Janet K. Jansson - Publications

Affiliations: 
2014- EBSD Pacific Northwest National Laboratory, USA 
Area:
Microbial Ecology

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Jansson JK, et al. Consent insufficient for data release-Response. Science (New York, N.Y.). 364: 446. PMID 31048484 DOI: 10.1126/Science.Aax7509  0.4
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Jansson JK, et al. Toward unrestricted use of public genomic data. Science (New York, N.Y.). 363: 350-352. PMID 30679363 DOI: 10.1126/Science.Aaw1280  0.4
2018 Vital M, Howe A, Bergeron N, Krauss RM, Jansson JK, Tiedje JM. Metagenomic insights into resistant starch degradation by human gut microbiota. Applied and Environmental Microbiology. PMID 30266729 DOI: 10.1128/Aem.01562-18  0.4
2018 Mackelprang R, Grube AM, Lamendella R, Jesus EDC, Copeland A, Liang C, Jackson RD, Rice CW, Kapucija S, Parsa B, Tringe SG, Tiedje JM, Jansson JK. Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States. Frontiers in Microbiology. 9: 1775. PMID 30158906 DOI: 10.3389/Fmicb.2018.01775  0.4
2018 Taş N, Prestat E, Wang S, Wu Y, Ulrich C, Kneafsey T, Tringe SG, Torn MS, Hubbard SS, Jansson JK. Landscape topography structures the soil microbiome in arctic polygonal tundra. Nature Communications. 9: 777. PMID 29472560 DOI: 10.1038/S41467-018-03089-Z  0.4
2017 Men Y, Yu K, Bælum J, Gao Y, Tremblay J, Prestat E, Stenuit B, Tringe SG, Jansson J, Zhang T, Alvarez-Cohen L. Metagenomic and metatranscriptomic analyses reveal structure and dynamics of a dechlorinating community containing Dehalococcoides mccartyi and corrinoid-providing microorganisms under cobalamin-limited condition. Applied and Environmental Microbiology. PMID 28188205 DOI: 10.1128/Aem.03508-16  0.4
2016 Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature. 535: 94-103. PMID 27383984 DOI: 10.1038/Nature18850  0.4
2016 Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, et al. Back to the Future of Soil Metagenomics. Frontiers in Microbiology. 7: 73. PMID 26903960 DOI: 10.3389/Fmicb.2016.00073  0.4
2014 Prestat E, David MM, Hultman J, Ta? N, Lamendella R, Dvornik J, Mackelprang R, Myrold DD, Jumpponen A, Tringe SG, Holman E, Mavromatis K, Jansson JK. FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Research. 42: e145. PMID 25260589 DOI: 10.1093/Nar/Gku702  0.4
2014 Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, ... ... Jansson JK, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920  0.4
2014 Lamendella R, Strutt S, Borglin S, Chakraborty R, Tas N, Mason OU, Hultman J, Prestat E, Hazen TC, Jansson JK. Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities. Frontiers in Microbiology. 5: 130. PMID 24772107 DOI: 10.3389/Fmicb.2014.00130  0.4
2014 Scott NM, Hess M, Bouskill NJ, Mason OU, Jansson JK, Gilbert JA. The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments. Frontiers in Microbiology. 5: 108. PMID 24723913 DOI: 10.3389/Fmicb.2014.00108  0.4
2014 TaÅŸ N, Prestat E, McFarland JW, Wickland KP, Knight R, Berhe AA, Jorgenson T, Waldrop MP, Jansson JK. Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest. The Isme Journal. 8: 1904-19. PMID 24722629 DOI: 10.1038/Ismej.2014.36  0.4
2014 Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Tackling soil diversity with the assembly of large, complex metagenomes. Proceedings of the National Academy of Sciences of the United States of America. 111: 4904-9. PMID 24632729 DOI: 10.1073/Pnas.1402564111  0.4
2014 Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J, Drummond A, Faith DP, Geller J, Gilbert J, Glöckner FO, Hirsch PR, Leong JA, Meyer C, Obst M, Planes S, ... ... Jansson J, et al. The founding charter of the Genomic Observatories Network. Gigascience. 3: 2. PMID 24606731 DOI: 10.1186/2047-217X-3-2  0.4
2014 David MM, Cecillon S, Warne BM, Prestat E, Jansson JK, Vogel TM. Microbial ecology of chlorinated solvent biodegradation. Environmental Microbiology. PMID 24517489 DOI: 10.1111/1462-2920.12413  0.4
2014 Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, ... ... Jansson JK, et al. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. The Isme Journal. 8: 1464-75. PMID 24451203 DOI: 10.1038/Ismej.2013.254  0.4
