Ingo Braasch - Publications

Affiliations: 
2004-2005 University of Konstanz, Konstanz, Germany 

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Feron R, Pan Q, Wen M, Imarazene B, Jouanno E, Anderson J, Herpin A, Journot L, Parrinello H, Klopp C, Kottler VA, Roco AS, Du K, Kneitz S, Adolfi M, ... ... Braasch I, et al. RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data. Molecular Ecology Resources. PMID 33590960 DOI: 10.1111/1755-0998.13360  1
2020 Du K, Stöck M, Kneitz S, Klopp C, Woltering JM, Adolfi MC, Feron R, Prokopov D, Makunin A, Kichigin I, Schmidt C, Fischer P, Kuhl H, Wuertz S, Gessner J, ... ... Braasch I, et al. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nature Ecology & Evolution. PMID 32231327 DOI: 10.1038/S41559-020-1166-X  1
2019 Ganz J, Melancon E, Wilson C, Amores A, Batzel P, Strader M, Braasch I, Diba P, Kuhlman JA, Postlethwait JH, Eisen JS. Epigenetic factors Dnmt1 and Uhrf1 coordinate intestinal development. Developmental Biology. PMID 31394080 DOI: 10.1016/J.Ydbio.2019.08.002  1
2019 Cal L, Suarez-Bregua P, Braasch I, Irion U, Kelsh R, Cerdá-Reverter JM, Rotllant J. Loss-of-function mutations in the melanocortin-1-receptor (Mc1r) cause disruption of dorso-ventral countershading in teleost fish. Pigment Cell & Melanoma Research. PMID 31251842 DOI: 10.1111/Pcmr.12806  1
2019 Cal L, Suarez-Bregua P, Comesaña P, Owen J, Braasch I, Kelsh R, Cerdá-Reverter JM, Rotllant J. Countershading in zebrafish results from an Asip1 controlled dorsoventral gradient of pigment cell differentiation. Scientific Reports. 9: 3449. PMID 30837630 DOI: 10.1038/S41598-019-40251-Z  1
2018 Spiewak JE, Bain EJ, Liu J, Kou K, Sturiale SL, Patterson LB, Diba P, Eisen JS, Braasch I, Ganz J, Parichy DM. Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes. Plos Genetics. 14: e1007538. PMID 30226839 DOI: 10.1371/Journal.Pgen.1007538  1
2018 Braasch I, Bobe J, Guiguen Y, Postlethwait JH. Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome duplication'. Nature Genetics. PMID 29955179 DOI: 10.1038/S41588-018-0163-3  1
2018 Desvignes T, Carey A, Braasch I, Enright T, Postlethwait JH. Skeletal development in the heterocercal caudal fin of spotted gar (Lepisosteus oculatus) and other Lepisosteiformes. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 29330942 DOI: 10.1002/Dvdy.24617  1
2017 Braasch I, Postlethwait JH. The Spotted Gar: Genomic Journeys into a Lost World. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 328: 593-595. PMID 29059506 DOI: 10.1002/Jez.B.22775  1
2017 Pasquier J, Braasch I, Batzel P, Cabau C, Montfort J, Nguyen T, Jouanno E, Berthelot C, Klopp C, Journot L, Postlethwait JH, Guiguen Y, Bobe J. Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 28944589 DOI: 10.1002/Jez.B.22770  1
2017 Kawasaki K, Mikami M, Nakatomi M, Braasch I, Batzel P, H Postlethwait J, Sato A, Sasagawa I, Ishiyama M. SCPP Genes and Their Relatives in Gar: Rapid Expansion of Mineralization Genes in Osteichthyans. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 28643450 DOI: 10.1002/Jez.B.22755  1
2017 Cal L, Suarez-Bregua P, Cerdá-Reverter JM, Braasch I, Rotllant J. Fish pigmentation and the melanocortin system. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 211: 26-33. PMID 28599948 DOI: 10.1016/J.Cbpa.2017.06.001  1
2017 Cal L, MegÍas M, Cerdá-Reverter JM, Postlethwait JH, Braasch I, Rotllant J. BAC Recombineering of the Agouti Loci from Spotted Gar and Zebrafish Reveals the Evolutionary Ancestry of Dorsal-Ventral Pigment Asymmetry in Fish. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 28544213 DOI: 10.1002/Jez.B.22748  1
