Claus Wilke - Related publications

University of Texas, Austin, Texas 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Lee S, Choi CH, Yun MR, Kim DW, Kim SS, Choi YK, Choi YS. Evaluation of global evolutionary variations in the early stage of SARS-CoV-2 pandemic. Heliyon. e08170. PMID 34660919 DOI: 10.1016/j.heliyon.2021.e08170   
2021 Pyasi S, Gupta A, Hegde NR, Nayak D. Complete genome sequencing and assessment of mutation-associated protein dynamics of the first Indian bovine ephemeral fever virus (BEFV) isolate. The Veterinary Quarterly. 1-16. PMID 34663182 DOI: 10.1080/01652176.2021.1995909   
2021 Mou K, Mukhtar F, Khan MT, Darwish DB, Peng S, Muhammad S, Al-Sehemi AG, Wei DQ. Emerging Mutations in Nsp1 of SARS-CoV-2 and Their Effect on the Structural Stability. Pathogens (Basel, Switzerland). 10. PMID 34684233 DOI: 10.3390/pathogens10101285   
2021 Uddin MB, Sajib EH, Hoque SF, Bappy MNI, Elahi F, Ghosh A, Muhit S, Hassan MM, Hasan M, Chelliah R, Park SJ, Mony TJ, Oh DH, Ahmed SSU. Genomic diversity and molecular dynamics interaction on mutational variances among RB domains of SARS-CoV-2 interplay drug inactivation. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 105128. PMID 34752930 DOI: 10.1016/j.meegid.2021.105128   
2021 Dan L, Li Y, Chen S, Liu J, Wang Y, Li F, He X, Carey LB. A rapidly reversible mutation generates subclonal genetic diversity and unstable drug resistance. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34675074 DOI: 10.1073/pnas.2019060118   
2021 Zekri AN, Bahnasy AA, Hafez MM, Hassan ZK, Ahmed OS, Soliman HK, El-Sisi ER, Dine MHSE, Solimane MS, Latife LSA, Seadawy MG, Elsafty AS, Abouelhoda M. Characterization of the SARS-CoV-2 genomes in Egypt in first and second waves of infection. Scientific Reports. 11: 21632. PMID 34732835 DOI: 10.1038/s41598-021-99014-4   
2021 Ho EKH, Bellis ES, Calkins J, Adrion JR, Latta Iv LC, Schaack S. Engines of change: Transposable element mutation rates are high and variable within Daphnia magna. Plos Genetics. 17: e1009827. PMID 34723969 DOI: 10.1371/journal.pgen.1009827   
2021 Li X, Li Y, Sylvester SP, Zang M, El-Kassaby YA, Fang Y. Evolutionary patterns of nucleotide substitution rates in plastid genomes of . Ecology and Evolution. 11: 13401-13414. PMID 34646478 DOI: 10.1002/ece3.8063   
2021 Kuchinski KS, Nguyen J, Lee TD, Hickman R, Jassem AN, Hoang LMN, Prystajecky NA, Tyson JR. Mutations in emerging variant of concern lineages disrupt genomic sequencing of SARS-CoV-2 clinical specimens. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. PMID 34757201 DOI: 10.1016/j.ijid.2021.10.050   
2021 Ma L, Li H, Lan J, Hao X, Liu H, Wang X, Huang Y. Comprehensive analyses of bioinformatics applications in the fight against COVID-19 pandemic. Computational Biology and Chemistry. 95: 107599. PMID 34773807 DOI: 10.1016/j.compbiolchem.2021.107599   
2021 Gompert Z, Feder JL, Nosil P. Natural selection drives genome-wide evolution via chance genetic associations. Molecular Ecology. PMID 34704650 DOI: 10.1111/mec.16247   
2021 Fan LQ, Hu XY, Chen YY, Peng XL, Fu YH, Zheng YP, Yu JM, He JS. Biological Significance of the Genomic Variation and Structural Dynamics of SARS-CoV-2 B.1.617. Frontiers in Microbiology. 12: 750725. PMID 34691002 DOI: 10.3389/fmicb.2021.750725   
