Samuel F. Brockington, Ph.D. - Publications

2009 University of Florida, Gainesville, Gainesville, FL, United States 
Botany Biology, Evolution and Development Biology

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lopez-Nieves S, El-Azaz J, Men Y, Holland CK, Feng T, Brockington SF, Jez JM, Maeda HA. Two independently evolved natural mutations additively deregulate TyrA enzymes and boost tyrosine production in planta. The Plant Journal : For Cell and Molecular Biology. PMID 34807484 DOI: 10.1111/tpj.15597  1
2021 Pucker B, Singh HB, Kumari M, Khan MI, Brockington SF. The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigm. Bmc Plant Biology. 21: 297. PMID 34187352 DOI: 10.1186/s12870-021-03080-9  1
2021 Montero H, Lee T, Pucker B, Ferreras-Garrucho G, Oldroyd G, Brockington SF, Miyao A, Paszkowski U. A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34161289 DOI: 10.1073/pnas.2105281118  1
2020 Xu B, Taylor L, Pucker B, Feng T, Glover BJ, Brockington SF. The land plant-specific MIXTA-MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land. The New Phytologist. PMID 33051877 DOI: 10.1111/nph.16997  1
2020 Morales-Briones DF, Kadereit G, Tefarikis DT, Moore MJ, Smith SA, Brockington SF, Timoneda A, Yim WC, Cushman JC, Yang Y. Disentangling Sources of Gene Tree Discordance in Phylogenomic Datasets: Testing Ancient Hybridizations in Amaranthaceae s.l. Systematic Biology. PMID 32785686 DOI: 10.1093/Sysbio/Syaa066  1
2019 Airoldi CA, Hearn TJ, Brockington SF, Webb AAR, Glover BJ. TTG1 proteins regulate circadian activity as well as epidermal cell fate and pigmentation. Nature Plants. 5: 1145-1153. PMID 31712761 DOI: 10.1038/S41477-019-0544-3  1
2019 Sheehan H, Feng T, Walker-Hale N, Lopez-Nieves S, Pucker B, Guo R, Yim WC, Badgami R, Timoneda A, Zhao L, Tiley H, Copetti D, Sanderson MJ, Cushman JC, Moore MJ, ... ... Brockington SF, et al. Evolution of L-DOPA 4,5-dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales. The New Phytologist. PMID 31369159 DOI: 10.1111/Nph.16089  1
2019 Timoneda A, Feng T, Sheehan H, Walker-Hale N, Pucker B, Lopez-Nieves S, Guo R, Brockington S. The evolution of betalain biosynthesis in Caryophyllales. The New Phytologist. PMID 31172524 DOI: 10.1111/Nph.15980  1
2019 Yao G, Jin JJ, Li HT, Yang JB, Shiva Mandala V, Croley M, Mostow R, Douglas NA, Chase MW, Christenhusz MJM, Soltis DE, Soltis PS, Smith SA, Brockington SF, Moore MJ, et al. Plastid phylogenomic insights into the evolution of Caryophyllales. Molecular Phylogenetics and Evolution. PMID 30735725 DOI: 10.1016/J.Ympev.2018.12.023  1
2018 Pucker B, Brockington SF. Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes. Bmc Genomics. 19: 980. PMID 30594132 DOI: 10.1186/S12864-018-5360-Z  1
2018 Timoneda A, Sheehan H, Feng T, Lopez-Nieves S, Maeda HA, Brockington S. Redirecting Primary Metabolism to Boost Production of Tyrosine-Derived Specialised Metabolites in Planta. Scientific Reports. 8: 17256. PMID 30467357 DOI: 10.1038/S41598-018-33742-Y  1
2018 Wang N, Yang Y, Moore MJ, Brockington SF, Walker JF, Brown JW, Liang B, Feng T, Edwards C, Mikenas J, Olivieri J, Hutchison V, Timoneda A, Stoughton T, Puente R, et al. Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments. Molecular Biology and Evolution. PMID 30371871 DOI: 10.1093/Molbev/Msy200  1
2018 Walker JF, Yang Y, Feng T, Timoneda A, Mikenas J, Hutchison V, Edwards C, Wang N, Ahluwalia S, Olivieri J, Walker-Hale N, Majure LC, Puente R, Kadereit G, Lauterbach M, ... ... Brockington SF, et al. From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales. American Journal of Botany. PMID 29738076 DOI: 10.1002/Ajb2.1069  1
