Kathryn Elmer - Publications

2007-2012 University of Konstanz, Konstanz, Germany 

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Jacobs A, Elmer KR. Alternative splicing and gene expression play contrasting roles in the parallel phenotypic evolution of a salmonid fish. Molecular Ecology. PMID 33502030 DOI: 10.1111/mec.15817  0.44
2020 Burgon JD, Vences M, Steinfartz S, Bogaerts S, Bonato L, Donaire-Barroso D, Martínez-Solano I, Velo-Antón G, Vieites DR, Mable BK, Elmer KR. Phylogenomic inference of species and subspecies diversity in the Palearctic salamander genus Salamandra. Molecular Phylogenetics and Evolution. 107063. PMID 33387650 DOI: 10.1016/j.ympev.2020.107063  0.76
2020 Schneider K, White TJ, Mitchell S, Adams CE, Reeve R, Elmer KR. Pitfalls and virtues of population genetic summary statistics: detecting selective sweeps in recent divergences. Journal of Evolutionary Biology. PMID 33185292 DOI: 10.1111/jeb.13738  0.44
2020 Yurchenko AA, Recknagel H, Elmer KR. Chromosome-level assembly of the common lizard (Zootoca vivipara) genome. Genome Biology and Evolution. PMID 32835354 DOI: 10.1093/gbe/evaa161  0.88
2020 Jacobs A, Carruthers M, Yurchenko A, Gordeeva NV, Alekseyev SS, Hooker O, Leong JS, Minkley DR, Rondeau EB, Koop BF, Adams CE, Elmer KR. Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish. Plos Genetics. 16: e1008658. PMID 32302300 DOI: 10.1371/journal.pgen.1008658  0.44
2020 Burgon JD, Vieites DR, Jacobs A, Weidt SK, Gunter HM, Steinfartz S, Burgess K, Mable BK, Elmer KR. Functional colour genes and signals of selection in colour polymorphic salamanders. Molecular Ecology. PMID 32159878 DOI: 10.1111/mec.15411  0.44
2019 Schneider K, Adams CE, Elmer KR. Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids. Bmc Genomics. 20: 1010. PMID 31870285 DOI: 10.1186/s12864-019-6361-2  0.44
2019 McLennan D, Recknagel H, Elmer KR, Monaghan P. Distinct telomere differences within a reproductively bimodal common lizard population. Functional Ecology. 33: 1917-1927. PMID 31762528 DOI: 10.1111/1365-2435.13408  0.88
2019 Recknagel H, Elmer KR. Differential reproductive investment in co-occurring oviparous and viviparous common lizards (Zootoca vivipara) and implications for life-history trade-offs with viviparity. Oecologia. PMID 31062164 DOI: 10.1007/s00442-019-04398-w  0.88
2019 Goudarzi F, Hemami MR, Rancilhac L, Malekian M, Fakheran S, Elmer KR, Steinfartz S. Geographic separation and genetic differentiation of populations are not coupled with niche differentiation in threatened Kaiser's spotted newt (Neurergus kaiseri). Scientific Reports. 9: 6239. PMID 30996234 DOI: 10.1038/s41598-019-41886-8  0.76
2019 Rancilhac L, Goudarzi F, Gehara M, Hemami MR, Elmer KR, Vences M, Steinfarz S. Phylogeny and species delimitation of Near Eastern Neurergus newts (Salamandridae) based on genome-wide RADseq data analysis. Molecular Phylogenetics and Evolution. PMID 30659915 DOI: 10.1016/j.ympev.2019.01.003  0.76
2019 Jacobs A, Carruthers M, Eckmann R, Yohannes E, Adams CE, Behrmann-Godel J, Elmer KR. Rapid niche expansion by selection on functional genomic variation after ecosystem recovery. Nature Ecology & Evolution. 3: 77-86. PMID 30510178 DOI: 10.1038/s41559-018-0742-9  0.44
