelson WC, Hofmockel KS, Jansson JK, McClure R. Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules. Mbio. 11. PMID 32636252 DOI: 10.1128/Mbio.01349-20  0.01
2020 McClure RS, Lee JY, Chowdhury TR, Bottos EM, White RA, Kim YM, Nicora CD, Metz TO, Hofmockel KS, Jansson JK, Song HS. Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations. Scientific Reports. 10: 10882. PMID 32616808 DOI: 10.1038/S41598-020-67878-7  0.01
2020 Lee JY, Sadler NC, Egbert RG, Anderton CR, Hofmockel KS, Jansson JK, Song HS. Deep learning predicts microbial interactions from self-organized spatiotemporal patterns. Computational and Structural Biotechnology Journal. 18: 1259-1269. PMID 32612750 DOI: 10.1016/J.Csbj.2020.05.023  0.01
2020 Ma B, Wang Y, Ye S, Liu S, Stirling E, Gilbert JA, Faust K, Knight R, Jansson JK, Cardona C, Röttjers L, Xu J. Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. Microbiome. 8: 82. PMID 32498714 DOI: 10.1186/S40168-020-00857-2  1
2020 Mao JH, Kim YM, Zhou YX, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y, Peisl BYL, Celniker SE, Threadgill DW, Wilmes P, Orr G, ... ... Jansson JK, et al. Correction to: Genetic and metabolic links between the murine microbiome and memory. Microbiome. 8: 73. PMID 32466793 DOI: 10.1186/S40168-020-00870-5  0.01
2020 Mao JH, Kim YM, Zhou YX, Hu D, Zhong C, Chang H, Brislawn C, Langley S, Wang Y, Peisl BYL, Celniker SE, Threadgill DW, Wilmes P, Orr G, Metz TO, ... Jansson JK, et al. Genetic and metabolic links between the murine microbiome and memory. Microbiome. 8: 53. PMID 32299497 DOI: 10.1186/S40168-020-00817-W  0.01
2020 Bhattacharjee A, Velickovic D, Wietsma TW, Bell SL, Jansson JK, Hofmockel KS, Anderton CR. Visualizing Microbial Community Dynamics via a Controllable Soil Environment. Msystems. 5. PMID 32047062 DOI: 10.1128/mSystems.00645-19  0.01
2019 Burnum-Johnson KE, Zheng X, Dodds JN, Ash J, Fourches D, Nicora CD, Wendler JP, Metz TO, Waters KM, Jansson JK, Smith RD, Baker ES. Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples. Trends in Analytical Chemistry : Trac. 116: 292-299. PMID 31798197 DOI: 10.1016/J.Trac.2019.04.022  1
2019 Prescott SL, Hancock T, Bland J, van den Bosch M, Jansson JK, Johnson CC, Kondo M, Katz D, Kort R, Kozyrskyj A, Logan AC, Lowry CA, Nanan R, Poland B, Robinson J, et al. Eighth Annual Conference of inVIVO Planetary Health: From Challenges to Opportunities. International Journal of Environmental Research and Public Health. 16. PMID 31694316 DOI: 10.3390/Ijerph16214302  0.01
2019 Kim YM, Snijders AM, Brislawn CJ, Stratton KG, Zink EM, Fansler SJ, Metz TO, Mao JH, Jansson JK. Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome. Frontiers in Molecular Biosciences. 6: 108. PMID 31681796 DOI: 10.3389/Fmolb.2019.00108  0.01
2019 Jansson JK, Hofmockel KS. Soil microbiomes and climate change. Nature Reviews. Microbiology. PMID 31586158 DOI: 10.1038/S41579-019-0265-7  0.01
2019 Cristea IM, Dorrestein PC, Eisen JA, Gilbert JA, Huber JA, Jansson JK, Knight R, Pollard KS, Raes J, Silver PA, Webster NS, Xu J. Early-Career Scientists Shaping the World. Msystems. 4. PMID 31219787 DOI: 10.1128/mSystems.00196-19  1
2019 Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, ... Jansson JK, et al. Scientists' warning to humanity: microorganisms and climate change. Nature Reviews. Microbiology. PMID 31213707 DOI: 10.1038/S41579-019-0222-5  0.01
2019 Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, ... ... Jansson JK, et al. Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations. Msystems. 4. PMID 31186334 DOI: 10.1128/mSystems.00061-19  0.01
2019 Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, ... ... Jansson JK, et al. Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice. Cell. 177: 1600-1618.e17. PMID 31150625 DOI: 10.1016/J.Cell.2019.05.004  1
2019 Lloyd-Price J, Arze C, Ananthakrishnan AN, Schirmer M, Avila-Pacheco J, Poon TW, Andrews E, Ajami NJ, Bonham KS, Brislawn CJ, Casero D, Courtney H, Gonzalez A, Graeber TG, Hall AB, ... ... Jansson JK, et al. Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. Nature. 569: 655-662. PMID 31142855 DOI: 10.1038/S41586-019-1237-9  1
2019 Zegeye EK, Brislawn CJ, Farris Y, Fansler SJ, Hofmockel KS, Jansson JK, Wright AT, Graham EB, Naylor D, McClure RS, Bernstein HC. Selection, Succession, and Stabilization of Soil Microbial Consortia. Msystems. 4. PMID 31120029 DOI: 10.1128/mSystems.00055-19  0.01
2019 Björkqvist O, Repsilber D, Seifert M, Brislawn C, Jansson J, Engstrand L, Rangel I, Halfvarson J. Alterations in the relative abundance of Faecalibacterium prausnitzii correlate with changes in fecal calprotectin in patients with ileal Crohn's disease: a longitudinal study. Scandinavian Journal of Gastroenterology. 54: 577-585. PMID 31104514 DOI: 10.1080/00365521.2019.1599417  0.01
2019 Zegeye EK, Brislawn CJ, Farris Y, Fansler SJ, Hofmockel KS, Jansson JK, Wright AT, Graham EB, Naylor D, McClure RS, Bernstein HC. Selection, Succession, and Stabilization of Soil Microbial Consortia. Msystems. 4. PMID 31098394 DOI: 10.1128/mSystems.00055-19  0.01
2019 Hutchins DA, Jansson JK, Remais JV, Rich VI, Singh BK, Trivedi P. Climate change microbiology - problems and perspectives. Nature Reviews. Microbiology. 17: 391-396. PMID 31092905 DOI: 10.1038/S41579-019-0178-5  0.01
2019 Jansson JK, Hofmockel KS. Corrigendum to "The soil microbiome - from metagenomics to metaphenomics" [Curr Opin Micrbiol 43 (June 2018) 162-168]. Current Opinion in Microbiology. PMID 31085071 DOI: 10.1016/J.Mib.2019.04.004  0.01
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Jansson JK, et al. Consent insufficient for data release-Response. Science (New York, N.Y.). 364: 446. PMID 31048484 DOI: 10.1126/Science.Aax7509  1
