Valeria Souza, Ph.D. - Publications

Affiliations: 
UNAM, Ciudad de México, Ciudad de México, Mexico 

114 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Eguiarte LE, Jiménez Barrón OA, Aguirre-Planter E, Scheinvar E, Gámez N, Gasca-Pineda J, Castellanos-Morales G, Moreno-Letelier A, Souza V. Evolutionary ecology of Agave: distribution patterns, phylogeny, and coevolution (an homage to Howard S. Gentry). American Journal of Botany. PMID 33576061 DOI: 10.1002/ajb2.1609  0.76
2020 García-Ulloa MI, Escalante AE, Moreno-Letelier A, Eguiarte LE, Souza V. Evolutionary Rescue of an Environmental in Response to Anthropogenic Perturbation. Frontiers in Microbiology. 11: 563885. PMID 33552002 DOI: 10.3389/fmicb.2020.563885  0.76
2020 Marini-Macouzet C, Muñoz L, Gonzalez-Rubio A, Eguiarte LE, Souza V, Velez P. Experimental Analysis of Interactions Among Saprotrophic Fungi from A Phosphorous-Poor Desert Oasis in the Chihuahuan Desert. Mycobiology. 48: 410-417. PMID 33177920 DOI: 10.1080/12298093.2020.1788271  0.76
2020 Hernández L, Vicens A, Eguiarte LE, Souza V, De Anda V, González JM. Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria. Peerj. 8: e9861. PMID 32974097 DOI: 10.7717/Peerj.9861  0.76
2020 Vázquez-Rosas-Landa M, Ponce-Soto GY, Aguirre-Liguori JA, Thakur S, Scheinvar E, Barrera-Redondo J, Ibarra-Laclette E, Guttman DS, Eguiarte LE, Souza V. Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation. Bmc Genomics. 21: 418. PMID 32571204 DOI: 10.1186/S12864-020-06829-Y  0.76
2020 Okie JG, Poret-Peterson AT, Lee ZM, Richter A, Alcaraz LD, Eguiarte LE, Siefert JL, Souza V, Dupont CL, Elser JJ. Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment. Elife. 9. PMID 31989922 DOI: 10.7554/Elife.49816  0.76
2020 Ojeda M, Velez P, Espinosa-asuar L, Eguiarte LE, Souza V. A new species of Trhypochthoniellus (Acari: Oribatida: Trhypochthoniidae) from Cuatro Ciénegas, Coahuila, Mexico, and a key to the world species Systematic & Applied Acarology. 25: 974-985. DOI: 10.11158/Saa.25.6.3  0.76
2019 Okie JG, Poret-Peterson AT, Lee ZM, Richter A, Alcaraz LD, Eguiarte LE, Siefert JL, Souza V, Dupont CL, Elser JJ. Author response: Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment Elife. DOI: 10.7554/Elife.49816.Sa2  0.76
2018 De Anda V, Zapata-Peñasco I, Blaz J, Poot-Hernández AC, Contreras-Moreira B, González-Laffitte M, Gámez-Tamariz N, Hernández-Rosales M, Eguiarte LE, Souza V. Understanding the Mechanisms Behind the Response to Environmental Perturbation in Microbial Mats: A Metagenomic-Network Based Approach. Frontiers in Microbiology. 9: 2606. PMID 30555424 DOI: 10.3389/Fmicb.2018.02606  0.76
2018 Souza V, Moreno-Letelier A, Travisano M, Alcaraz LD, Olmedo G, Eguiarte LE. The lost world of Cuatro Ciénegas Basin, a relictual bacterial niche in a desert oasis. Elife. 7. PMID 30457104 DOI: 10.7554/Elife.38278  0.76
2018 Velez P, Espinosa-Asuar L, Figueroa M, Gasca-Pineda J, Aguirre-von-Wobeser E, Eguiarte LE, Hernandez-Monroy A, Souza V. Nutrient Dependent Cross-Kingdom Interactions: Fungi and Bacteria From an Oligotrophic Desert Oasis. Frontiers in Microbiology. 9: 1755. PMID 30131780 DOI: 10.3389/Fmicb.2018.01755  0.76
2018 Velez P, Ojeda M, Espinosa-Asuar L, Pérez TM, Eguiarte LE, Souza V. Experimental and molecular approximation to microbial niche: trophic interactions between oribatid mites and microfungi in an oligotrophic freshwater system. Peerj. 6: e5200. PMID 30018858 DOI: 10.7717/Peerj.5200  0.76
2018 Rocha-Munive MG, Soberón M, Castañeda S, Niaves E, Scheinvar E, Eguiarte LE, Mota-Sánchez D, Rosales-Robles E, Nava-Camberos U, Martínez-Carrillo JL, Blanco CA, Bravo A, Souza V. Evaluation of the Impact of Genetically Modified Cotton After 20 Years of Cultivation in Mexico. Frontiers in Bioengineering and Biotechnology. 6: 82. PMID 29988354 DOI: 10.3389/Fbioe.2018.00082  0.76