2017 Suarez-Bregua P, Torres-Nuñez E, Saxena A, Guerreiro P, Braasch I, Prober DA, Moran P, Cerda-Reverter JM, Du SJ, Adrio F, Power DM, Canario AV, Postlethwait JH, Bronner ME, Cañestro C, et al. Pth4, an ancient parathyroid hormone lost in eutherian mammals, reveals a new brain-to-bone signaling pathway. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 31: 569-583. PMID 28148780 DOI: 10.1096/Fj.201600815R  1
2016 Sukeena JM, Galicia CA, Wilson JD, McGinn T, Boughman JW, Robison BD, Postlethwait JH, Braasch I, Stenkamp DL, Fuerst PG. Characterization and Evolution of the Spotted Gar Retina. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 27862951 DOI: 10.1002/Jez.B.22710  1
2016 Askary A, Smeeton J, Paul S, Schindler S, Braasch I, Ellis NA, Postlethwait J, Miller CT, Crump JG. Ancient origin of lubricated joints in bony vertebrates. Elife. 5. PMID 27434666 DOI: 10.7554/Elife.16415  1
2016 Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, et al. Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48: 700. PMID 27230688 DOI: 10.1038/Ng0616-700C  1
2016 Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Bmc Genomics. 17: 368. PMID 27189481 DOI: 10.1186/S12864-016-2709-Z  1
2016 Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, et al. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48: 427-37. PMID 26950095 DOI: 10.1038/Ng.3526  1
2016 Askary A, Smeeton J, Paul S, Schindler S, Braasch I, Ellis NA, Postlethwait J, Miller CT, Crump JG. Author response: Ancient origin of lubricated joints in bony vertebrates Elife. DOI: 10.7554/Elife.16415.016  1
2015 Gehrke AR, Schneider I, de la Calle-Mustienes E, Tena JJ, Gomez-Marin C, Chandran M, Nakamura T, Braasch I, Postlethwait JH, Gómez-Skarmeta JL, Shubin NH. Deep conservation of wrist and digit enhancers in fish. Proceedings of the National Academy of Sciences of the United States of America. 112: 803-8. PMID 25535365 DOI: 10.1073/Pnas.1420208112  1
2015 Braasch I, Peterson SM, Desvignes T, McCluskey BM, Batzel P, Postlethwait JH. A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 324: 316-41. PMID 25111899 DOI: 10.1002/Jez.B.22589  1
2014 Ganz J, Kroehne V, Freudenreich D, Machate A, Geffarth M, Braasch I, Kaslin J, Brand M. Subdivisions of the adult zebrafish pallium based on molecular marker analysis. F1000research. 3: 308. PMID 25713698 DOI: 10.12688/F1000Research.5595.1  1
2014 Santos ME, Braasch I, Boileau N, Meyer BS, Sauteur L, Böhne A, Belting HG, Affolter M, Salzburger W. The evolution of cichlid fish egg-spots is linked with a cis-regulatory change. Nature Communications. 5: 5149. PMID 25296686 DOI: 10.1038/Ncomms6149  1
2014 Braasch I, Schartl M. Evolution of endothelin receptors in vertebrates. General and Comparative Endocrinology. 209: 21-34. PMID 25010382 DOI: 10.1016/J.Ygcen.2014.06.028  1
2014 Braasch I, Guiguen Y, Loker R, Letaw JH, Ferrara A, Bobe J, Postlethwait JH. Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods. Comparative Biochemistry and Physiology. Toxicology & Pharmacology : Cbp. 163: 24-36. PMID 24486528 DOI: 10.1016/J.Cbpc.2014.01.005  1
2013 Meng F, Braasch I, Phillips JB, Lin X, Titus T, Zhang C, Postlethwait JH. Evolution of the eye transcriptome under constant darkness in Sinocyclocheilus cavefish. Molecular Biology and Evolution. 30: 1527-43. PMID 23612715 DOI: 10.1093/Molbev/Mst079  1