2018 Dinis M, Merabet K, Martínez-Freiría F, Steinfartz S, Vences M, Burgon JD, Elmer KR, Donaire D, Hinckley A, Fahd S, Joger U, Fawzi A, Slimani T, Velo-Antón G. Allopatric diversification and evolutionary melting pot in a North African Palearctic relict: The biogeographic history of Salamandra algira. Molecular Phylogenetics and Evolution. 130: 81-91. PMID 30321698 DOI: 10.1016/j.ympev.2018.10.018  0.76
2018 Carruthers M, Yurchenko AA, Augley JJ, Adams CE, Herzyk P, Elmer KR. Correction to: De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species. Bmc Genomics. 19: 448. PMID 29890942 DOI: 10.1186/s12864-018-4840-5  0.44
2018 Jacobs A, Hughes MR, Robinson PC, Adams CE, Elmer KR. The Genetic Architecture Underlying the Evolution of a Rare Piscivorous Life History Form in Brown Trout after Secondary Contact and Strong Introgression. Genes. 9. PMID 29857499 DOI: 10.3390/genes9060280  0.44
2018 Recknagel H, Kamenos N, Elmer KR. Common lizards break Dollo's law of irreversibility: Genome-wide phylogenomics support a single origin of viviparity and re-evolution of oviparity. Molecular Phylogenetics and Evolution. PMID 29803948 DOI: 10.1016/j.ympev.2018.05.029  0.88
2018 Jacobs A, De Noia M, Praebel K, Kanstad-Hanssen Ø, Paterno M, Jackson D, McGinnity P, Sturm A, Elmer KR, Llewellyn MS. Genetic fingerprinting of salmon louse (Lepeophtheirus salmonis) populations in the North-East Atlantic using a random forest classification approach. Scientific Reports. 8: 1203. PMID 29352185 DOI: 10.1038/s41598-018-19323-z  0.44
2018 Lehtonen TK, Elmer KR, Lappalainen M, Meyer A. Genetic evidence for panmixia in a colony-breeding crater lake cichlid fish. Scientific Reports. 8: 1166. PMID 29348515 DOI: 10.1038/s41598-018-19266-5  0.88
2018 Carruthers M, Yurchenko AA, Augley JJ, Adams CE, Herzyk P, Elmer KR. De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species. Bmc Genomics. 19: 32. PMID 29310597 DOI: 10.1186/s12864-017-4379-x  0.44
2017 Recknagel H, Hooker OE, Adams CE, Elmer KR. Ecosystem size predicts eco-morphological variability in a postglacial diversification. Ecology and Evolution. 7: 5560-5570. PMID 28811875 DOI: 10.1002/ece3.3013  0.88
2017 Jacobs A, Womack R, Chen M, Gharbi K, Elmer K. Significant Synteny and Co-localization of Ecologically Relevant Quantitative Trait Loci Within and Across Species of Salmonid Fishes. Genetics. PMID 28760747 DOI: 10.1534/genetics.117.300093  0.44
2017 Rodríguez A, Burgon JD, Lyra M, Irisarri I, Baurain D, Blaustein L, Göcmen B, Künzel S, Mable B, Nolte AW, Veith M, Steinfartz S, Elmer KR, Philippe H, Vences M. Inferring the shallow phylogeny of true salamanders (Salamandra) by multiple phylogenomic approaches. Molecular Phylogenetics and Evolution. PMID 28716741 DOI: 10.1016/j.ympev.2017.07.009  0.76
2017 Torres-Dowdall J, Pierotti MER, Härer A, Karagic N, Woltering JM, Henning F, Elmer KR, Meyer A. Rapid and parallel adaptive evolution of the visual system of Neotropical Midas cichlid fishes. Molecular Biology and Evolution. PMID 28444297 DOI: 10.1093/molbev/msx143  0.88
2016 Fruciano C, Franchini P, Kovacova V, Elmer KR, Henning F, Meyer A. Genetic linkage of distinct adaptive traits in sympatrically speciating crater lake cichlid fish. Nature Communications. 7: 12736. PMID 27597183 DOI: 10.1038/ncomms12736  0.88
2015 Kusche H, Elmer KR, Meyer A. Sympatric ecological divergence associated with a color polymorphism. Bmc Biology. 13: 82. PMID 26437665 DOI: 10.1186/s12915-015-0192-7  0.88