2019 Wang P, Wang Y, Langley SA, Zhou YX, Jen KY, Sun Q, Brislawn C, Rojas CM, Wahl KL, Wang T, Fan X, Jansson JK, Celniker SE, Zou X, Threadgill DW, et al. Diverse tumour susceptibility in Collaborative Cross mice: identification of a new mouse model for human gastric tumourigenesis. Gut. PMID 30842212 DOI: 10.1136/Gutjnl-2018-316691  0.01
2019 Blakeley-Ruiz JA, Erickson AR, Cantarel BL, Xiong W, Adams R, Jansson JK, Fraser CM, Hettich RL. Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn's remission patients despite temporal variations in microbial taxa, genomes, and proteomes. Microbiome. 7: 18. PMID 30744677 DOI: 10.1186/S40168-019-0631-8  1
2019 Vera-Gargallo B, Chowdhury TR, Brown J, Fansler SJ, Durán-Viseras A, Sánchez-Porro C, Bailey VL, Jansson JK, Ventosa A. Spatial distribution of prokaryotic communities in hypersaline soils. Scientific Reports. 9: 1769. PMID 30741985 DOI: 10.1038/S41598-018-38339-Z  0.01
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Jansson JK, et al. Toward unrestricted use of public genomic data. Science (New York, N.Y.). 363: 350-352. PMID 30679363 DOI: 10.1126/Science.Aaw1280  1
2018 Whidbey C, Sadler NC, Nair RN, Volk RF, DeLeon AJ, Bramer LM, Fansler SJ, Hansen JR, Shukla AK, Jansson JK, Thrall BD, Wright AT. A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome. Journal of the American Chemical Society. PMID 30541282 DOI: 10.1021/Jacs.8B09668  0.01
2018 Calderoli PA, Espínola FJ, Dionisi HM, Gil MN, Jansson JK, Lozada M. Predominance and high diversity of genes associated to denitrification in metagenomes of subantarctic coastal sediments exposed to urban pollution. Plos One. 13: e0207606. PMID 30496195 DOI: 10.1371/Journal.Pone.0207606  0.01
2018 Boiteau RM, Fansler SJ, Farris Y, Shaw JB, Koppenaal DW, Pasa-Tolic L, Jansson JK. Siderophore profiling of co-habitating soil bacteria by ultra-high resolution mass spectrometry. Metallomics : Integrated Biometal Science. PMID 30427023 DOI: 10.1039/C8Mt00252E  0.01
2018 Vital M, Howe A, Bergeron N, Krauss RM, Jansson JK, Tiedje JM. Metagenomic insights into resistant starch degradation by human gut microbiota. Applied and Environmental Microbiology. PMID 30266729 DOI: 10.1128/Aem.01562-18  1
2018 Mackelprang R, Grube AM, Lamendella R, Jesus EDC, Copeland A, Liang C, Jackson RD, Rice CW, Kapucija S, Parsa B, Tringe SG, Tiedje JM, Jansson JK. Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States. Frontiers in Microbiology. 9: 1775. PMID 30158906 DOI: 10.3389/Fmicb.2018.01775  1
2018 Kimbrel JA, Ballor N, Wu YW, David MM, Hazen TC, Simmons BA, Singer SW, Jansson JK. Microbial Community Structure and Functional Potential Along a Hypersaline Gradient. Frontiers in Microbiology. 9: 1492. PMID 30042744 DOI: 10.3389/Fmicb.2018.01492  1
2018 Stegen JC, Bottos EM, Jansson JK. A unified conceptual framework for prediction and control of microbiomes. Current Opinion in Microbiology. 44: 20-27. PMID 30007202 DOI: 10.1016/J.Mib.2018.06.002  0.01
2018 Phoma S, Vikram S, Jansson JK, Ansorge IJ, Cowan DA, Van de Peer Y, Makhalanyane TP. Agulhas Current properties shape microbial community diversity and potential functionality. Scientific Reports. 8: 10542. PMID 30002454 DOI: 10.1038/S41598-018-28939-0  0.01
2018 Müller O, Bang-Andreasen T, White RA, Elberling B, Taş N, Kneafsey T, Jansson JK, Øvreås L. Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates. Environmental Microbiology. PMID 29971895 DOI: 10.1111/1462-2920.14348  1
2018 Bottos EM, Kennedy DW, Romero EB, Fansler SJ, Brown JM, Bramer LM, Chu RK, Tfaily MM, Jansson JK, Stegen JC. Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities. Fems Microbiology Ecology. PMID 29912311 DOI: 10.1093/Femsec/Fiy110  0.01
2018 Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA, Roy Chowdhury T, Kyle JE, Kim YM, Smith RD, Metz TO, Jansson JK, Baker ES. The MPLEx Protocol for Multi-omic Analyses of Soil Samples. Journal of Visualized Experiments : Jove. PMID 29912205 DOI: 10.3791/57343  1
2018 Noguti J, Chan AA, Bandera B, Brislawn CJ, Protic M, Sim MS, Jansson JK, Bilchik AJ, Lee DJ. Both the intratumoral immune and microbial microenvironment are linked to recurrence in human colon cancer: results from a prospective, multicenter nodal ultrastaging trial. Oncotarget. 9: 23564-23576. PMID 29805756 DOI: 10.18632/Oncotarget.25276  0.01
2018 Gilbert JA, Jansson JK, Knight R. Earth Microbiome Project and Global Systems Biology. Msystems. 3. PMID 29657969 DOI: 10.1128/mSystems.00217-17  1
2018 Gilbert JA, Blaser MJ, Caporaso JG, Jansson JK, Lynch SV, Knight R. Current understanding of the human microbiome. Nature Medicine. 24: 392-400. PMID 29634682 DOI: 10.1038/Nm.4517  1
2018 Taş N, Prestat E, Wang S, Wu Y, Ulrich C, Kneafsey T, Tringe SG, Torn MS, Hubbard SS, Jansson JK. Landscape topography structures the soil microbiome in arctic polygonal tundra. Nature Communications. 9: 777. PMID 29472560 DOI: 10.1038/S41467-018-03089-Z  1
2018 Jansson JK, Hofmockel KS. The soil microbiome-from metagenomics to metaphenomics. Current Opinion in Microbiology. 43: 162-168. PMID 29454931 DOI: 10.1016/J.Mib.2018.01.013  0.01
2017 Maier TV, Lucio M, Lee LH, VerBerkmoes NC, Brislawn CJ, Bernhardt J, Lamendella R, McDermott JE, Bergeron N, Heinzmann SS, Morton JT, González A, Ackermann G, Knight R, Riedel K, ... ... Jansson JK, et al. Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome. Mbio. 8. PMID 29042495 DOI: 10.1128/Mbio.01343-17  1
2017 Handley KM, Piceno YM, Hu P, Tom LM, Mason OU, Andersen GL, Jansson JK, Gilbert JA. Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill. The Isme Journal. PMID 28777379 DOI: 10.1038/Ismej.2017.110  1
2017 Espínola F, Dionisi HM, Borglin S, Brislawn CJ, Jansson JK, Mac Cormack WP, Carroll J, Sjöling S, Lozada M. Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes. Microbial Ecology. PMID 28702706 DOI: 10.1007/S00248-017-1028-5  1