2021 Yang Y, Mao Y, Liu Y, Wang R, Lu H, Li H, Luo J, Wang M, Liao X, Ma H. GEDpm-cg: Genome Editing Automated Design Platform for Point Mutation Construction in . Frontiers in Bioengineering and Biotechnology. 9: 768289. PMID 34722482 DOI: 10.3389/fbioe.2021.768289   
2021 Rieux A, Campos P, Duvermy A, Scussel S, Martin D, Gaudeul M, Lefeuvre P, Becker N, Lett JM. Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history. Scientific Reports. 11: 21280. PMID 34711837 DOI: 10.1038/s41598-021-00518-w   
2021 Roy SW. Costly circRNAs, Effective Population Size, and the Origins of Molecular Complexity. Journal of Molecular Evolution. PMID 34698879 DOI: 10.1007/s00239-021-10033-1   
2021 He L, Sun S, Zhang Q, Bao X, Li PK. Alignment-free sequence comparison for virus genomes based on location correlation coefficient. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 105106. PMID 34626822 DOI: 10.1016/j.meegid.2021.105106   
2021 Jia S, Shi L. Efficient Change-Points Detection For Genomic Sequences Via Cumulative Segmented Regression. Bioinformatics (Oxford, England). PMID 34601562 DOI: 10.1093/bioinformatics/btab685   
2021 Chong LC, Lim WL, Ban KHK, Khan AM. An Alignment-Independent Approach for the Study of Viral Sequence Diversity at Any Given Rank of Taxonomy Lineage. Biology. 10. PMID 34571730 DOI: 10.3390/biology10090853   
2021 Lv W, Li T, Wang S, Wang H, Li X, Zhang S, Wang L, Xu Y, Wei W. The Application of the CRISPR/Cas9 System in the Treatment of Hepatitis B Liver Cancer. Technology in Cancer Research & Treatment. 20: 15330338211045206. PMID 34605326 DOI: 10.1177/15330338211045206   
2021 Peterson KA, Murray SA. Progress towards completing the mutant mouse null resource. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 34698892 DOI: 10.1007/s00335-021-09905-0   
2021 Tajima N, Kumagai T, Saito Y, Kameda T. Comparative analysis of the relationship between translation efficiency and sequence features of endogenous proteins in multiple organisms. Genomics. 113: 2675-2682. PMID 34058272 DOI: 10.1016/j.ygeno.2021.05.037   
2021 Morgenthaler AB, Fritts RK, Copley SD. Amplicon remodeling and genomic mutations drive population dynamics after segmental amplification. Molecular Biology and Evolution. PMID 34581806 DOI: 10.1093/molbev/msab289   
2021 Iacobucci I, Kimura S, Mullighan CG. Biologic and Therapeutic Implications of Genomic Alterations in Acute Lymphoblastic Leukemia. Journal of Clinical Medicine. 10. PMID 34501239 DOI: 10.3390/jcm10173792   
2021 James SA, Ong HS, Hari R, Khan AM. A systematic bioinformatics approach for large-scale identification and characterization of host-pathogen shared sequences. Bmc Genomics. 22: 700. PMID 34583643 DOI: 10.1186/s12864-021-07657-4   
2021 Wright BW, Molloy MP, Jaschke PR. Overlapping genes in natural and engineered genomes. Nature Reviews. Genetics. PMID 34611352 DOI: 10.1038/s41576-021-00417-w   
2021 Zhang Y, Yu J, Tan L, Wang X, Li R, Kim DY. Complete genetic dissection and cell type-specific replication of old world alphaviruses, getah virus (GETV) and sagiyama virus (SAGV). Journal of Microbiology (Seoul, Korea). PMID 34570337 DOI: 10.1007/s12275-021-1361-8   
2021 Fuchs S, Garrood WT, Beber A, Hammond A, Galizi R, Gribble M, Morselli G, Hui TJ, Willis K, Kranjc N, Burt A, Crisanti A, Nolan T. Resistance to a CRISPR-based gene drive at an evolutionarily conserved site is revealed by mimicking genotype fixation. Plos Genetics. 17: e1009740. PMID 34610011 DOI: 10.1371/journal.pgen.1009740   