2018 Taboada B, Isa P, Gutiérrez-Escolano AL, Del Ángel RM, Ludert JE, Vázquez N, Tapia-Palacios MA, Chávez P, Garrido E, Espinosa AC, Eguiarte LE, López S, Souza V, Arias CF. The viral structure of the Cuatro Ciénegas Basin, a unique oasis in Northern Mexico, reveals a highly diverse population at a small geographic scale. Applied and Environmental Microbiology. PMID 29625974 DOI: 10.1128/Aem.00465-18  0.76
2018 Souza V, Moreno-Letelier A, Travisano M, Alcaraz LD, Olmedo G, Eguiarte LE. Author response: The lost world of Cuatro Ciénegas Basin, a relictual bacterial niche in a desert oasis Elife. DOI: 10.7554/Elife.38278.016  0.76
2017 Montiel-González C, Tapia-Torres Y, Souza V, García-Oliva F. The response of soil microbial communities to variation in annual precipitation depends on soil nutritional status in an oligotrophic desert. Peerj. 5: e4007. PMID 29134149 DOI: 10.7717/Peerj.4007  0.76
2017 De Anda V, Zapata-Peñasco I, Poot-Hernandez AC, Eguiarte LE, Contreras-Moreira B, Souza V. MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle. Gigascience. PMID 29069412 DOI: 10.1093/Gigascience/Gix096  0.76
2017 Aguirre-Liguori JA, Tenaillon MI, Vázquez-Lobo A, Gaut BS, Jaramillo-Correa JP, Montes-Hernandez S, Souza V, Eguiarte LE. Connecting genomic patterns of local adaptation and niche suitability in teosintes. Molecular Ecology. PMID 28612956 DOI: 10.1111/Mec.14203  0.76
2017 Lee ZM, Poret-Peterson AT, Siefert JL, Kaul D, Moustafa A, Allen AE, Dupont CL, Eguiarte LE, Souza V, Elser JJ. Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond. Frontiers in Microbiology. 8: 949. PMID 28611750 DOI: 10.3389/Fmicb.2017.00949  0.76
2017 Arocha-Garza HF, Canales-Del Castillo R, Eguiarte LE, Souza V, De la Torre-Zavala S. High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis. Peerj. 5: e3247. PMID 28480140 DOI: 10.7717/Peerj.3247  0.76
2017 Gutiérrez-Preciado A, Vargas-Chávez C, Reyes-Prieto M, Ordoñez OF, Santos-García D, Rosas-Pérez T, Valdivia-Anistro J, Rebollar EA, Saralegui A, Moya A, Merino E, Farías ME, Latorre A, Souza V. The genomic sequence of Exiguobacterium chiriqhucha str. N139 reveals a species that thrives in cold waters and extreme environmental conditions. Peerj. 5: e3162. PMID 28439458 DOI: 10.7717/Peerj.3162  0.44
2017 Rodríguez-Torres DM, Islas-Robles Á, Gómez-Lunar Z, Delaye L, Hernández-González I, Souza V, Travisano M, Olmedo-Álvarez G. Phenotypic Microdiversity and Phylogenetic Signal Analysis of Traits Related to Social Interaction in Bacillus spp. from Sediment Communities. Frontiers in Microbiology. 8: 29. PMID 28194138 DOI: 10.3389/Fmicb.2017.00029  0.72
2017 Eguiarte LE, Souza V, Silva-Montellano A. Evolución de la familia Agavaceae: filogenia, biología reproductiva y genética de poblaciones Boletin De La Sociedad Botanica De Mexico. 131-151. DOI: 10.17129/Botsci.1618  0.76
2016 Pajares S, Bohannan BJ, Souza V. Editorial: The Role of Microbial Communities in Tropical Ecosystems. Frontiers in Microbiology. 7: 1805. PMID 27891123 DOI: 10.3389/Fmicb.2016.01805  0.76
2016 Pajares S, Escalante AE, Noguez AM, García-Oliva F, Martínez-Piedragil C, Cram SS, Eguiarte LE, Souza V. Spatial heterogeneity of physicochemical properties explains differences in microbial composition in arid soils from Cuatro Cienegas, Mexico. Peerj. 4: e2459. PMID 27652001 DOI: 10.7717/Peerj.2459  0.76
2016 Hernández-Becerra N, Tapia-Torres Y, Beltrán-Paz O, Blaz J, Souza V, García-Oliva F. Agricultural land-use change in a Mexican oligotrophic desert depletes ecosystem stability. Peerj. 4: e2365. PMID 27602304 DOI: 10.7717/Peerj.2365  0.76
2016 Velez P, Gasca-Pineda J, Rosique-Gil E, Eguiarte LE, Espinosa-Asuar L, Souza V. Microfungal oasis in an oligotrophic desert: diversity patterns and community structure in three freshwater systems of Cuatro Ciénegas, Mexico. Peerj. 4: e2064. PMID 27280070 DOI: 10.7717/Peerj.2064  1