2017 Musumeci MA, Lozada M, Rial DV, Mac Cormack WP, Jansson JK, Sjöling S, Carroll J, Dionisi HM. Prospecting Biotechnologically-Relevant Monooxygenases from Cold Sediment Metagenomes: An In Silico Approach. Marine Drugs. 15. PMID 28397770 DOI: 10.3390/Md15040114  1
2017 Bernstein HC, McClure RS, Thiel V, Sadler NC, Kim YM, Chrisler WB, Hill EA, Bryant DA, Romine MF, Jansson JK, Fredrickson JK, Beliaev AS. Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership. Msystems. 2. PMID 28289730 DOI: 10.1128/mSystems.00181-16  0.01
2017 Halfvarson J, Brislawn CJ, Lamendella R, Vázquez-Baeza Y, Walters WA, Bramer LM, D'Amato M, Bonfiglio F, McDonald D, Gonzalez A, McClure EE, Dunklebarger MF, Knight R, Jansson JK. Dynamics of the human gut microbiome in inflammatory bowel disease. Nature Microbiology. 2: 17004. PMID 28191884 DOI: 10.1038/Nmicrobiol.2017.4  1
2017 Men Y, Yu K, Bælum J, Gao Y, Tremblay J, Prestat E, Stenuit B, Tringe SG, Jansson J, Zhang T, Alvarez-Cohen L. Metagenomic and metatranscriptomic analyses reveal structure and dynamics of a dechlorinating community containing Dehalococcoides mccartyi and corrinoid-providing microorganisms under cobalamin-limited condition. Applied and Environmental Microbiology. PMID 28188205 DOI: 10.1128/Aem.03508-16  1
2016 Bergeron N, Williams PT, Lamendella R, Faghihnia N, Grube A, Li X, Wang Z, Knight R, Jansson JK, Hazen SL, Krauss RM. Diets high in resistant starch increase plasma levels of trimethylamine-N-oxide, a gut microbiome metabolite associated with CVD risk. The British Journal of Nutrition. 1-10. PMID 27993177 DOI: 10.1017/S0007114516004165  1
2016 Snijders AM, Langley SA, Kim YM, Brislawn CJ, Noecker C, Zink EM, Fansler SJ, Casey CP, Miller DR, Huang Y, Karpen GH, Celniker SE, Brown JB, Borenstein E, Jansson JK, et al. Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome. Nature Microbiology. 2: 16221. PMID 27892936 DOI: 10.1038/Nmicrobiol.2016.221  0.01
2016 White RA, Bottos EM, Roy Chowdhury T, Zucker JD, Brislawn CJ, Nicora CD, Fansler SJ, Glaesemann KR, Glass K, Jansson JK. Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes. Msystems. 1. PMID 27822530 DOI: 10.1128/mSystems.00045-16  0.04
2016 Walters W, Hyde ER, Berg-Lyons D, Ackermann G, Humphrey G, Parada A, Gilbert JA, Jansson JK, Caporaso JG, Fuhrman JA, Apprill A, Knight R. Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys. Msystems. 1. PMID 27822518 DOI: 10.1128/mSystems.00009-15  1
2016 López JL, Golemba M, Hernández E, Lozada M, Dionisi HM, Jansson J, Carroll J, Lundgren L, Sjöling S, Cormack WP. Microbial and viral-like rhodopsins present in coastal marine sediments from four polar and subpolar regions. Fems Microbiology Ecology. PMID 27815287 DOI: 10.1093/Femsec/Fiw216  1
2016 Bernstein HC, Brislawn C, Renslow RS, Dana K, Morton B, Lindemann SR, Song HS, Atci E, Beyenal H, Fredrickson JK, Jansson JK, Moran JJ. Trade-offs between microbiome diversity and productivity in a stratified microbial mat. The Isme Journal. PMID 27801910 DOI: 10.1038/Ismej.2016.133  0.01
2016 Armstrong A, Valverde A, Ramond JB, Makhalanyane TP, Jansson JK, Hopkins DW, Aspray TJ, Seely M, Trindade MI, Cowan DA. Temporal dynamics of hot desert microbial communities reveal structural and functional responses to water input. Scientific Reports. 6: 34434. PMID 27680878 DOI: 10.1038/Srep34434  0.01
2016 Jansson JK, Baker ES. A multi-omic future for microbiome studies. Nature Microbiology. 1: 16049. PMID 27572648 DOI: 10.1038/Nmicrobiol.2016.49  0.01
2016 Nakamura YK, Metea C, Karstens L, Asquith M, Gruner H, Moscibrocki C, Lee I, Brislawn CJ, Jansson JK, Rosenbaum JT, Lin P. Gut Microbial Alterations Associated With Protection From Autoimmune Uveitis. Investigative Ophthalmology & Visual Science. 57: 3747-3758. PMID 27415793 DOI: 10.1167/Iovs.16-19733  0.01
2016 Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature. 535: 94-103. PMID 27383984 DOI: 10.1038/Nature18850  1
2016 Matos MN, Lozada M, Anselmino LE, Musumeci MA, Henrissat B, Jansson JK, Mac Cormack WP, Carroll J, Sjöling S, Lundgren L, Dionisi HM. Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments. Environmental Microbiology. PMID 27348213 DOI: 10.1111/1462-2920.13433  1
2016 Jansson JK. Spotlight on… Janet K. Jansson. Fems Microbiology Letters. 363. PMID 27343130 DOI: 10.1093/Femsle/Fnw135  0.01
2016 Noecker C, Eng A, Srinivasan S, Theriot CM, Young VB, Jansson JK, Fredricks DN, Borenstein E. Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation. Msystems. 1. PMID 27239563 DOI: 10.1128/mSystems.00013-15  0.01
2016 Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, et al. Back to the Future of Soil Metagenomics. Frontiers in Microbiology. 7: 73. PMID 26903960 DOI: 10.3389/Fmicb.2016.00073  1
2016 Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R, Miller JF, Ozcan A, Prather KA, Quake SR, Ruby EG, et al. Tools for the Microbiome: Nano and Beyond. Acs Nano. 10: 6-37. PMID 26695070 DOI: 10.1021/Acsnano.5B07826  1
2016 Guibert LM, Loviso CL, Borglin S, Jansson JK, Dionisi HM, Lozada M. Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments. Microbial Ecology. 71: 100-12. PMID 26547568 DOI: 10.1007/S00248-015-0698-0  1
2015 Dicksved J, Jansson JK, Lindberg JE. Fecal microbiome of growing pigs fed a cereal based diet including chicory (Cichorium intybus L.) or ribwort (Plantago lanceolata L.) forage. Journal of Animal Science and Biotechnology. 6: 53. PMID 26688727 DOI: 10.1186/S40104-015-0054-8  1
2015 Mao JH, Langley SA, Huang Y, Hang M, Bouchard KE, Celniker SE, Brown JB, Jansson JK, Karpen GH, Snijders AM. Identification of genetic factors that modify motor performance and body weight using Collaborative Cross mice. Scientific Reports. 5: 16247. PMID 26548763 DOI: 10.1038/Srep16247  1
