Tom Schmidt - Publications

University of Michigan, Ann Arbor, Ann Arbor, MI 

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JLM. Correction for Wertz et al., "Genomic and Physiological Characterization of the Verrucomicrobia Isolate Didymococcus colitermitum gen. nov., sp. nov., Reveals Microaerophily and Nitrogen Fixation Genes". Applied and Environmental Microbiology. 83. PMID 28625969 DOI: 10.1128/Aem.00987-17  0.48
2015 Carmody LA, Zhao J, Kalikin LM, LeBar W, Simon RH, Venkataraman A, Schmidt TM, Abdo Z, Schloss PD, LiPuma JJ. The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation. Microbiome. 3: 12. PMID 25834733 DOI: 10.1186/S40168-015-0074-9  0.8
2015 Bassis CM, Erb-Downward JR, Dickson RP, Freeman CM, Schmidt TM, Young VB, Beck JM, Curtis JL, Huffnagle GB. Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals. Mbio. 6: e00037. PMID 25736890 DOI: 10.1128/Mbio.00037-15  0.8
2015 Venkataraman A, Bassis CM, Beck JM, Young VB, Curtis JL, Huffnagle GB, Schmidt TM. Application of a neutral community model to assess structuring of the human lung microbiome. Mbio. 6. PMID 25604788 DOI: 10.1128/Mbio.02284-14  0.8
2015 Roller BR, Schmidt TM. The physiology and ecological implications of efficient growth. The Isme Journal. 9: 1481-7. PMID 25575305 DOI: 10.1038/ismej.2014.235  0.8
2015 Frenzel R, Höhne S, Hanzelmann C, Schmidt T, Winkler R, Drechsler A, Bittrich E, Eichhorn KJ, Uhlmann P. Tunable Hydrophilic or Amphiphilic Coatings: A "Reactive Layer Stack" Approach. Acs Applied Materials & Interfaces. 7: 12355-66. PMID 25568934 DOI: 10.1021/am507403t  0.8
2015 Stoddard SF, Smith BJ, Hein R, Roller BR, Schmidt TM. rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development. Nucleic Acids Research. 43: D593-8. PMID 25414355 DOI: 10.1093/nar/gku1201  0.8
2014 Schmidt TM, Kao JY. A little O2 may go a long way in structuring the GI microbiome. Gastroenterology. 147: 956-9. PMID 25265578 DOI: 10.1053/j.gastro.2014.09.025  0.8
2014 Werling BP, Dickson TL, Isaacs R, Gaines H, Gratton C, Gross KL, Liere H, Malmstrom CM, Meehan TD, Ruan L, Robertson BA, Robertson GP, Schmidt TM, Schrotenboer AC, Teal TK, et al. Perennial grasslands enhance biodiversity and multiple ecosystem services in bioenergy landscapes. Proceedings of the National Academy of Sciences of the United States of America. 111: 1652-7. PMID 24474791 DOI: 10.1073/Pnas.1309492111  0.8
2014 Blasiak LC, Schmidt AW, Andriamiarinoro H, Mulaw T, Rasolomampianina R, Applequist WL, Birkinshaw C, Rejo-Fienena F, Lowry PP, Schmidt TM, Hill RT. Bacterial communities in Malagasy soils with differing levels of disturbance affecting botanical diversity. Plos One. 9: e85097. PMID 24465484 DOI: 10.1371/Journal.Pone.0085097  0.8
2014 Robertson GP, Gross KL, Hamilton SK, Landis DA, Schmidt TM, Snapp SS, Swinton SM. Farming for ecosystem services: An ecological approach to production agriculture Bioscience. 64: 404-415. DOI: 10.1093/biosci/biu037  0.8
2013 Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, ... ... Schmidt TM, et al. Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis. Microbiome. 1: 9. PMID 24451366 DOI: 10.1186/2049-2618-1-9  0.8
2013 Vital M, Penton CR, Wang Q, Young VB, Antonopoulos DA, Sogin ML, Morrison HG, Raffals L, Chang EB, Huffnagle GB, Schmidt TM, Cole JR, Tiedje JM. A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community. Microbiome. 1: 8. PMID 24451334 DOI: 10.1186/2049-2618-1-8  0.8
2013 Morris A, Beck JM, Schloss PD, Campbell TB, Crothers K, Curtis JL, Flores SC, Fontenot AP, Ghedin E, Huang L, Jablonski K, Kleerup E, Lynch SV, Sodergren E, Twigg H, ... ... Schmidt TM, et al. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. American Journal of Respiratory and Critical Care Medicine. 187: 1067-75. PMID 23491408 DOI: 10.1164/Rccm.201210-1913Oc  0.8