2016 Tapia-Torres Y, Rodríguez-Torres MD, Elser JJ, Islas A, Souza V, García-Oliva F, Olmedo-Álvarez G. How to live with phosphorus scarcity in soil and sediment: Lessons from bacteria. Applied and Environmental Microbiology. PMID 27235437 DOI: 10.1128/Aem.00160-16  0.76
2016 Gómez-Lunar Z, Hernández-González I, Rodríguez-Torres MD, Souza V, Olmedo-Álvarez G. Microevolution Analysis of Bacillus coahuilensis Unveils Differences in Phosphorus Acquisition Strategies and Their Regulation. Frontiers in Microbiology. 7: 58. PMID 26903955 DOI: 10.3389/Fmicb.2016.00058  0.36
2015 Valdivia-Anistro JA, Eguiarte-Fruns LE, Delgado-Sapién G, Márquez-Zacarías P, Gasca-Pineda J, Learned J, Elser JJ, Olmedo-Alvarez G, Souza V. Variability of rRNA Operon Copy Number and Growth Rate Dynamics of Bacillus Isolated from an Extremely Oligotrophic Aquatic Ecosystem. Frontiers in Microbiology. 6: 1486. PMID 26779143 DOI: 10.3389/Fmicb.2015.01486  1
2015 Espinosa-Asuar L, Escalante AE, Gasca-Pineda J, Blaz J, Peña L, Eguiarte LE, Souza V. Aquatic bacterial assemblage structure in Pozas Azules, Cuatro Cienegas Basin, Mexico: Deterministic vs. stochastic processes. International Microbiology : the Official Journal of the Spanish Society For Microbiology. 18: 105-15. PMID 26496618 DOI: 10.2436/20.1501.01.240  1
2015 Aguirre-von-Wobeser E, Eguiarte LE, Souza V, Soberón-Chávez G. Theoretical analysis of the cost of antagonistic activity for aquatic bacteria in oligotrophic environments. Frontiers in Microbiology. 6: 490. PMID 26074891 DOI: 10.3389/Fmicb.2015.00490  1
2015 Ponce-Soto GY, Aguirre-von-Wobeser E, Eguiarte LE, Elser JJ, Lee ZM, Souza V. Enrichment experiment changes microbial interactions in an ultra-oligotrophic environment. Frontiers in Microbiology. 6: 246. PMID 25883593 DOI: 10.3389/Fmicb.2015.00246  1
2015 Lee ZM, Steger L, Corman JR, Neveu M, Poret-Peterson AT, Souza V, Elser JJ. Response of a stoichiometrically imbalanced ecosystem to manipulation of nutrient supplies and ratios. Plos One. 10: e0123949. PMID 25881015 DOI: 10.1371/Journal.Pone.0123949  1
2015 Pajares S, Souza V, Eguiarte LE. Multivariate and phylogenetic analyses assessing the response of bacterial mat communities from an ancient oligotrophic aquatic ecosystem to different scenarios of long-term environmental disturbance. Plos One. 10: e0119741. PMID 25781013 DOI: 10.1371/Journal.Pone.0119741  1
2015 Carson EW, Souza V, Espinosa-Pérez H, Turner TF. Mitochondrial DNA Diversity and Phylogeography of Lucania interioris Inform Biodiversity Conservation in the Cuatro Ciénegas Basin, México Western North American Naturalist. 75: 200-208. DOI: 10.3398/064.075.0208  1
2015 Tapia-Torres Y, Elser JJ, Souza V, García-Oliva F. Ecoenzymatic stoichiometry at the extremes: How microbes cope in an ultra-oligotrophic desert soil Soil Biology and Biochemistry. 87: 34-42. DOI: 10.1016/J.Soilbio.2015.04.007  1
2015 Tapia-Torres Y, López-Lozano NE, Souza V, García-Oliva F. Vegetation-soil system controls soil mechanisms for nitrogen transformations in an oligotrophic Mexican desert Journal of Arid Environments. 114: 62-69. DOI: 10.1016/J.Jaridenv.2014.11.007  1
2014 Avitia M, Escalante AE, Rebollar EA, Moreno-Letelier A, Eguiarte LE, Souza V. Population expansions shared among coexisting bacterial lineages are revealed by genetic evidence. Peerj. 2: e696. PMID 25548732 DOI: 10.7717/Peerj.696  1
2014 Aguirre-von-Wobeser E, Soberón-Chávez G, Eguiarte LE, Ponce-Soto GY, Vázquez-Rosas-Landa M, Souza V. Two-role model of an interaction network of free-living γ-proteobacteria from an oligotrophic environment. Environmental Microbiology. 16: 1366-77. PMID 24128119 DOI: 10.1111/1462-2920.12305  1
2014 Perroni Y, García-Oliva F, Souza V. Plant species identity and soil P forms in an oligotrophic grassland-desert scrub system Journal of Arid Environments. 108: 29-37. DOI: 10.1016/J.Jaridenv.2014.04.009  1