2015 Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, et al. MICROBIOME. A unified initiative to harness Earth's microbiomes. Science (New York, N.Y.). 350: 507-8. PMID 26511287 DOI: 10.1126/Science.Aac8480  1
2015 Köberl M, White RA, Erschen S, Spanberger N, El-Arabi TF, Jansson JK, Berg G. Complete Genome Sequence of Bacillus amyloliquefaciens Strain Co1-6, a Plant Growth-Promoting Rhizobacterium of Calendula officinalis. Genome Announcements. 3. PMID 26272562 DOI: 10.1128/Genomea.00862-15  0.01
2015 Keravec M, Mounier J, Prestat E, Vallet S, Jansson JK, Burgaud G, Rosec S, Gouriou S, Rault G, Coton E, Barbier G, Héry-Arnaud G. Insights into the respiratory tract microbiota of patients with cystic fibrosis during early Pseudomonas aeruginosa colonization. Springerplus. 4: 405. PMID 26266076 DOI: 10.1186/S40064-015-1207-0  1
2015 Köberl M, White RA, Erschen S, El-Arabi TF, Jansson JK, Berg G. Draft Genome Sequence of Paenibacillus polymyxa Strain Mc5Re-14, an Antagonistic Root Endophyte of Matricaria chamomilla. Genome Announcements. 3. PMID 26251493 DOI: 10.1128/Genomea.00861-15  0.04
2015 Köberl M, White RA, Erschen S, El-Arabi TF, Jansson JK, Berg G. Draft Genome Sequence of Streptomyces sp. Strain Wb2n-11, a Desert Isolate with Broad-Spectrum Antagonism against Soilborne Phytopathogens. Genome Announcements. 3. PMID 26251492 DOI: 10.1128/Genomea.00860-15  0.01
2015 Carrillo-Araujo M, Taş N, Alcántara-Hernández RJ, Gaona O, Schondube JE, Medellín RA, Jansson JK, Falcón LI. Phyllostomid bat microbiome composition is associated to host phylogeny and feeding strategies. Frontiers in Microbiology. 6: 447. PMID 26042099 DOI: 10.3389/Fmicb.2015.00447  0.01
2015 Lipson DA, Raab TK, Parker M, Kelley ST, Brislawn CJ, Jansson J. Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils. Environmental Microbiology Reports. 7: 649-57. PMID 26034016 DOI: 10.1111/1758-2229.12301  0.01
2015 Schostag M, Stibal M, Jacobsen CS, Bælum J, Taş N, Elberling B, Jansson JK, Semenchuk P, Priemé A. Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. Frontiers in Microbiology. 6: 399. PMID 25983731 DOI: 10.3389/Fmicb.2015.00399  1
2015 Hultman J, Waldrop MP, Mackelprang R, David MM, McFarland J, Blazewicz SJ, Harden J, Turetsky MR, McGuire AD, Shah MB, VerBerkmoes NC, Lee LH, Mavrommatis K, Jansson JK. Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes. Nature. 521: 208-12. PMID 25739499 DOI: 10.1038/Nature14238  1
2014 Woo HL, Ballor NR, Hazen TC, Fortney JL, Simmons B, Davenport KW, Goodwin L, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, Jansson J, Kimbrel J, DeAngelis KM. Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2. Standards in Genomic Sciences. 9: 19. PMID 25566348 DOI: 10.1186/1944-3277-9-19  1
2014 Prestat E, David MM, Hultman J, Ta? N, Lamendella R, Dvornik J, Mackelprang R, Myrold DD, Jumpponen A, Tringe SG, Holman E, Mavromatis K, Jansson JK. FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Research. 42: e145. PMID 25260589 DOI: 10.1093/Nar/Gku702  1
2014 Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, et al. Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California. Standards in Genomic Sciences. 9: 1259-74. PMID 25197496 DOI: 10.4056/Sigs.5029016  1
2014 Gilbert JA, Jansson JK, Knight R. The Earth Microbiome project: successes and aspirations. Bmc Biology. 12: 69. PMID 25184604 DOI: 10.1186/S12915-014-0069-1  1
2014 Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, ... ... Jansson JK, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920  1
2014 Mason OU, Han J, Woyke T, Jansson JK. Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill. Frontiers in Microbiology. 5: 332. PMID 25071745 DOI: 10.3389/Fmicb.2014.00332  1
2014 Jansson JK, Taş N. The microbial ecology of permafrost. Nature Reviews. Microbiology. 12: 414-25. PMID 24814065 DOI: 10.1038/Nrmicro3262  1
2014 Lamendella R, Strutt S, Borglin S, Chakraborty R, Tas N, Mason OU, Hultman J, Prestat E, Hazen TC, Jansson JK. Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities. Frontiers in Microbiology. 5: 130. PMID 24772107 DOI: 10.3389/Fmicb.2014.00130  1
2014 Scott NM, Hess M, Bouskill NJ, Mason OU, Jansson JK, Gilbert JA. The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments. Frontiers in Microbiology. 5: 108. PMID 24723913 DOI: 10.3389/Fmicb.2014.00108  1
2014 TaÅŸ N, Prestat E, McFarland JW, Wickland KP, Knight R, Berhe AA, Jorgenson T, Waldrop MP, Jansson JK. Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest. The Isme Journal. 8: 1904-19. PMID 24722629 DOI: 10.1038/Ismej.2014.36  1
2014 Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Tackling soil diversity with the assembly of large, complex metagenomes. Proceedings of the National Academy of Sciences of the United States of America. 111: 4904-9. PMID 24632729 DOI: 10.1073/Pnas.1402564111  1
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2014 David MM, Cecillon S, Warne BM, Prestat E, Jansson JK, Vogel TM. Microbial ecology of chlorinated solvent biodegradation. Environmental Microbiology. PMID 24517489 DOI: 10.1111/1462-2920.12413  1
2014 Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, ... ... Jansson JK, et al. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. The Isme Journal. 8: 1464-75. PMID 24451203 DOI: 10.1038/Ismej.2013.254  1
2014 Myrold DD, Zeglin LH, Jansson JK. The potential of metagenomic approaches for understanding soil microbial processes Soil Science Society of America Journal. 78: 3-10. DOI: 10.2136/Sssaj2013.07.0287Dgs  1
2014 Ravel J, Blaser MJ, Braun J, Brown E, Bushman FD, Chang EB, Davies J, Dewey KG, Dinan T, Dominguez-Bello M, Erdman SE, Finlay BB, Garrett WS, Huffnagle GB, Huttenhower C, ... Jansson J, et al. Human microbiome science: Vision for the future, Bethesda, MD, July 24 to 26, 2013 Microbiome. 2. DOI: 10.1186/2049-2618-2-16  1