2015 Torres-Dowdall J, Henning F, Elmer KR, Meyer A. Ecological and Lineage-Specific Factors Drive the Molecular Evolution of Rhodopsin in Cichlid Fishes. Molecular Biology and Evolution. 32: 2876-82. PMID 26187436 DOI: 10.1093/molbev/msv159  0.88
2015 Recknagel H, Jacobs A, Herzyk P, Elmer KR. Double-digest RAD sequencing using Ion Proton semiconductor platform (ddRADseq-ion) with nonmodel organisms. Molecular Ecology Resources. PMID 25808755 DOI: 10.1111/1755-0998.12406  0.88
2014 Elmer KR, Fan S, Kusche H, Spreitzer ML, Kautt AF, Franchini P, Meyer A. Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes. Nature Communications. 5: 5168. PMID 25346277 DOI: 10.1038/ncomms6168  0.88
2014 Kusche H, Recknagel H, Elmer KR, Meyer A. Crater lake cichlids individually specialize along the benthic-limnetic axis. Ecology and Evolution. 4: 1127-39. PMID 24772288 DOI: 10.1002/ece3.1015  0.88
2014 Recknagel H, Elmer KR, Meyer A. Crater lake habitat predicts morphological diversity in adaptive radiations of cichlid fishes. Evolution; International Journal of Organic Evolution. 68: 2145-55. PMID 24660780 DOI: 10.1111/evo.12412  0.88
2014 Franchini P, Fruciano C, Spreitzer ML, Jones JC, Elmer KR, Henning F, Meyer A. Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes. Molecular Ecology. 23: 1828-45. PMID 24237636 DOI: 10.1111/mec.12590  0.88
2013 Recknagel H, Elmer KR, Noonan BP, Raselimanana AP, Meyer A, Vences M. Multi-gene phylogeny of Madagascar's plated lizards, Zonosaurus and Tracheloptychus (Squamata: Gerrhosauridae). Molecular Phylogenetics and Evolution. 69: 1215-21. PMID 23831454 DOI: 10.1016/j.ympev.2013.06.013  0.88
2013 Elmer KR, Bonett RM, Wake DB, Lougheed SC. Early Miocene origin and cryptic diversification of South American salamanders. Bmc Evolutionary Biology. 13: 59. PMID 23497060 DOI: 10.1186/1471-2148-13-59  0.88
2013 Recknagel H, Elmer KR, Meyer A. A hybrid genetic linkage map of two ecologically and morphologically divergent Midas cichlid fishes (Amphilophus spp.) obtained by massively parallel DNA sequencing (ddRADSeq). G3 (Bethesda, Md.). 3: 65-74. PMID 23316439 DOI: 10.1534/g3.112.003897  0.88
2013 Elmer KR, Lehtonen TK, Fan S, Meyer A. Crater lake colonization by neotropical cichlid fishes. Evolution; International Journal of Organic Evolution. 67: 281-8. PMID 23289578 DOI: 10.1111/j.1558-5646.2012.01755.x  0.88
2013 Manousaki T, Hull PM, Kusche H, Machado-Schiaffino G, Franchini P, Harrod C, Elmer KR, Meyer A. Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua. Molecular Ecology. 22: 650-69. PMID 23057963 DOI: 10.1111/mec.12034  0.88
2012 Kautt AF, Elmer KR, Meyer A. Genomic signatures of divergent selection and speciation patterns in a 'natural experiment', the young parallel radiations of Nicaraguan crater lake cichlid fishes. Molecular Ecology. 21: 4770-86. PMID 22934802 DOI: 10.1111/j.1365-294X.2012.05738.x  0.88
2012 Fan S, Elmer KR, Meyer A. Genomics of adaptation and speciation in cichlid fishes: recent advances and analyses in African and Neotropical lineages. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 385-94. PMID 22201168 DOI: 10.1098/rstb.2011.0247  0.88
2012 Elmer KR, Recknagel H, Thompson A, Meyer A. Asymmetric admixture and morphological variability at a suture zone: Parapatric burbot subspecies (Pisces) in the Mackenzie River basin, Canada Hydrobiologia. 683: 217-229. DOI: 10.1007/s10750-011-0959-y  0.88