2014 Perroni Y, García-Oliva F, Tapia-Torres Y, Souza V. Relationship between soil P fractions and microbial biomass in an oligotrophic grassland-desert scrub system Ecological Research. 29: 463-472. DOI: 10.1007/S11284-014-1138-1  1
2014 Espinosa-Asuar L, Escalante AE, Falcón LI, Bonilla-Rosso G, Ramírez-Barahona S, Eguiarte LE, Souza V. Analysis of three molecular methods to describe sea Yucatan, Mexico environmental prokaryotic taxa | Comparación de tres métodos moleculares para el análisis de procariontes ambientales en el mar del canal de Yucatán, México Hidrobiologica. 24: 257-270.  1
2013 Pajares S, Eguiarte LE, Bonilla-Rosso G, Souza V. Drastic changes in aquatic bacterial populations from the Cuatro Cienegas Basin (Mexico) in response to long-term environmental stress. Antonie Van Leeuwenhoek. 104: 1159-75. PMID 24072549 DOI: 10.1007/S10482-013-0038-7  1
2013 Delgado G, Souza V, Morales R, Cerritos R, González-González A, Méndez JL, Vázquez V, Cravioto A. Genetic characterization of atypical Citrobacter freundii. Plos One. 8: e74120. PMID 24069274 DOI: 10.1371/Journal.Pone.0074120  1
2013 López-Lozano NE, Heidelberg KB, Nelson WC, García-Oliva F, Eguiarte LE, Souza V. Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico. Peerj. 1: e47. PMID 23638384 DOI: 10.7717/Peerj.47  1
2013 Pérez-Gutiérrez RA, López-Ramírez V, Islas Á, Alcaraz LD, Hernández-González I, Olivera BC, Santillán M, Eguiarte LE, Souza V, Travisano M, Olmedo-Alvarez G. Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network. The Isme Journal. 7: 487-97. PMID 23096405 DOI: 10.1038/Ismej.2012.119  1
2013 González-González A, Sánchez-Reyes LL, Delgado Sapien G, Eguiarte LE, Souza V. Hierarchical clustering of genetic diversity associated to different levels of mutation and recombination in Escherichia coli: a study based on Mexican isolates. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 13: 187-97. PMID 22995280 DOI: 10.1016/J.Meegid.2012.09.003  1
2013 Carson EW, Espinosa-Pérez H, Souza V. Low Mitochondrial Dna Sequence Variation in the Microendemic Cuatro Ciénegas Platyfish Xiphophorus gordoni Western North American Naturalist. 73: 224-229. DOI: 10.3398/064.073.0212  1
2013 Eguiarte LE, Aguirre-Planter E, Aguirre X, Colín R, González A, Rocha M, Scheinvar E, Trejo L, Souza V. From Isozymes to Genomics: Population Genetics and Conservation of Agave in México Botanical Review. 79: 483-506. DOI: 10.1007/S12229-013-9123-X  1
2012 Rodríguez-Verdugo A, Souza V, Eguiarte LE, Escalante AE. Diversity across Seasons of Culturable Pseudomonas from a Desiccation Lagoon in Cuatro Cienegas, Mexico. International Journal of Microbiology. 2012: 201389. PMID 23093963 DOI: 10.1155/2012/201389  1
2012 Siefert JL, Souza V, Eguiarte L, Olmedo-Alvarez G. Microbial stowaways: inimitable survivors or hopeless pioneers? Astrobiology. 12: 710-5. PMID 22920519 DOI: 10.1089/Ast.2012.0833  1
2012 López-Lozano NE, Eguiarte LE, Bonilla-Rosso G, García-Oliva F, Martínez-Piedragil C, Rooks C, Souza V. Bacterial communities and the nitrogen cycle in the gypsum soils of Cuatro Ciénegas Basin, coahuila: a Mars analogue. Astrobiology. 12: 699-709. PMID 22920518 DOI: 10.1089/Ast.2012.0840  1
2012 Moreno-Letelier A, Olmedo-Alvarez G, Eguiarte LE, Souza V. Divergence and phylogeny of Firmicutes from the Cuatro Ciénegas Basin, Mexico: a window to an ancient ocean. Astrobiology. 12: 674-84. PMID 22920517 DOI: 10.1089/Ast.2011.0685  1
2012 Bonilla-Rosso G, Peimbert M, Alcaraz LD, Hernández I, Eguiarte LE, Olmedo-Alvarez G, Souza V. Comparative metagenomics of two microbial mats at Cuatro Ciénegas Basin II: community structure and composition in oligotrophic environments. Astrobiology. 12: 659-73. PMID 22920516 DOI: 10.1089/Ast.2011.0724  1
2012 Peimbert M, Alcaraz LD, Bonilla-Rosso G, Olmedo-Alvarez G, García-Oliva F, Segovia L, Eguiarte LE, Souza V. Comparative metagenomics of two microbial mats at Cuatro Ciénegas Basin I: ancient lessons on how to cope with an environment under severe nutrient stress. Astrobiology. 12: 648-58. PMID 22920515 DOI: 10.1089/Ast.2011.0694  1