2014 Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Tackling soil diversity with the assembly of large, complex metagenomes (Proceedings of the National Academy of Sciences of the United States of America (2014) 111, 13, (4904-4909) doi:10.1073/pnas.1402564111) Proceedings of the National Academy of Sciences of the United States of America. 111: 6115. DOI: 10.1073/Pnas.1405719111  1
2014 Dionisi H, Matos M, Anselmino L, Lozada M, Cormack WM, Carroll J, Lundgren L, Sjöling S, Chavarría K, Henrissat B, Jansson J. Mining alginate lyases in sediment metagenomes from four geographically distant cold coastal environments New Biotechnology. 31. DOI: 10.1016/J.Nbt.2014.05.1771  1
2013 Lozupone CA, Stombaugh J, Gonzalez A, Ackermann G, Wendel D, Vázquez-Baeza Y, Jansson JK, Gordon JI, Knight R. Meta-analyses of studies of the human microbiota. Genome Research. 23: 1704-14. PMID 23861384 DOI: 10.1101/Gr.151803.112  1
2013 Nicora CD, Anderson BJ, Callister SJ, Norbeck AD, Purvine SO, Jansson JK, Mason OU, David MM, Jurelevicius D, Smith RD, Lipton MS. Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies. Proteomics. 13: 2776-85. PMID 23776032 DOI: 10.1002/Pmic.201300003  1
2013 Jansson JK, Prosser JI. Microbiology: The life beneath our feet. Nature. 494: 40-1. PMID 23389537 DOI: 10.1038/494040A  0.01
2012 Erickson AR, Cantarel BL, Lamendella R, Darzi Y, Mongodin EF, Pan C, Shah M, Halfvarson J, Tysk C, Henrissat B, Raes J, Verberkmoes NC, Fraser CM, Hettich RL, Jansson JK. Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. Plos One. 7: e49138. PMID 23209564 DOI: 10.1371/Journal.Pone.0049138  1
2012 Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. Diversity, stability and resilience of the human gut microbiota. Nature. 489: 220-30. PMID 22972295 DOI: 10.1038/Nature11550  1
2012 Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman HY, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, ... ... Jansson JK, et al. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. The Isme Journal. 6: 1715-27. PMID 22717885 DOI: 10.1038/Ismej.2012.59  1
2012 Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA. Unlocking the potential of metagenomics through replicated experimental design. Nature Biotechnology. 30: 513-20. PMID 22678395 DOI: 10.1038/Nbt.2235  1
2012 Lamendella R, VerBerkmoes N, Jansson JK. 'Omics' of the mammalian gut--new insights into function. Current Opinion in Biotechnology. 23: 491-500. PMID 22626866 DOI: 10.1016/J.Copbio.2012.01.016  1
2012 Baelum J, Borglin S, Chakraborty R, Fortney JL, Lamendella R, Mason OU, Auer M, Zemla M, Bill M, Conrad ME, Malfatti SA, Tringe SG, Holman HY, Hazen TC, Jansson JK. Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environmental Microbiology. 14: 2405-16. PMID 22616650 DOI: 10.1111/J.1462-2920.2012.02780.X  1
2012 Graham DE, Wallenstein MD, Vishnivetskaya TA, Waldrop MP, Phelps TJ, Pfiffner SM, Onstott TC, Whyte LG, Rivkina EM, Gilichinsky DA, Elias DA, Mackelprang R, VerBerkmoes NC, Hettich RL, Wagner D, ... ... Jansson JK, et al. Microbes in thawing permafrost: the unknown variable in the climate change equation. The Isme Journal. 6: 709-12. PMID 22094350 DOI: 10.1038/Ismej.2011.163  1
2012 Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, Zhou A, Lee YJ, Mason OU, Dubinsky EA, Chavarria KL, Tom LM, Fortney JL, Lamendella R, Jansson JK, D'haeseleer P, et al. Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume. The Isme Journal. 6: 451-60. PMID 21814288 DOI: 10.1038/Ismej.2011.91  1
2012 Jansson JK, Neufeld JD, Moran MA, Gilbert JA. Omics for understanding microbial functional dynamics. Environmental Microbiology. 14: 1-3. PMID 21651688 DOI: 10.1111/J.1462-2920.2011.02518.X  1
2011 Cantarel BL, Erickson AR, VerBerkmoes NC, Erickson BK, Carey PA, Pan C, Shah M, Mongodin EF, Jansson JK, Fraser-Liggett CM, Hettich RL. Strategies for metagenomic-guided whole-community proteomics of complex microbial environments. Plos One. 6: e27173. PMID 22132090 DOI: 10.1371/Journal.Pone.0027173  1
2011 Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature. 480: 368-71. PMID 22056985 DOI: 10.1038/Nature10576  1
2011 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Jansson J, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823  1
2011 Gilbert JA, Bailey M, Field D, Fierer N, Fuhrman JA, Hu B, Jansson J, Knight R, Kowalchuk GA, Kyrpides NC, Meyer F, Stevens R. The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011 Standards in Genomic Sciences. 5: 243-247. DOI: 10.4056/Sigs.2134923  1
2011 Jansson J. Towards tera terra: Terabase sequencing of terrestrial metagenomics Microbe Magazine. 6: 309-315. DOI: 10.1128/Microbe.6.309.1  0.01
2011 Willing BP, Jansson JK. The Gut Microbiota: Ecology and Function Lawrence Berkeley National Laboratory. 39-65. DOI: 10.1128/9781555816865.Ch3  0.01
2010 Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Glöckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, et al. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Standards in Genomic Sciences. 3: 249-53. PMID 21304728 DOI: 10.4056/Aigs.1443528  1
2010 Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, et al. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Standards in Genomic Sciences. 3: 243-8. PMID 21304727 DOI: 10.4056/Sigs.1433550  1
2010 Chourey K, Jansson J, Verberkmoes NC, Shah MB, Chavarria KL, Tom LM, Brodie EL, Hettich R{L. Direct cellular lysis/protein extraction protocol for soil metaproteomics. Journal of Proteome Research. 9: 6615-6622. PMID 20954746 DOI: 10.1021/Pr100787Q  1