2014 Myrold DD, Zeglin LH, Jansson JK. The potential of metagenomic approaches for understanding soil microbial processes Soil Science Society of America Journal. 78: 3-10. DOI: 10.2136/Sssaj2013.07.0287Dgs  0.4
2014 Ravel J, Blaser MJ, Braun J, Brown E, Bushman FD, Chang EB, Davies J, Dewey KG, Dinan T, Dominguez-Bello M, Erdman SE, Finlay BB, Garrett WS, Huffnagle GB, Huttenhower C, ... Jansson J, et al. Human microbiome science: Vision for the future, Bethesda, MD, July 24 to 26, 2013 Microbiome. 2. DOI: 10.1186/2049-2618-2-16  0.4
2014 Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Tackling soil diversity with the assembly of large, complex metagenomes (Proceedings of the National Academy of Sciences of the United States of America (2014) 111, 13, (4904-4909) doi:10.1073/pnas.1402564111) Proceedings of the National Academy of Sciences of the United States of America. 111: 6115. DOI: 10.1073/Pnas.1405719111  0.4
2013 Nicora CD, Anderson BJ, Callister SJ, Norbeck AD, Purvine SO, Jansson JK, Mason OU, David MM, Jurelevicius D, Smith RD, Lipton MS. Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies. Proteomics. 13: 2776-85. PMID 23776032 DOI: 10.1002/Pmic.201300003  0.4
2012 Erickson AR, Cantarel BL, Lamendella R, Darzi Y, Mongodin EF, Pan C, Shah M, Halfvarson J, Tysk C, Henrissat B, Raes J, Verberkmoes NC, Fraser CM, Hettich RL, Jansson JK. Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. Plos One. 7: e49138. PMID 23209564 DOI: 10.1371/Journal.Pone.0049138  0.4
2012 Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman HY, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, ... ... Jansson JK, et al. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. The Isme Journal. 6: 1715-27. PMID 22717885 DOI: 10.1038/Ismej.2012.59  0.4
2012 Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA. Unlocking the potential of metagenomics through replicated experimental design. Nature Biotechnology. 30: 513-20. PMID 22678395 DOI: 10.1038/Nbt.2235  0.4
2012 Lamendella R, VerBerkmoes N, Jansson JK. 'Omics' of the mammalian gut--new insights into function. Current Opinion in Biotechnology. 23: 491-500. PMID 22626866 DOI: 10.1016/J.Copbio.2012.01.016  0.4
2012 Baelum J, Borglin S, Chakraborty R, Fortney JL, Lamendella R, Mason OU, Auer M, Zemla M, Bill M, Conrad ME, Malfatti SA, Tringe SG, Holman HY, Hazen TC, Jansson JK. Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environmental Microbiology. 14: 2405-16. PMID 22616650 DOI: 10.1111/J.1462-2920.2012.02780.X  0.4
2012 Graham DE, Wallenstein MD, Vishnivetskaya TA, Waldrop MP, Phelps TJ, Pfiffner SM, Onstott TC, Whyte LG, Rivkina EM, Gilichinsky DA, Elias DA, Mackelprang R, VerBerkmoes NC, Hettich RL, Wagner D, ... ... Jansson JK, et al. Microbes in thawing permafrost: the unknown variable in the climate change equation. The Isme Journal. 6: 709-12. PMID 22094350 DOI: 10.1038/Ismej.2011.163  0.4
2012 Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, Zhou A, Lee YJ, Mason OU, Dubinsky EA, Chavarria KL, Tom LM, Fortney JL, Lamendella R, Jansson JK, D'haeseleer P, et al. Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume. The Isme Journal. 6: 451-60. PMID 21814288 DOI: 10.1038/Ismej.2011.91  0.4
2011 Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature. 480: 368-71. PMID 22056985 DOI: 10.1038/Nature10576  0.4
2011 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Jansson J, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823  0.4
2011 Gilbert JA, Bailey M, Field D, Fierer N, Fuhrman JA, Hu B, Jansson J, Knight R, Kowalchuk GA, Kyrpides NC, Meyer F, Stevens R. The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011 Standards in Genomic Sciences. 5: 243-247. DOI: 10.4056/Sigs.2134923  0.4
2010 Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Glöckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, et al. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Standards in Genomic Sciences. 3: 249-53. PMID 21304728 DOI: 10.4056/Aigs.1443528  0.4