2012 Souza V, Siefert JL, Escalante AE, Elser JJ, Eguiarte LE. The Cuatro Ciénegas Basin in Coahuila, Mexico: an astrobiological Precambrian Park. Astrobiology. 12: 641-7. PMID 22920514 DOI: 10.1089/Ast.2011.0675  1
2012 Souza V, Eguiarte LE, Travisano M, Elser JJ, Rooks C, Siefert JL. Travel, sex, and food: what's speciation got to do with it? Astrobiology. 12: 634-40. PMID 22920513 DOI: 10.1089/Ast.2011.0768  1
2012 Nitti A, Daniels CA, Siefert J, Souza V, Hollander D, Breitbart M. Spatially resolved genomic, stable isotopic, and lipid analyses of a modern freshwater microbialite from Cuatro Ciénegas, Mexico. Astrobiology. 12: 685-98. PMID 22882001 DOI: 10.1089/Ast.2011.0812  1
2012 Rebollar EA, Avitia M, Eguiarte LE, González-González A, Mora L, Bonilla-Rosso G, Souza V. Water-sediment niche differentiation in ancient marine lineages of Exiguobacterium endemic to the Cuatro Cienegas Basin. Environmental Microbiology. 14: 2323-33. PMID 22639906 DOI: 10.1111/J.1462-2920.2012.02784.X  1
2012 Bonilla-Rosso G, Eguiarte LE, Romero D, Travisano M, Souza V. Understanding microbial community diversity metrics derived from metagenomes: performance evaluation using simulated data sets. Fems Microbiology Ecology. 82: 37-49. PMID 22554028 DOI: 10.1111/J.1574-6941.2012.01405.X  1
2012 Pajares S, Bonilla-Rosso G, Travisano M, Eguiarte LE, Souza V. Mesocosms of aquatic bacterial communities from the Cuatro Cienegas Basin (Mexico): a tool to test bacterial community response to environmental stress. Microbial Ecology. 64: 346-58. PMID 22460437 DOI: 10.1007/S00248-012-0045-7  1
2011 Toribio J, Escalante AE, Caballero-Mellado J, González-González A, Zavala S, Souza V, Soberón-Chávez G. Characterization of a novel biosurfactant producing Pseudomonas koreensis lineage that is endemic to Cuatro Ciénegas Basin. Systematic and Applied Microbiology. 34: 531-5. PMID 21592712 DOI: 10.1016/J.Syapm.2011.01.007  1
2011 Moreno-Letelier A, Olmedo G, Eguiarte LE, Martinez-Castilla L, Souza V. Parallel Evolution and Horizontal Gene Transfer of the pst Operon in Firmicutes from Oligotrophic Environments. International Journal of Evolutionary Biology. 2011: 781642. PMID 21461370 DOI: 10.4061/2011/781642  0.76
2011 Domínguez-Escobar J, Beltrán Y, Bergman B, Díez B, Ininbergs K, Souza V, Falcón LI. Phylogenetic and molecular clock inferences of cyanobacterial strains within Rivulariaceae from distant environments. Fems Microbiology Letters. 316: 90-9. PMID 21208268 DOI: 10.1111/J.1574-6968.2010.02195.X  1
2011 Cerritos R, Eguiarte LE, Avitia M, Siefert J, Travisano M, Rodríguez-Verdugo A, Souza V. Diversity of culturable thermo-resistant aquatic bacteria along an environmental gradient in Cuatro Ciénegas, Coahuila, México. Antonie Van Leeuwenhoek. 99: 303-18. PMID 20711674 DOI: 10.1007/S10482-010-9490-9  1
2010 Lozano L, Hernández-González I, Bustos P, Santamaría RI, Souza V, Young JP, Dávila G, González V. Evolutionary dynamics of insertion sequences in relation to the evolutionary histories of the chromosome and symbiotic plasmid genes of Rhizobium etli populations. Applied and Environmental Microbiology. 76: 6504-13. PMID 20675442 DOI: 10.1128/Aem.01001-10  1
2010 Alcaraz LD, Moreno-Hagelsieb G, Eguiarte LE, Souza V, Herrera-Estrella L, Olmedo G. Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics. Bmc Genomics. 11: 332. PMID 20504335 DOI: 10.1186/1471-2164-11-332  1
2010 Rojas-Oropeza M, Dendooven L, Garza-Avendaño L, Souza V, Philippot L, Cabirol N. Effects of biosolids application on nitrogen dynamics and microbial structure in a saline-sodic soil of the former Lake Texcoco (Mexico) Bioresource Technology. 101: 2491-2498. PMID 19963368 DOI: 10.1016/J.Biortech.2009.10.088  1
2010 Mello BA, Souza VMCS, Cajueiro DO, Andrade RFS. Network evolution based on minority game with herding behavior European Physical Journal B. 76: 147-156. DOI: 10.1140/epjb/e2010-00179-1  1