2010 Willing BP, Dicksved J, Halfvarson J, Andersson AF, Lucio M, Zheng Z, Järnerot G, Tysk C, Jansson JK, Engstrand L. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology. 139: 1844-1854.e1. PMID 20816835 DOI: 10.1053/J.Gastro.2010.08.049  1
2010 Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (New York, N.Y.). 330: 204-8. PMID 20736401 DOI: 10.1126/Science.1195979  1
2010 Jansson JK, Fredrickson JK. Stewards of a changing planet: commentaries from ISME13 Plenary Lecturers. The Isme Journal. 4: 1079-80. PMID 20733576 DOI: 10.1038/Ismej.2010.114  0.01
2010 Jernberg C, Löfmark S, Edlund C, Jansson JK. Long-term impacts of antibiotic exposure on the human intestinal microbiota Microbiology. 156: 3216-3223. PMID 20705661 DOI: 10.1099/Mic.0.040618-0  1
2010 Jakobsson HE, Jernberg C, Andersson AF, Sjölund-Karlsson M, Jansson JK, Engstrand L. Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. Plos One. 5: e9836. PMID 20352091 DOI: 10.1371/Journal.Pone.0009836  1
2010 Khoruts A, Dicksved J, Jansson JK, Sadowsky MJ. Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea. Journal of Clinical Gastroenterology. 44: 354-60. PMID 20048681 DOI: 10.1097/Mcg.0B013E3181C87E02  1
2010 Hjort K, Bergström M, Adesina MF, Jansson JK, Smalla K, Sjöling S. Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil Fems Microbiology Ecology. 71: 197-207. PMID 19922433 DOI: 10.1111/J.1574-6941.2009.00801.X  1
2010 Hettich RL, Russell AL, VerBerkmoes NC, Shah M, Fraser-Liggett C, Jansson JK. Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities Bmc Bioinformatics. 11: 1-1. DOI: 10.1186/1471-2105-11-S4-O6  1
2010 Wessén E, Nyberg K, Jansson JK, Hallin S. Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management Applied Soil Ecology. 45: 193-200. DOI: 10.1016/J.Apsoil.2010.04.003  0.01
2009 Unell M, Abraham PE, Shah M, Zhang B, Rückert C, VerBerkmoes NC, Jansson JK. Impact of phenolic substrate and growth temperature on the Arthrobacter chlorophenolicus proteome. Journal of Proteome Research. 8: 1953-64. PMID 19714879 DOI: 10.1021/Pr800897C  1
2009 Jansson J, Willing B, Lucio M, Fekete A, Dicksved J, Halfvarson J, Tysk C, Schmitt-Kopplin P. Metabolomics reveals metabolic biomarkers of Crohn's disease. Plos One. 4: e6386. PMID 19636438 DOI: 10.1371/Journal.Pone.0006386  1
2009 Wu Z, Willing B, Bjerketorp J, Jansson JK, Hjort K. Soft inertial microfluidics for high throughput separation of bacteria from human blood cells. Lab On a Chip. 9: 1193-9. PMID 19370236 DOI: 10.1039/B817611F  1
2009 Dicksved J, Lindberg M, Rosenquist M, Enroth H, Jansson JK, Engstrand L. Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls. Journal of Medical Microbiology. 58: 509-16. PMID 19273648 DOI: 10.1099/Jmm.0.007302-0  1
2009 Willing B, Halfvarson J, Dicksved J, Rosenquist M, Järnerot G, Engstrand L, Tysk C, Jansson JK. Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease. Inflammatory Bowel Diseases. 15: 653-60. PMID 19023901 DOI: 10.1002/Ibd.20783  1
2009 Verberkmoes NC, Russell AL, Shah M, Godzik A, Rosenquist M, Halfvarson J, Lefsrud MG, Apajalahti J, Tysk C, Hettich RL, Jansson JK. Shotgun metaproteomics of the human distal gut microbiota. The Isme Journal. 3: 179-89. PMID 18971961 DOI: 10.1038/Ismej.2008.108  1
2009 Vogel TM, Simonet P, Hirsch PR, Jansson JK, Tiedje JM, van Elsas JD, Nalin R, Philippot L, Bailey MJ. Advantages of the metagenomic approach for soil exploration: Reply from Vogel et al. Nature Reviews Microbiology. 7: 756-757. DOI: 10.1038/Nrmicro2119-C3  1
2009 Vogel TM, Simonet P, Jansson JK, Hirsch PR, Tiedje JM, van Elsas JD, Bailey MJ, Nalin R, Philippot L. TerraGenome: A consortium for the sequencing of a soil metagenome Nature Reviews Microbiology. 7: 252. DOI: 10.1038/Nrmicro2119  1
2008 van Elsas JD, Costa R, Jansson J, Sjöling S, Bailey M, Nalin R, Vogel TM, van Overbeek L. The metagenomics of disease-suppressive soils - experiences from the METACONTROL project. Trends in Biotechnology. 26: 591-601. PMID 18774191 DOI: 10.1016/J.Tibtech.2008.07.004  1
2008 Jäderlund L, Arthurson V, Granhall U, Jansson JK. Specific interactions between arbuscular mycorrhizal fungi and plant growth-promoting bacteria: as revealed by different combinations. Fems Microbiology Letters. 287: 174-80. PMID 18754788 DOI: 10.1111/J.1574-6968.2008.01318.X  0.01
2008 Edlund A, Jansson JK. Use of bromodeoxyuridine immunocapture to identify psychrotolerant phenanthrene-degrading bacteria in phenanthrene-enriched polluted Baltic Sea sediments. Fems Microbiology Ecology. 65: 513-25. PMID 18616589 DOI: 10.1111/J.1574-6941.2008.00513.X  1
2008 Edlund A, Hårdeman F, Jansson JK, Sjöling S. Active bacterial community structure along vertical redox gradients in Baltic Sea sediment. Environmental Microbiology. 10: 2051-63. PMID 18452546 DOI: 10.1111/J.1462-2920.2008.01624.X  1
2008 Dicksved J, Halfvarson J, Rosenquist M, Järnerot G, Tysk C, Apajalahti J, Engstrand L, Jansson JK. Molecular analysis of the gut microbiota of identical twins with Crohn's disease. The Isme Journal. 2: 716-27. PMID 18401439 DOI: 10.1038/Ismej.2008.37  1
2008 Jäderlund L, Hellman M, Sundh I, Bailey MJ, Jansson JK. Use of a novel nonantibiotic triple marker gene cassette to monitor high survival of Pseudomonas fluorescens SBW25 on winter wheat in the field. Fems Microbiology Ecology. 63: 156-68. PMID 18093144 DOI: 10.1111/J.1574-6941.2007.00420.X  1
2008 Bjerketorp J, Ng Tze Chiang A, Hjort K, Rosenquist M, Liu WT, Jansson JK. Rapid lab-on-a-chip profiling of human gut bacteria. Journal of Microbiological Methods. 72: 82-90. PMID 18055047 DOI: 10.1016/J.Mimet.2007.10.011  1
2008 Unell M, Nordin K, Jernberg C, Stenström J, Jansson JK. Degradation of mixtures of phenolic compounds by Arthrobacter chlorophenolicus A6. Biodegradation. 19: 495-505. PMID 17917705 DOI: 10.1007/S10532-007-9154-2  1