2018 Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, et al. 10KP: A phylodiverse genome sequencing plan. Gigascience. 7: 1-9. PMID 29618049 DOI: 10.1093/Gigascience/Giy013  1
2017 Lopez-Nieves S, Yang Y, Timoneda A, Wang M, Feng T, Smith SA, Brockington SF, Maeda HA. Relaxation of tyrosine pathway regulation underlies the evolution of betalain pigmentation in Caryophyllales. The New Phytologist. PMID 28990194 DOI: 10.1111/Nph.14822  1
2017 Mounce R, Smith P, Brockington S. Ex situ conservation of plant diversity in the world's botanic gardens. Nature Plants. PMID 28947807 DOI: 10.1038/S41477-017-0019-3  0.04
2017 Yang Y, Moore MJ, Brockington SF, Mikenas J, Olivieri J, Walker JF, Smith SA. Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events. The New Phytologist. PMID 28944472 DOI: 10.1111/Nph.14812  1
2017 Smith SA, Brown JW, Yang Y, Bruenn R, Drummond CP, Brockington SF, Walker JF, Last N, Douglas NA, Moore MJ. Disparity, diversity, and duplications in the Caryophyllales. The New Phytologist. PMID 28892163 DOI: 10.1111/Nph.14772  1
2017 Walker JF, Yang Y, Moore MJ, Mikenas J, Timoneda A, Brockington SF, Smith SA. Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales. American Journal of Botany. PMID 28634254 DOI: 10.3732/Ajb.1700083  1
2017 Yang Y, Moore MJ, Brockington SF, Timoneda A, Feng T, Marx HE, Walker JF, Smith SA. An efficient field and laboratory workflow for plant phylotranscriptomic projects. Applications in Plant Sciences. 5. PMID 28337391 DOI: 10.3732/Apps.1600128  1
2016 Hunter LJ, Brockington SF, Murphy AM, Pate AE, Gruden K, MacFarlane SA, Palukaitis P, Carr JP. RNA-dependent RNA polymerase 1 in potato (Solanum tuberosum) and its relationship to other plant RNA-dependent RNA polymerases. Scientific Reports. 6: 23082. PMID 26979928 DOI: 10.1038/Srep23082  1
2015 Brockington SF, Yang Y, Gandia-Herrero F, Covshoff S, Hibberd JM, Sage RF, Wong GK, Moore MJ, Smith SA. Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales. The New Phytologist. PMID 25966996 DOI: 10.1111/Nph.13441  1
2015 Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA. Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing. Molecular Biology and Evolution. 32: 2001-14. PMID 25837578 DOI: 10.1093/Molbev/Msv081  1
2015 Brockington SF, Moyroud E, Sayou C, Monniaux M, Nanao MH, Thévenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y, Wong GK, Weigel D, Dumas R, Parcy F. Evolution. Response to Comment on "A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity". Science (New York, N.Y.). 347: 621. PMID 25657241 DOI: 10.1126/Science.1256011  1
2014 Ellis AG, Brockington SF, de Jager ML, Mellers G, Walker RH, Glover BJ. Floral trait variation and integration as a function of sexual deception in Gorteria diffusa. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369: 20130563. PMID 25002705 DOI: 10.1098/Rstb.2013.0563  1
2014 Bennett T, Brockington SF, Rothfels C, Graham SW, Stevenson D, Kutchan T, Rolf M, Thomas P, Wong GK, Leyser O, Glover BJ, Harrison CJ. Paralogous radiations of PIN proteins with multiple origins of noncanonical PIN structure. Molecular Biology and Evolution. 31: 2042-60. PMID 24758777 DOI: 10.1093/Molbev/Msu147  1
2014 Sayou C, Monniaux M, Nanao MH, Moyroud E, Brockington SF, Thévenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y, Wong GK, Weigel D, Parcy F, Dumas R. A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science (New York, N.Y.). 343: 645-8. PMID 24436181 DOI: 10.1126/Science.1248229  1