2009 Escalante AE, Caballero-Mellado J, Martínez-Aguilar L, Rodríguez-Verdugo A, González-González A, Toribio-Jiménez J, Souza V. Pseudomonas cuatrocienegasensis sp. nov., isolated from an evaporating lagoon in the Cuatro Cienegas valley in Coahuila, Mexico. International Journal of Systematic and Evolutionary Microbiology. 59: 1416-20. PMID 19502326 DOI: 10.1099/Ijs.0.006189-0  1
2009 Breitbart M, Hoare A, Nitti A, Siefert J, Haynes M, Dinsdale E, Edwards R, Souza V, Rohwer F, Hollander D. Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico. Environmental Microbiology. 11: 16-34. PMID 18764874 DOI: 10.1111/J.1462-2920.2008.01725.X  1
2009 Otero XL, Ferreira TO, Huerta-Díaz MA, Partiti CSM, Souza V, Vidal-Torrado P, Macías F. Geochemistry of iron and manganese in soils and sediments of a mangrove system, Island of Pai Matos (Cananeia - SP, Brazil) Geoderma. 148: 318-335. DOI: 10.1016/j.geoderma.2008.10.016  1
2008 Falcón LI, Noguez AM, Espinosa-Asuar L, Eguiarte LE, Souza V. Evidence of biogeography in surface ocean bacterioplankton assemblages. Marine Genomics. 1: 55-61. PMID 21798154 DOI: 10.1016/J.Margen.2008.06.005  1
2008 Souza V, Eguiarte LE, Siefert J, Elser JJ. Microbial endemism: does phosphorus limitation enhance speciation? Nature Reviews. Microbiology. 6: 559-64. PMID 18521074 DOI: 10.1038/Nrmicro1917  1
2008 Alcaraz LD, Olmedo G, Bonilla G, Cerritos R, Hernández G, Cruz A, Ramírez E, Putonti C, Jiménez B, Martínez E, López V, Arvizu JL, Ayala F, Razo F, Caballero J, ... ... Souza V, et al. The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment. Proceedings of the National Academy of Sciences of the United States of America. 105: 5803-8. PMID 18408155 DOI: 10.1073/Pnas.0800981105  1
2008 Cerritos R, Vinuesa P, Eguiarte LE, Herrera-Estrella L, Alcaraz-Peraza LD, Arvizu-Gómez JL, Olmedo G, Ramirez E, Siefert JL, Souza V. Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico. International Journal of Systematic and Evolutionary Microbiology. 58: 919-23. PMID 18398195 DOI: 10.1099/Ijs.0.64959-0  1
2008 Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, ... ... Souza V, et al. Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature. 452: 340-3. PMID 18311127 DOI: 10.1038/Nature06735  1
2008 Díaz-Mejía JJ, Amábile-Cuevas CF, Rosas I, Souza V. An analysis of the evolutionary relationships of integron integrases, with emphasis on the prevalence of class 1 integrons in Escherichia coli isolates from clinical and environmental origins. Microbiology (Reading, England). 154: 94-102. PMID 18174129 DOI: 10.1099/Mic.0.2007/008649-0  1
2008 Souza VS, Vidal-Torrado P, Garcia-Gonzaléz MT, Otero XL, Macías F. Soil mineralogy of mangrove forests from the state of São Paulo, southeastern Brazil Soil Science Society of America Journal. 72: 848-857. DOI: 10.2136/sssaj2007.0197  1
2008 Noguez AM, Escalante AE, Forney LJ, Nava-Mendoza M, Rosas I, Souza V, García-Oliva F. Soil aggregates in a tropical deciduous forest: Effects on C and N dynamics, and microbial communities as determined by t-RFLPs Biogeochemistry. 89: 209-220. DOI: 10.1007/S10533-008-9214-7  1
2007 Falcón LI, Cerritos R, Eguiarte LE, Souza V. Nitrogen fixation in microbial mat and stromatolite communities from Cuatro Cienegas, Mexico Microbial Ecology. 54: 363-373. PMID 17450393 DOI: 10.1007/S00248-007-9240-3  1
2007 Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA, Hoffman JM, Remington K, Beeson K, Tran B, Smith H, Baden-Tillson H, Stewart C, ... ... Souza V, et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. Plos Biology. 5: e77. PMID 17355176 DOI: 10.1371/Journal.Pbio.0050077  1
2006 Cabellos-Avelar T, Souza V, Membrillo-Hernández J. Spent media from cultures of environmental isolates of Escherichia coli can suppress the deficiency of biofilm formation under anoxic conditions of laboratory E. coli strains. Fems Microbiology Ecology. 58: 414-24. PMID 17117986 DOI: 10.1111/J.1574-6941.2006.00186.X  1