2008 Halfvarson J, Dicksved J, Rosenquist M, Järnerot G, Tysk C, Engstrand L, Jansson JK. W1182 Molecular Fingerprinting of the Gut Microbiota of Twins Reveals Differences According to Crohn's Disease Gastroenterology. 134. DOI: 10.1016/S0016-5085(08)63034-6  1
2007 Jernberg C, Löfmark S, Edlund C, Jansson JK. Long-term ecological impacts of antibiotic administration on the human intestinal microbiota Isme Journal. 1: 56-66. PMID 18043614 DOI: 10.1038/Ismej.2007.3  1
2007 Steger K, Sjögren AM, Jarvis A, Jansson JK, Sundh I. Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste. Journal of Applied Microbiology. 103: 487-98. PMID 17650210 DOI: 10.1111/J.1365-2672.2006.03271.X  0.01
2007 Dicksved J, Flöistrup H, Bergström A, Rosenquist M, Pershagen G, Scheynius A, Roos S, Alm JS, Engstrand L, Braun-Fahrländer C, von Mutius E, Jansson JK. Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles. Applied and Environmental Microbiology. 73: 2284-9. PMID 17293501 DOI: 10.1128/Aem.02223-06  1
2007 Unell M, Kabelitz N, Jansson JK, Heipieper HJ. Adaptation of the psychrotroph Arthrobacter chlorophenolicus A6 to growth temperature and the presence of phenols by changes in the anteiso/iso ratio of branched fatty acids. Fems Microbiology Letters. 266: 138-43. PMID 17233723 DOI: 10.1111/J.1574-6968.2006.00502.X  0.01
2007 Hjort K, Lembke A, Speksnijder A, Smalla K, Jansson JK. Community structure of actively growing bacterial populations in plant pathogen suppressive soil. Microbial Ecology. 53: 399-413. PMID 16944345 DOI: 10.1007/S00248-006-9120-2  1
2006 Löfmark S, Jernberg C, Jansson JK, Edlund C. Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes Journal of Antimicrobial Chemotherapy. 58: 1160-1167. PMID 17046967 DOI: 10.1093/Jac/Dkl420  1
2006 Edlund A, Jansson JK. Changes in active bacterial communities before and after dredging of highly polluted Baltic Sea sediments. Applied and Environmental Microbiology. 72: 6800-7. PMID 16950911 DOI: 10.1128/Aem.00971-06  1
2006 Toljander JF, Artursson V, Paul LR, Jansson JK, Finlay RD. Attachment of different soil bacteria to arbuscular mycorrhizal fungal extraradical hyphae is determined by hyphal vitality and fungal species. Fems Microbiology Letters. 254: 34-40. PMID 16451176 DOI: 10.1111/J.1574-6968.2005.00003.X  1
2006 Edlund A, Soule T, Sjöling S, Jansson JK. Microbial community structure in polluted Baltic Sea sediments. Environmental Microbiology. 8: 223-32. PMID 16423011 DOI: 10.1111/J.1462-2920.2005.00887.X  1
2006 Bjerketorp J, Håkansson S, Belkin S, Jansson JK. Advances in preservation methods: keeping biosensor microorganisms alive and active. Current Opinion in Biotechnology. 17: 43-9. PMID 16368231 DOI: 10.1016/J.Copbio.2005.12.005  0.01
2006 Artursson V, Finlay RD, Jansson JK. Interactions between arbuscular mycorrhizal fungi and bacteria and their potential for stimulating plant growth. Environmental Microbiology. 8: 1-10. PMID 16343316 DOI: 10.1111/J.1462-2920.2005.00942.X  1
2006 Brostedt E, Lindblad A, Jansson J, Nordlund S. Electron transport to nitrogenase in Rhodospirillum rubrum: the role of NAD(P)H as electron donor and the effect of fluoroacetate on nitrogenase activity Fems Microbiology Letters. 150: 263-267. DOI: 10.1111/J.1574-6968.1997.Tb10379.X  0.01
2005 Artursson V, Finlay RD, Jansson JK. Combined bromodeoxyuridine immunocapture and terminal-restriction fragment length polymorphism analysis highlights differences in the active soil bacterial metagenome due to Glomus mosseae inoculation or plant species. Environmental Microbiology. 7: 1952-66. PMID 16309393 DOI: 10.1111/J.1462-2920.2005.00868.X  1
2005 Nordin K, Unell M, Jansson JK. Novel 4-chlorophenol degradation gene cluster and degradation route via hydroxyquinol in Arthrobacter chlorophenolicus A6. Applied and Environmental Microbiology. 71: 6538-44. PMID 16269679 DOI: 10.1128/Aem.71.11.6538-6544.2005  0.01
2005 Jernberg C, Sullivan Å, Edlund C, Jansson JK. Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism Applied and Environmental Microbiology. 71: 501-506. PMID 15640226 DOI: 10.1128/Aem.71.1.501-506.2005  1
2005 Weid Ivd, Artursson V, Seldin L, Jansson JK. Antifungal and root surface colonization properties of GFP-tagged Paenibacillus brasilensis PB177 World Journal of Microbiology & Biotechnology. 21: 1591-1597. DOI: 10.1007/S11274-005-8123-3  1
2004 Maraha N, Backman A, Jansson JK. Monitoring physiological status of GFP-tagged Pseudomonas fluorescens SBW25 under different nutrient conditions and in soil by flow cytometry. Fems Microbiology Ecology. 51: 123-32. PMID 16329861 DOI: 10.1016/J.Femsec.2004.07.007  1
2004 Backman A, Jansson JK. Degradation of 4-chlorophenol at low temperature and during extreme temperature fluctuations by Arthrobacter chlorophenolicus A6. Microbial Ecology. 48: 246-53. PMID 15546043 DOI: 10.1007/S00248-003-2026-3  0.01
2004 Lu Z, Tombolini R, Woo S, Zeilinger S, Lorito M, Jansson JK. In vivo study of trichoderma-pathogen-plant interactions, using constitutive and inducible green fluorescent protein reporter systems. Applied and Environmental Microbiology. 70: 3073-81. PMID 15128569 DOI: 10.1128/Aem.70.5.3073-3081.2004  0.01
2004 Backman A, Maraha N, Jansson JK. Impact of temperature on the physiological status of a potential bioremediation inoculant, Arthrobacter chlorophenolicus A6. Applied and Environmental Microbiology. 70: 2952-8. PMID 15128556 DOI: 10.1128/Aem.70.5.2952-2958.2004  1
2003 Artursson V, Jansson JK. Use of bromodeoxyuridine immunocapture to identify active bacteria associated with arbuscular mycorrhizal hyphae. Applied and Environmental Microbiology. 69: 6208-15. PMID 14532082 DOI: 10.1128/Aem.69.10.6208-6215.2003  1