2011 Fan S, Elmer KR, Meyer A. Positive Darwinian selection drives the evolution of the morphology-related gene, EPCAM, in particularly species-rich lineages of African cichlid fishes. Journal of Molecular Evolution. 73: 1-9. PMID 21811860 DOI: 10.1007/s00239-011-9452-5  0.88
2011 Elmer KR, Meyer A. Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends in Ecology & Evolution. 26: 298-306. PMID 21459472 DOI: 10.1016/j.tree.2011.02.008  0.88
2011 Angienda PO, Lee HJ, Elmer KR, Abila R, Waindi EN, Meyer A. Genetic structure and gene flow in an endangered native tilapia fish (Oreochromis esculentus) compared to invasive Nile tilapia (Oreochromis niloticus) in Yala swamp, East Africa Conservation Genetics. 12: 243-255. DOI: 10.1007/s10592-010-0136-2  0.88
2010 Elmer KR, Meyer A. Sympatric speciation without borders? Molecular Ecology. 19: 1991-3. PMID 20550632 DOI: 10.1111/j.1365-294X.2010.04612.x  0.88
2010 Elmer KR, Lehtonen TK, Kautt AF, Harrod C, Meyer A. Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times. Bmc Biology. 8: 60. PMID 20459869 DOI: 10.1186/1741-7007-8-60  0.88
2010 Elmer KR, Kusche H, Lehtonen TK, Meyer A. Local variation and parallel evolution: morphological and genetic diversity across a species complex of neotropical crater lake cichlid fishes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1763-82. PMID 20439280 DOI: 10.1098/rstb.2009.0271  0.88
2010 Elmer KR, Fan S, Gunter HM, Jones JC, Boekhoff S, Kuraku S, Meyer A. Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes. Molecular Ecology. 19: 197-211. PMID 20331780 DOI: 10.1111/j.1365-294X.2009.04488.x  0.88
2009 Elmer KR, Reggio C, Wirth T, Verheyen E, Salzburger W, Meyer A. Pleistocene desiccation in East Africa bottlenecked but did not extirpate the adaptive radiation of Lake Victoria haplochromine cichlid fishes. Proceedings of the National Academy of Sciences of the United States of America. 106: 13404-9. PMID 19651614 DOI: 10.1073/pnas.0902299106  0.88
2009 Elmer KR, Lehtonen TK, Meyer A. Color assortative mating contributes to sympatric divergence of neotropical cichlid fish. Evolution; International Journal of Organic Evolution. 63: 2750-7. PMID 19490078 DOI: 10.1111/j.1558-5646.2009.00736.x  0.88
2008 Elmer KR, Cannatella DC. Three new species of leaflitter frogs from the upper Amazon forests: Cryptic diversity within Pristimantis "ockendeni" (Anura: Strabomantidae) in Ecuador Zootaxa. 11-38.  0.88
2007 Elmer KR, Dávila JA, Lougheed SC. Cryptic diversity and deep divergence in an upper Amazonian leaflitter frog, Eleutherodactylus ockendeni. Bmc Evolutionary Biology. 7: 247. PMID 18154647 DOI: 10.1186/1471-2148-7-247  0.88
2007 Elmer KR, Dávila JA, Lougheed SC. Applying new inter-individual approaches to assess fine-scale population genetic diversity in a neotropical frog, Eleutherodactylus ockendeni. Heredity. 99: 506-15. PMID 17700637 DOI: 10.1038/sj.hdy.6801025  0.88
2006 Elmer KR, Dávila JA, Lougheed SC. Isolation of simple and compound polymorphic tetranucleotide microsatellites for the neotropical leaflitter frog Eleutherodactylus ockendeni (Leptodactylidae) Molecular Ecology Notes. 6: 891-893. DOI: 10.1111/j.1471-8286.2006.01389.x  0.88
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