2006 Good-Avila SV, Souza V, Gaut BS, Eguiarte LE. Timing and rate of speciation in Agave (Agavaceae). Proceedings of the National Academy of Sciences of the United States of America. 103: 9124-9. PMID 16757559 DOI: 10.1073/Pnas.0603312103  1
2006 Velasco-Villa A, Orciari LA, Juárez-Islas V, Gómez-Sierra M, Padilla-Medina I, Flisser A, Souza V, Castillo A, Franka R, Escalante-Mañe M, Sauri-González I, Rupprecht CE. Molecular diversity of rabies viruses associated with bats in Mexico and other countries of the Americas. Journal of Clinical Microbiology. 44: 1697-710. PMID 16672396 DOI: 10.1128/Jcm.44.5.1697-1710.2006  1
2006 Souza V, Espinosa-Asuar L, Escalante AE, Eguiarte LE, Farmer J, Forney L, Lloret L, Rodríguez-Martínez JM, Soberón X, Dirzo R, Elser JJ. An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert. Proceedings of the National Academy of Sciences of the United States of America. 103: 6565-70. PMID 16618921 DOI: 10.1073/Pnas.0601434103  1
2005 Silva C, Vinuesa P, Eguiarte LE, Souza V, Martínez-Romero E. Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes. Molecular Ecology. 14: 4033-50. PMID 16262857 DOI: 10.1111/J.1365-294X.2005.02721.X  1
2005 Velasco-Villa A, Orciari LA, Souza V, Juárez-Islas V, Gomez-Sierra M, Castillo A, Flisser A, Rupprecht CE. Molecular epizootiology of rabies associated with terrestrial carnivores in Mexico. Virus Research. 111: 13-27. PMID 15896399 DOI: 10.1016/J.Virusres.2005.03.007  1
2005 Castillo A, Eguiarte LE, Souza V. A genomic population genetics analysis of the pathogenic enterocyte effacement island in Escherichia coli: the search for the unit of selection. Proceedings of the National Academy of Sciences of the United States of America. 102: 1542-7. PMID 15668384 DOI: 10.1073/Pnas.0408633102  1
2005 Noguez AM, Arita HT, Escalante AE, Forney LJ, García-Oliva F, Souza V. Microbial macroecology: Highly structured prokaryotic soil assemblages in a tropical deciduous forest Global Ecology and Biogeography. 14: 241-248. DOI: 10.1111/J.1466-822X.2005.00156.X  1
2005 Elser JJ, Schampel JH, Garcia-Pichel F, Wade BD, Souza V, Eguiarte L, Escalante A, Farmer JD. Effects of phosphorus enrichment and grazing snails on modern stromatolitic microbial communities Freshwater Biology. 50: 1808-1825. DOI: 10.1111/J.1365-2427.2005.01451.X  1
2003 Maravilla P, Valera A, Souza V, Martinez-Gordillo M, Flisser A. Isozyme analysis of Taenia solium isolates from Mexico and Colombia. MemóRias Do Instituto Oswaldo Cruz. 98: 1049-50. PMID 15049089 DOI: 10.1590/S0074-02762003000800013  1
2003 Maravilla P, Souza V, Valera A, Romero-Valdovinos M, Lopez-Vidal Y, Dominguez-Alpizar JL, Ambrosio J, Kawa S, Flisser A. Detection of genetic variation in Taenia solium. The Journal of Parasitology. 89: 1250-4. PMID 14740922 DOI: 10.1645/Ge-2786Rn  1
2003 Bjedov I, Tenaillon O, Gérard B, Souza V, Denamur E, Radman M, Taddei F, Matic I. Stress-induced mutagenesis in bacteria. Science (New York, N.Y.). 300: 1404-9. PMID 12775833 DOI: 10.1126/Science.1082240  1
2003 Silva C, Vinuesa P, Eguiarte LE, Martínez-Romero E, Souza V. Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: population genetics and biogeographic implications. Applied and Environmental Microbiology. 69: 884-93. PMID 12571008 DOI: 10.1128/Aem.69.2.884-893.2003  1
2003 Eguiarte LE, Castillo A, Souza V. Molecular and genomic evolution in angiosperms | Evolución molecular y genómica en angiospermas Interciencia. 28: 141-147+183.  1
2002 Souza V, Travisano M, Turner PE, Eguiarte LE. Does experimental evolution reflect patterns in natural populations? E. coli strains from long-term studies compared with wild isolates. Antonie Van Leeuwenhoek. 81: 143-53. PMID 12448713 DOI: 10.1023/A:1020594013195  1