2003 Jansson JK. Marker and reporter genes: illuminating tools for environmental microbiologists. Current Opinion in Microbiology. 6: 310-6. PMID 12831909 DOI: 10.1016/S1369-5274(03)00057-2  0.01
2003 Jansson JK. Erratum to: Marker and reporter genes: illuminating tools for environmental microbiologists: [Curr. Opin. Microbiol. 6 (2003) 310] Current Opinion in Microbiology. 6: 528-529. DOI: 10.1016/J.Mib.2003.09.011  0.01
2002 Jernberg C, Jansson JK. Impact of 4-chlorophenol contamination and/or inoculation with the 4-chlorophenol-degrading strain, Arthrobacter chlorophenolicus A6L, on soil bacterial community structure. Fems Microbiology Ecology. 42: 387-97. PMID 19709298 DOI: 10.1111/J.1574-6941.2002.Tb01028.X  1
2001 Unge A, Jansson J. Monitoring population size, activity, and distribution of gfp-luxAB-tagged Pseudomonas fluorescens SBW25 during colonization of wheat Microbial Ecology. 41: 290-300. PMID 12032602 DOI: 10.1007/S002480000047  1
2001 Wellington EM, Jansson JK. Preface. Microbial Ecology. 41: 289. PMID 12032601 DOI: 10.1007/s002480000113  0.01
2001 Elväng AM, Westerberg K, Jernberg C, Jansson JK. Use of green fluorescent protein and luciferase biomarkers to monitor survival and activity of Arthrobacter chlorophenolicus A6 cells during degradation of 4-chlorophenol in soil. Environmental Microbiology. 3: 32-42. PMID 11225721 DOI: 10.1046/J.1462-2920.2001.00156.X  1
2001 Räsänen LA, Elväng AM, Jansson J, Lindström K. Effect of heat stress on cell activity and cell morphology of the tropical rhizobium, Sinorhizobium arboris Fems Microbiology Ecology. 34: 267-278. DOI: 10.1111/J.1574-6941.2001.Tb00777.X  0.01
2000 Jansson JK, Björklöf K, Elvang AM, Jørgensen KS. Biomarkers for monitoring efficacy of bioremediation by microbial inoculants. Environmental Pollution (Barking, Essex : 1987). 107: 217-23. PMID 15092998 DOI: 10.1016/S0269-7491(99)00140-2  0.01
2000 Westerberg K, Elväng AM, Stackebrandt E, Jansson JK. Arthrobacter chlorophenolicus sp. nov., a new species capable of degrading high concentrations of 4-chlorophenol. International Journal of Systematic and Evolutionary Microbiology. 50: 2083-92. PMID 11155983 DOI: 10.1099/00207713-50-6-2083  0.01
2000 Lowder M, Unge A, Maraha N, Jansson JK, Swiggett J, Oliver JD. Effect of starvation and the viable-but-nonculturable state on green fluorescent protein (GFP) fluorescence in GFP-tagged Pseudomonas fluorescens A506 Applied and Environmental Microbiology. 66: 3160-3165. PMID 10919764 DOI: 10.1128/Aem.66.8.3160-3165.2000  1
1999 Tombolini R, van der Gaag DJ, Gerhardson B, Jansson JK. Colonization pattern of the biocontrol strain Pseudomonas chlororaphis MA 342 on barley seeds visualized by using green fluorescent protein. Applied and Environmental Microbiology. 65: 3674-80. PMID 10427065 DOI: 10.1128/Aem.65.8.3674-3680.1999  0.01
1999 Unge A, Tombolini R, Molbak L, Jansson JK. Simultaneous monitoring of cell number and metabolic activity of specific bacterial populations with a dual gfp-luxAB marker system. Applied and Environmental Microbiology. 65: 813-21. PMID 9925621 DOI: 10.1128/Aem.65.2.813-821.1999  1
1998 Tombolini R, Jansson JK. Monitoring of GFP-tagged bacterial cells. Methods in Molecular Biology (Clifton, N.J.). 102: 285-98. PMID 9680628 DOI: 10.1385/0-89603-520-4:285  0.01
1998 Möller A, Jansson JK. Detection of firefly luciferase-tagged bacteria in environmental samples. Methods in Molecular Biology (Clifton, N.J.). 102: 269-83. PMID 9680627 DOI: 10.1385/0-89603-520-4:269  0.01
1997 Jansson JK, Prosser JI. Quantification of the presence and activity of specific microorganisms in nature. Molecular Biotechnology. 7: 103-20. PMID 9219225 DOI: 10.1007/Bf02761746  0.01
1997 Möller A, Jansson JK. Quantification of genetically tagged cyanobacteria in Baltic Sea sediment by competitive PCR. Biotechniques. 22: 512-8. PMID 9067031 DOI: 10.2144/97223Rr02  0.01
1997 Tombolini R, Unge A, Davey ME, Bruijn FJd, Jansson JK. Flow cytometric and microscopic analysis of GFP-tagged Pseudomonas fluorescens bacteria Fems Microbiology Ecology. 22: 17-28. DOI: 10.1111/J.1574-6941.1997.Tb00352.X  1
1997 Brostedt E, Lindblad A, Jansson J, Nordlund S. Electron transport to nitrogenase in : the role of NAD(P)H as electron donor and the effect of fluoroacetate on nitrogenase activity Fems Microbiology Letters. 150: 263-267. DOI: 10.1016/S0378-1097(97)00127-4  0.01
1996 Lindblad A, Jansson J, Brostedt E, Johansson M, Hellman U, Nordlund S. Identification and sequence of a nifJ-like gene in Rhodospirillum rubrum: partial characterization of a mutant unaffected in nitrogen fixation. Molecular Microbiology. 20: 559-568. PMID 8736535 DOI: 10.1046/J.1365-2958.1996.5311054.X  0.01
1995 Jansson JK. Tracking genetically engineered microorganisms in nature. Current Opinion in Biotechnology. 6: 275-83. PMID 7780181 DOI: 10.1016/0958-1669(95)80048-4  0.01
1995 Möller A, Norrby A, Gustafsson K, Jansson J. Luminometry and PCR-based monitoring of gene-tagged cyanobacteria in Baltic Sea microcosms Fems Microbiology Letters. 129: 43-49. DOI: 10.1111/J.1574-6968.1995.Tb07555.X  0.01
1994 Möller A, Gustafsson K, Jansson JK. Specific monitoring by PCR amplification and bioluminescence of firefly luciferase gene-tagged bacteria added to environmental samples Fems Microbiology Ecology. 15: 193-206. DOI: 10.1111/J.1574-6941.1994.Tb00243.X  0.01
1989 Jansson JK, Holben WE, Tiedje JM. Detection in soil of a deletion in an engineered DNA sequence by using DNA probes. Applied and Environmental Microbiology. 55: 3022-5. PMID 2624468 DOI: 10.1128/Aem.55.11.3022-3025.1989  1
1988 Holben WE, Jansson JK, Chelm BK, Tiedje JM. DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Applied and Environmental Microbiology. 54: 703-711. PMID 16347582 DOI: 10.1128/Aem.54.3.703-711.1988  1
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