2013 Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, et al. The African coelacanth genome provides insights into tetrapod evolution. Nature. 496: 311-6. PMID 23598338 DOI: 10.1038/Nature12027  1
2013 Schartl M, Walter RB, Shen Y, Garcia T, Catchen J, Amores A, Braasch I, Chalopin D, Volff JN, Lesch KP, Bisazza A, Minx P, Hillier L, Wilson RK, Fuerstenberg S, et al. The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits. Nature Genetics. 45: 567-72. PMID 23542700 DOI: 10.1038/Ng.2604  1
2013 Meng F, Braasch I, Phillips JB, Lin X, Titus T, Zhang C, Postlethwait JH. Erratum: Evolution of the eye transcriptome under constant darkness in sinocyclocheilus cavefish (Molecular Biology and Evolution (2013) 30:7 (1527-1543) DOI:10.1093/molbev/mst079) Molecular Biology and Evolution. 30: 2367-2367. DOI: 10.1093/Molbev/Mst146  1
2012 Anderson JL, Rodríguez Marí A, Braasch I, Amores A, Hohenlohe P, Batzel P, Postlethwait JH. Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics. Plos One. 7: e40701. PMID 22792396 DOI: 10.1371/Journal.Pone.0040701  1
2012 DeLaurier A, Nakamura Y, Braasch I, Khanna V, Kato H, Wakitani S, Postlethwait JH, Kimmel CB. Histone deacetylase-4 is required during early cranial neural crest development for generation of the zebrafish palatal skeleton. Bmc Developmental Biology. 12: 16. PMID 22676467 DOI: 10.1186/1471-213X-12-16  1
2011 Catchen JM, Braasch I, Postlethwait JH. Conserved synteny and the zebrafish genome. Methods in Cell Biology. 104: 259-85. PMID 21924168 DOI: 10.1016/B978-0-12-374814-0.00015-X  1
2011 McFarlane L, Svingen T, Braasch I, Koopman P, Schartl M, Wilhelm D. Expansion of the Ago gene family in the teleost clade. Development Genes and Evolution. 221: 95-104. PMID 21556854 DOI: 10.1007/S00427-011-0363-7  1
2011 Braasch I, Postlethwait JH. The teleost agouti-related protein 2 gene is an ohnolog gone missing from the tetrapod genome. Proceedings of the National Academy of Sciences of the United States of America. 108: E47-8. PMID 21406593 DOI: 10.1073/Pnas.1101594108  1
2010 Zhou Q, Braasch I, Froschauer A, Böhne A, Schultheis C, Schartl M, Volff JN. A novel marker for the platyfish (Xiphophorus maculatus) W chromosome is derived from a Polinton transposon. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 37: 181-8. PMID 20347827 DOI: 10.1016/S1673-8527(09)60036-9  1
2010 Herpin A, Braasch I, Kraeussling M, Schmidt C, Thoma EC, Nakamura S, Tanaka M, Schartl M. Transcriptional rewiring of the sex determining dmrt1 gene duplicate by transposable elements. Plos Genetics. 6: e1000844. PMID 20169179 DOI: 10.1371/Journal.Pgen.1000844  1
2010 Laisney JA, Braasch I, Walter RB, Meierjohann S, Schartl M. Lineage-specific co-evolution of the Egf receptor/ligand signaling system. Bmc Evolutionary Biology. 10: 27. PMID 20105326 DOI: 10.1186/1471-2148-10-27  1
2009 Braasch I, Brunet F, Volff JN, Schartl M. Pigmentation pathway evolution after whole-genome duplication in fish. Genome Biology and Evolution. 1: 479-93. PMID 20333216 DOI: 10.1093/Gbe/Evp050  1
2009 Braasch I, Liedtke D, Volff JN, Schartl M. Pigmentary function and evolution of tyrp1 gene duplicates in fish. Pigment Cell & Melanoma Research. 22: 839-50. PMID 19659755 DOI: 10.1111/J.1755-148X.2009.00614.X  1
2009 Salzburger W, Steinke D, Braasch I, Meyer A. Genome desertification in eutherians: can gene deserts explain the uneven distribution of genes in placental mammalian genomes? Journal of Molecular Evolution. 69: 207-16. PMID 19568804 DOI: 10.1007/S00239-009-9251-4  1