2002 Souza V, Castillo A, Eguiarte LE. The Evolutionary Ecology of Escherichia coli American Scientist. 90: 332-341. DOI: 10.1511/2002.27.788  1
2001 Solís-Guzmán G, Ramírez-Santos J, Souza V, Gómez-Eichelmann MC. Analysis of the regulatory region of the heat-shock gene rpoH of Escherichia coli strains isolated from non-human hosts Fems Microbiology Letters. 205: 191-196. PMID 11750801 DOI: 10.1111/J.1574-6968.2001.Tb10946.X  1
2001 Sandner L, Eguiarte LE, Navarro A, Cravioto A, Souza V. The elements of the locus of enterocyte effacement in human and wild mammal isolates of Escherichia coli: Evolution by assemblage or disruption? Microbiology. 147: 3149-3158. PMID 11700366 DOI: 10.1099/00221287-147-11-3149  1
2001 Peek AS, Souza V, Eguiarte LE, Gaut BS. The interaction of protein structure, selection, and recombination on the evolution of the type-1 fimbrial major subunit (fimA) from Escherichia coli. Journal of Molecular Evolution. 52: 193-204. PMID 11244580 DOI: 10.1007/S002390010148  1
2001 Souza V, Castillo A, Rocha M, Sandner L, Silva C, Eguiarte LE. Ecología evolutiva de Escherichia coli Interciencia. 26: 513-517.  1
2000 Johnson JR, Souza V, Rocha M, Valera A, Eguiarte LE. Genetic diversity within E. coli [1] (multilple letters) Applied and Environmental Microbiology. 66: 5104-5105. PMID 11184318 DOI: 10.1128/AEM.66.11.5104-5105.2000  1
1999 Souza V, Rocha M, Valera A, Eguiarte LE. Genetic structure of natural populations of Escherichia coli in wild hosts on different continents Applied and Environmental Microbiology. 65: 3373-3385. PMID 10427022 DOI: 10.1128/Aem.65.8.3373-3385.1999  1
1999 Silva C, Eguiarte LE, Souza V. Reticulated and epidemic population genetic structure of Rhizobium etli biovar phaseoli in a traditionally managed locality in Mexico Molecular Ecology. 8: 277-287. DOI: 10.1046/J.1365-294X.1999.00564.X  1
1998 García-Franco JG, Souza V, Eguiarte LE, Rico-Gray V. Genetic variation, genetic structure and effective population size in the tropical holoparasitic endophyte Bdallophyton bambusarum (Rafflesiaceae) Plant Systematics and Evolution. 210: 271-288. DOI: 10.1007/Bf00985672  1
1997 Souza V, Eguiarte LE. Bacteria gone native vs. bacteria gone awry?: Plasmidic transfer and bacterial evolution Proceedings of the National Academy of Sciences of the United States of America. 94: 5501-5503. PMID 9159098 DOI: 10.1073/Pnas.94.11.5501  1
1997 Souza V, Turner PE, Lenski RE. Long-term experimental evolution in Escherichia coli. V. Effects of recombination with immigrant genotypes on the rate of bacterial evolution Journal of Evolutionary Biology. 10: 743-769. DOI: 10.1046/J.1420-9101.1997.10050743.X  1
1996 Turner PE, Souza V, Lenski RE. Tests of ecological mechanisms promoting the stable coexistence of two bacterial genotypes Ecology. 77: 2119-2129. DOI: 10.2307/2265706  1
1994 Lenski RE, Souza V, Duong LP, Phan QG, Nguyen TN, Bertrand KP. Epistatic effects of promoter and repressor functions of the Tn10 tetracycline-resistance operon of the fitness of Escherichia coli. Molecular Ecology. 3: 127-35. PMID 8019689 DOI: 10.1111/J.1365-294X.1994.Tb00113.X  1
1994 Souza V, Eguiarte L, Avila G, Cappello R, Gallardo C, Montoya J, Pinero D. Genetic structure of Rhizobium etli biovar phaseoli associated with wild and cultivated bean plants (Phaseolus vulgaris and Phaseolus coccineus) in Morelos, Mexico Applied and Environmental Microbiology. 60: 1260-1268. DOI: 10.1128/Aem.60.4.1260-1268.1994  1
1992 Souza V, Nguyen TT, Hudson RR, Piñero D, Lenski RE. Hierarchical analysis of linkage disequilibrium in Rhizobium populations: evidence for sex? Proceedings of the National Academy of Sciences of the United States of America. 89: 8389-93. PMID 1518873 DOI: 10.1073/Pnas.89.17.8389  1
1987 Souza V, Puig M. Cytogenetic study of a group of workers exposed to thinner Mutation Research/Genetic Toxicology. 189: 357-362. PMID 3670339 DOI: 10.1016/0165-1218(87)90068-1  1
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