2013 Stull GW, Moore MJ, Mandala VS, Douglas NA, Kates HR, Qi X, Brockington SF, Soltis PS, Soltis DE, Gitzendanner MA. A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes. Applications in Plant Sciences. 1. PMID 25202518 DOI: 10.3732/Apps.1200497  1
2013 Glover BJ, Walker RH, Moyroud E, Brockington SF. How to spot a flower. The New Phytologist. 197: 687-9. PMID 23293952 DOI: 10.1111/Nph.12112  1
2013 Brockington SF, Alvarez-Fernandez R, Landis JB, Alcorn K, Walker RH, Thomas MM, Hileman LC, Glover BJ. Evolutionary analysis of the MIXTA gene family highlights potential targets for the study of cellular differentiation. Molecular Biology and Evolution. 30: 526-40. PMID 23188591 DOI: 10.1093/Molbev/Mss260  1
2012 Brockington SF, Rudall PJ, Frohlich MW, Oppenheimer DG, Soltis PS, Soltis DE. 'Living stones' reveal alternative petal identity programs within the core eudicots. The Plant Journal : For Cell and Molecular Biology. 69: 193-203. PMID 21951031 DOI: 10.1111/J.1365-313X.2011.04797.X  1
2011 Brockington SF, Walker RH, Glover BJ, Soltis PS, Soltis DE. Complex pigment evolution in the Caryophyllales. The New Phytologist. 190: 854-64. PMID 21714182 DOI: 10.1111/J.1469-8137.2011.03687.X  1
2011 Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, et al. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany. 98: 704-30. PMID 21613169 DOI: 10.3732/Ajb.1000404  1
2011 Moore MJ, Hassan N, Gitzendanner MA, Bruenn RA, Croley M, Vandeventer A, Horn JW, Dhingra A, Brockington SF, Latvis M, Ramdial J, Alexandre R, Piedrahita A, Xi Z, Davis CC, et al. Phylogenetic analysis of the plastid inverted repeat for 244 species: Insights into deeper-level Angiosperm relationships from a long, slowly evolving sequence region International Journal of Plant Sciences. 172: 541-558. DOI: 10.1086/658923  1
2010 Chanderbali AS, Yoo MJ, Zahn LM, Brockington SF, Wall PK, Gitzendanner MA, Albert VA, Leebens-Mack J, Altman NS, Ma H, dePamphilis CW, Soltis DE, Soltis PS. Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower. Proceedings of the National Academy of Sciences of the United States of America. 107: 22570-5. PMID 21149731 DOI: 10.1073/Pnas.1013395108  1
2009 Soltis PS, Brockington SF, Yoo MJ, Piedrahita A, Latvis M, Moore MJ, Chanderbali AS, Soltis DE. Floral variation and floral genetics in basal angiosperms. American Journal of Botany. 96: 110-28. PMID 21628179 DOI: 10.3732/Ajb.0800182  1
2009 Witherspoon FD, Case A, Messer SJ, Bomgardner R, Phillips MW, Brockington S, Elton R. A contoured gap coaxial plasma gun with injected plasma armature. The Review of Scientific Instruments. 80: 083506. PMID 19725654 DOI: 10.1063/1.3202136  1
2009 Wang H, Moore MJ, Soltis PS, Bell CD, Brockington SF, Alexandre R, Davis CC, Latvis M, Manchester SR, Soltis DE. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proceedings of the National Academy of Sciences of the United States of America. 106: 3853-8. PMID 19223592 DOI: 10.1073/Pnas.0813376106  1
2009 Brockington SF, Alexandre R, Ramdial J, Moore MJ, Crawley S, Dhingra A, Hilu K, Soltis DE, Soltisy PS. Phylogeny of the Caryophyllales sensu lato: Revisiting hypotheses on pollination biology and perianth differentiation in the core Caryophyllales International Journal of Plant Sciences. 170: 627-643. DOI: 10.1086/597785  1
2008 Brockington SF, Mavrodiev E, Ramdial J, Dhingra A, Soltis PS, Soltis DE. Keep the DNA rolling: Multiple Displacement Amplification of archival plant DNA extracts Taxon. 57: 944-948. DOI: 10.1002/Tax.573022  1
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