2010 Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, et al. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Standards in Genomic Sciences. 3: 243-8. PMID 21304727 DOI: 10.4056/Sigs.1433550  0.4
2010 Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (New York, N.Y.). 330: 204-8. PMID 20736401 DOI: 10.1126/Science.1195979  0.4
2010 Jernberg C, Löfmark S, Edlund C, Jansson JK. Long-term impacts of antibiotic exposure on the human intestinal microbiota Microbiology. 156: 3216-3223. PMID 20705661 DOI: 10.1099/Mic.0.040618-0  0.4
2010 Khoruts A, Dicksved J, Jansson JK, Sadowsky MJ. Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea. Journal of Clinical Gastroenterology. 44: 354-60. PMID 20048681 DOI: 10.1097/Mcg.0B013E3181C87E02  0.4
2010 Hjort K, Bergström M, Adesina MF, Jansson JK, Smalla K, Sjöling S. Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil Fems Microbiology Ecology. 71: 197-207. PMID 19922433 DOI: 10.1111/J.1574-6941.2009.00801.X  0.4
2009 Verberkmoes NC, Russell AL, Shah M, Godzik A, Rosenquist M, Halfvarson J, Lefsrud MG, Apajalahti J, Tysk C, Hettich RL, Jansson JK. Shotgun metaproteomics of the human distal gut microbiota. The Isme Journal. 3: 179-89. PMID 18971961 DOI: 10.1038/Ismej.2008.108  0.4
2009 Vogel TM, Simonet P, Hirsch PR, Jansson JK, Tiedje JM, van Elsas JD, Nalin R, Philippot L, Bailey MJ. Advantages of the metagenomic approach for soil exploration: Reply from Vogel et al. Nature Reviews Microbiology. 7: 756-757. DOI: 10.1038/Nrmicro2119-C3  0.4
2009 Vogel TM, Simonet P, Jansson JK, Hirsch PR, Tiedje JM, van Elsas JD, Bailey MJ, Nalin R, Philippot L. TerraGenome: A consortium for the sequencing of a soil metagenome Nature Reviews Microbiology. 7: 252. DOI: 10.1038/Nrmicro2119  0.4
2008 van Elsas JD, Costa R, Jansson J, Sjöling S, Bailey M, Nalin R, Vogel TM, van Overbeek L. The metagenomics of disease-suppressive soils - experiences from the METACONTROL project. Trends in Biotechnology. 26: 591-601. PMID 18774191 DOI: 10.1016/J.Tibtech.2008.07.004  0.4
2007 Jernberg C, Löfmark S, Edlund C, Jansson JK. Long-term ecological impacts of antibiotic administration on the human intestinal microbiota Isme Journal. 1: 56-66. PMID 18043614 DOI: 10.1038/Ismej.2007.3  0.4
2007 Hjort K, Lembke A, Speksnijder A, Smalla K, Jansson JK. Community structure of actively growing bacterial populations in plant pathogen suppressive soil. Microbial Ecology. 53: 399-413. PMID 16944345 DOI: 10.1007/S00248-006-9120-2  0.4
2006 Löfmark S, Jernberg C, Jansson JK, Edlund C. Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes Journal of Antimicrobial Chemotherapy. 58: 1160-1167. PMID 17046967 DOI: 10.1093/Jac/Dkl420  0.4
2006 Toljander JF, Artursson V, Paul LR, Jansson JK, Finlay RD. Attachment of different soil bacteria to arbuscular mycorrhizal fungal extraradical hyphae is determined by hyphal vitality and fungal species. Fems Microbiology Letters. 254: 34-40. PMID 16451176 DOI: 10.1111/J.1574-6968.2005.00003.X  0.4
2006 Edlund A, Soule T, Sjöling S, Jansson JK. Microbial community structure in polluted Baltic Sea sediments. Environmental Microbiology. 8: 223-32. PMID 16423011 DOI: 10.1111/J.1462-2920.2005.00887.X  0.4
2005 Jernberg C, Sullivan Å, Edlund C, Jansson JK. Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism Applied and Environmental Microbiology. 71: 501-506. PMID 15640226 DOI: 10.1128/Aem.71.1.501-506.2005  0.4
2000 Lowder M, Unge A, Maraha N, Jansson JK, Swiggett J, Oliver JD. Effect of starvation and the viable-but-nonculturable state on green fluorescent protein (GFP) fluorescence in GFP-tagged Pseudomonas fluorescens A506 Applied and Environmental Microbiology. 66: 3160-3165. PMID 10919764 DOI: 10.1128/Aem.66.8.3160-3165.2000  0.4
1989 Jansson JK, Holben WE, Tiedje JM. Detection in soil of a deletion in an engineered DNA sequence by using DNA probes. Applied and Environmental Microbiology. 55: 3022-5. PMID 2624468 DOI: 10.1128/Aem.55.11.3022-3025.1989  0.4
1988 Holben WE, Jansson JK, Chelm BK, Tiedje JM. DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Applied and Environmental Microbiology. 54: 703-711. PMID 16347582 DOI: 10.1128/Aem.54.3.703-711.1988  0.4
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