2013 Bassis C, Young V, Schmidt T. Methods for characterizing microbial communities associated with the human body The Human Microbiota: How Microbial Communities Affect Health and Disease. 51-74. DOI: 10.1002/9781118409855.ch2  0.8
2012 Shade A, Peter H, Allison SD, Baho DL, Berga M, Bürgmann H, Huber DH, Langenheder S, Lennon JT, Martiny JB, Matulich KL, Schmidt TM, Handelsman J. Fundamentals of microbial community resistance and resilience. Frontiers in Microbiology. 3: 417. PMID 23267351 DOI: 10.3389/Fmicb.2012.00417  0.8
2012 Theis KR, Schmidt TM, Holekamp KE. Evidence for a bacterial mechanism for group-specific social odors among hyenas. Scientific Reports. 2: 615. PMID 22937224 DOI: 10.1038/Srep00615  0.8
2012 Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JL. Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes. Applied and Environmental Microbiology. 78: 1544-55. PMID 22194293 DOI: 10.1128/Aem.06466-11  0.8
2011 Young VB, Kahn SA, Schmidt TM, Chang EB. Studying the Enteric Microbiome in Inflammatory Bowel Diseases: Getting through the Growing Pains and Moving Forward. Frontiers in Microbiology. 2: 144. PMID 21772835 DOI: 10.3389/fmicb.2011.00144  0.8
2011 Jangid K, Williams MA, Franzluebbers AJ, Schmidt TM, Coleman DC, Whitman WB. Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties Soil Biology and Biochemistry. 43: 2184-2193. DOI: 10.1016/j.soilbio.2011.06.022  0.8
2010 Teal TK, Schmidt TM. Identifying and removing artificial replicates from 454 pyrosequencing data. Cold Spring Harbor Protocols. 2010: pdb.prot5409. PMID 20360363 DOI: 10.1101/Pdb.Prot5409  0.8
2009 Gomez-Alvarez V, Teal TK, Schmidt TM. Systematic artifacts in metagenomes from complex microbial communities. The Isme Journal. 3: 1314-7. PMID 19587772 DOI: 10.1038/Ismej.2009.72  0.8
2008 Jackson JH, Schmidt TM, Herring PA. A systems approach to model natural variation in reactive properties of bacterial ribosomes. Bmc Systems Biology. 2: 62. PMID 18620602 DOI: 10.1186/1752-0509-2-62  0.8
2008 Gil IS, Sheldon W, Schmidt T, Servilla M, Aguilar R, Gries C, Gray T, Field D, Cole J, Pan JY, Palanisamy G, Henshaw D, O'Brien M, Kinkel L, McMahon K, et al. Defining linkages between the GSC and NSF's LTER program: how the Ecological Metadata Language (EML) relates to GCDML and other outcomes. Omics : a Journal of Integrative Biology. 12: 151-6. PMID 18407745 DOI: 10.1089/Omi.2008.0015  0.8
2007 Hang D, Torng E, Ofria C, Schmidt TM. The effect of natural selection on the performance of maximum parsimony. Bmc Evolutionary Biology. 7: 94. PMID 17592626 DOI: 10.1186/1471-2148-7-94  0.8
2006 Schmidt TM. The maturing of microbial ecology. International Microbiology : the Official Journal of the Spanish Society For Microbiology. 9: 217-23. PMID 17061212  0.8
2003 Cole JR, Chai B, Marsh TL, Farris RJ, Wang Q, Kulam SA, Chandra S, McGarrell DM, Schmidt TM, Garrity GM, Tiedje JM. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Research. 31: 442-3. PMID 12520046 DOI: 10.1093/Nar/Gkg039  0.8
2003 Hang D, Ofria C, Schmidt TM, Torng E. The effect of natural selection on phylogeny reconstruction algorithms Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2723: 13-24.  0.8
2001 Klappenbach JA, Saxman PR, Cole JR, Schmidt TM. rrndb: the Ribosomal RNA Operon Copy Number Database. Nucleic Acids Research. 29: 181-4. PMID 11125085  0.8
2001 Maidak BL, Cole JR, Lilburn TG, Parker CT, Saxman PR, Farris RJ, Garrity GM, Olsen GJ, Schmidt TM, Tiedje JM. The RDP-II (Ribosomal Database Project). Nucleic Acids Research. 29: 173-4. PMID 11125082 DOI: 10.1093/Nar/29.1.173  0.8