2009 Braasch I, Salzburger W. In ovo omnia: diversification by duplication in fish and other vertebrates. Journal of Biology. 8: 25. PMID 19291270 DOI: 10.1186/Jbiol121  1
2009 Braasch I, Volff JN, Schartl M. The endothelin system: evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication. Molecular Biology and Evolution. 26: 783-99. PMID 19174480 DOI: 10.1093/Molbev/Msp015  1
2009 Klüver N, Herpin A, Braasch I, Driessle J, Schartl M. Regulatory back-up circuit of medaka Wt1 co-orthologs ensures PGC maintenance. Developmental Biology. 325: 179-88. PMID 18992736 DOI: 10.1016/J.Ydbio.2008.10.009  1
2008 Salzburger W, Renn SC, Steinke D, Braasch I, Hofmann HA, Meyer A. Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs. Bmc Genomics. 9: 96. PMID 18298844 DOI: 10.1186/1471-2164-9-96  1
2007 Salzburger W, Braasch I, Meyer A. Adaptive sequence evolution in a color gene involved in the formation of the characteristic egg-dummies of male haplochromine cichlid fishes. Bmc Biology. 5: 51. PMID 18005399 DOI: 10.1186/1741-7007-5-51  1
2007 Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A. Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications. Bmc Genomics. 8: 312. PMID 17822543 DOI: 10.1186/1471-2164-8-312  1
2007 Selz Y, Braasch I, Hoffmann C, Schmidt C, Schultheis C, Schartl M, Volff JN. Evolution of melanocortin receptors in teleost fish: the melanocortin type 1 receptor. Gene. 401: 114-22. PMID 17707598 DOI: 10.1016/J.Gene.2007.07.005  1
2007 Braasch I, Schartl M, Volff JN. Evolution of pigment synthesis pathways by gene and genome duplication in fish. Bmc Evolutionary Biology. 7: 74. PMID 17498288 DOI: 10.1186/1471-2148-7-74  1
2006 Schultheis C, Zhou Q, Froschauer A, Nanda I, Selz Y, Schmidt C, Matschl S, Wenning M, Veith AM, Naciri M, Hanel R, Braasch I, Dettai A, Böhne A, Ozouf-Costaz C, et al. Molecular analysis of the sex-determining region of the platyfish Xiphophorus maculatus. Zebrafish. 3: 299-309. PMID 18377211 DOI: 10.1089/Zeb.2006.3.299  1
2006 Braasch I, Salzburger W, Meyer A. Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration. Molecular Biology and Evolution. 23: 1192-202. PMID 16547150 DOI: 10.1093/Molbev/Msk003  1
2006 Steinke D, Salzburger W, Braasch I, Meyer A. Many genes in fish have species-specific asymmetric rates of molecular evolution. Bmc Genomics. 7: 20. PMID 16466575 DOI: 10.1186/1471-2164-7-20  1
2006 Lang M, Miyake T, Braasch I, Tinnemore D, Siegel N, Salzburger W, Amemiya CT, Meyer A. A BAC library of the East African haplochromine cichlid fish Astatotilapia burtoni. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 306: 35-44. PMID 16254984 DOI: 10.1002/Jez.B.21068  1
2006 Froschauer A, Braasch I, Volff JN. Fish Genomes, Comparative Genomics and Vertebrate Evolution Current Genomics. 7: 43-57. DOI: 10.2174/138920206776389766  1
2003 Taylor JS, Braasch I, Frickey T, Meyer A, Van de Peer Y. Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Research. 13: 382-90. PMID 12618368 DOI: 10.1101/Gr.640303  1
2001 Van de Peer Y, Taylor JS, Braasch I, Meyer A. The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes. Journal of Molecular Evolution. 53: 436-46. PMID 11675603 DOI: 10.1007/S002390010233  1
2001 Taylor JS, Van de Peer Y, Braasch I, Meyer A. Comparative genomics provides evidence for an ancient genome duplication event in fish. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 356: 1661-79. PMID 11604130 DOI: 10.1098/Rstb.2001.0975  1
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