2001 Buckley DH, Schmidt TM. Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil Fems Microbiology Ecology. 35: 105-112. DOI: 10.1016/S0168-6496(00)00122-7  0.8
2001 Buckley DH, Schmidt TM. The structure of microbial communities in soil and the lasting impact of cultivation Microbial Ecology. 42: 11-21.  0.8
2000 Maidak BL, Cole JR, Lilburn TG, Parker CT, Saxman PR, Stredwick JM, Garrity GM, Li B, Olsen GJ, Pramanik S, Schmidt TM, Tiedje JM. The RDP (Ribosomal Database Project) continues. Nucleic Acids Research. 28: 173-4. PMID 10592216 DOI: 10.1093/Nar/28.1.173  0.8
1999 Maidak BL, Cole JR, Parker CT, Garrity GM, Larsen N, Li B, Lilburn TG, McCaughey MJ, Olsen GJ, Overbeek R, Pramanik S, Schmidt TM, Tiedje JM, Woese CR. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Research. 27: 171-3. PMID 9847171 DOI: 10.1093/Nar/27.1.171  0.8
1998 Buckley DH, Graber JR, Schmidt TM. Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils Applied and Environmental Microbiology. 64: 4333-4339.  0.8
1998 Bratina BJO, Stevenson BS, Green WJ, Schmidt TM. Manganese reduction by microbes from oxic regions of the Lake Vanda (Antarctica) water column Applied and Environmental Microbiology. 64: 3791-3797.  0.8
1997 Larsen N, Overbeek R, Pramanik S, Schmidt TM, Selkov EE, Strunk O, Tiedje JM, Urbance JW. Towards microbial data integration Journal of Industrial Microbiology. 18: 68-72.  0.8
1995 Bailie MB, Jean PA, Lappin PB, Scozzaro MJ, Schmidt TM, Moulin FJ, Roth RA. Vitamin A or zymosan pretreatment attenuates alpha-naphthylisothiocyanate-induced liver injury. Toxicology and Applied Pharmacology. 134: 63-70. PMID 7676458 DOI: 10.1006/taap.1995.1169  0.8
1995 Bratina BJ, Viebahn M, Schmidt TM. Achieving specificity in nucleic acid hybridizations using nuclease S1 Methods in Molecular and Cellular Biology. 6: 107-115.  0.8
1994 Stevenson B, DiSpirito AA, Schmidt TM. Reduction of enzyme adsorption to polypropylene surfaces in the presence of a nonionic detergent. Biotechniques. 17: 1048-50. PMID 7873172  0.8
1994 Schmidt TM, Relman DA. Phylogenetic identification of uncultured pathogens using ribosomal RNA sequences. Methods in Enzymology. 235: 205-22. PMID 7520119 DOI: 10.1016/0076-6879(94)35142-2  0.8
1994 Schmidt TM. Fingerprinting bacterial genomes using ribosomal RNA genes and operons Methods in Molecular and Cellular Biology. 5: 3-12.  0.8
1993 Govindaswami M, Schmidt TM, White DC, Loper JC. Phylogenetic analysis of a bacterial aerobic degrader of azo dyes. Journal of Bacteriology. 175: 6062-6. PMID 8376354  0.8
1993 Wilson KH, Blitchington RB, Frothingham R, Wilson JAP, Steinman CR, Rumore P, Relman DA, MacDermott RP, Schmidt TM. Identification of the Whipple's disease bacillus [2] New England Journal of Medicine. 328: 62-63. PMID 7677948 DOI: 10.1056/NEJM199301073280113  0.8
1991 Venes D, Cockerell CJ, Tierno PM, Friedman-Kien AE, Kim KS, Wilson KH, Anderson B, Frothingham R, Relman DA, Loutit JS, Schmidt TM, Falkow S, Tompkins LS. The agent of bacillary angiomatosis [2] New England Journal of Medicine. 324: 1511-1513. PMID 2023613  0.8
1991 Schmidt TM, Pace B, Pace NR. Detection of DNA contamination in Taq polymerase. Biotechniques. 11: 176-7. PMID 1931012  0.8
1991 Birtles RJ, Harrison TG, Taylor AG, Relman DA, Schmidt TM, Cockerell CJ, Tierno PM, Friedman-Kien AE, Kim KS. The causative agent of bacillary angiomatosis [4] New England Journal of Medicine. 325: 1447-1448. PMID 1922261 DOI: 10.1056/Nejm199111143252014  0.8
1987 Schmidt TM, Arieli B, Cohen Y, Padan E, Strohl WR. Sulfur metabolism in Beggiatoa alba. Journal of Bacteriology. 169: 5466-72. PMID 3316186  0.8
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