2021 Liu Y, Demina TA, Roux S, Aiewsakun P, Kazlauskas D, Simmonds P, Prangishvili D, Oksanen HM, Krupovic M. Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes. Plos Biology. 19: e3001442. PMID 34752450 DOI: 10.1371/journal.pbio.3001442   
2021 Modlin SJ, Elghraoui A, Gunasekaran D, Zlotnicki AM, Dillon NA, Dhillon N, Kuo N, Robinhold C, Chan CK, Baughn AD, Valafar F. Structure-Aware Mycobacterium tuberculosis Functional Annotation Uncloaks Resistance, Metabolic, and Virulence Genes. Msystems. e0067321. PMID 34726489 DOI: 10.1128/mSystems.00673-21   
2021 Chatterjee N, Zhang X. CRISPR approach in environmental chemical screening focusing on population variability. The Journal of Toxicological Sciences. 46: 499-507. PMID 34719552 DOI: 10.2131/jts.46.499   
2021 Wang X, Zheng W, Zhou H, Tu Q, Tang YJ, Stewart AF, Zhang Y, Bian X. Improved dsDNA recombineering enables versatile multiplex genome engineering of kilobase-scale sequences in diverse bacteria. Nucleic Acids Research. PMID 34792175 DOI: 10.1093/nar/gkab1076   
2021 Noel EA, Weeks DP, Van Etten JL. Pursuit of chlorovirus genetic transformation and CRISPR/Cas9-mediated gene editing. Plos One. 16: e0252696. PMID 34673785 DOI: 10.1371/journal.pone.0252696   
2021 Choudhery S, Brown AJ, Akusobi C, Rubin EJ, Sassetti CM, Ioerger TR. Modeling Site-Specific Nucleotide Biases Affecting Himar1 Transposon Insertion Frequencies in TnSeq Data Sets. Msystems. e0087621. PMID 34665010 DOI: 10.1128/mSystems.00876-21   
2021 Jiang S, Du Q, Feng C, Ma L, Zhang Z. CompoDynamics: a comprehensive database for characterizing sequence composition dynamics. Nucleic Acids Research. PMID 34718745 DOI: 10.1093/nar/gkab979   
2021 Wang Z, Zhang F, Liang Y, Zheng K, Gu C, Zhang W, Liu Y, Zhang X, Shao H, Jiang Y, Guo C, He H, Wang H, Sung YY, Mok WJ, et al. Genome and Ecology of a Novel Podovirus, ZP6, Representing a New Viral Genus, . Microbiology Spectrum. e0046321. PMID 34643440 DOI: 10.1128/Spectrum.00463-21   
2021 Fouladi F, Young JB, Fodor AA. HashSeq: a Simple, Scalable, and Conservative Variant Caller for 16S rRNA Gene Data Sets. Msystems. e0069721. PMID 34751586 DOI: 10.1128/mSystems.00697-21   
2021 Cornforth MN, Bedford JS, Bailey SM. Destabilizing Effects of Ionizing Radiation on Chromosomes: Sizing up the Damage. Cytogenetic and Genome Research. 161: 328-351. PMID 34488218 DOI: 10.1159/000516523   
2021 White ND, Batz ZA, Braun EL, Braun MJ, Carleton KL, Kimball RT, Swaroop A. A novel exome probe set captures phototransduction genes across birds (Aves) enabling efficient analysis of vision evolution. Molecular Ecology Resources. PMID 34652059 DOI: 10.1111/1755-0998.13496   
2021 Whitmore L, Yetsko K, Farrell JA, Page-Karjian A, Daniel W, Shaver DJ, Frandsen HR, Walker JS, Crowder W, Bovery C, Rollinson Ramia D, Burkhalter B, Ryan E, Duffy DJ. Evolutionary Comparisons of Chelonid Alphaherpesvirus 5 (ChHV5) Genomes from Fibropapillomatosis-Afflicted Green (), Olive Ridley () and Kemp's Ridley () Sea Turtles. Animals : An Open Access Journal From Mdpi. 11. PMID 34573455 DOI: 10.3390/ani11092489   
2021 Lee SG, Na D, Park C. Comparability of reference-based and reference-free transcriptome analysis approaches at the gene expression level. Bmc Bioinformatics. 22: 310. PMID 34674628 DOI: 10.1186/s12859-021-04226-0   
2021 Saleem A, Ali Z, Yeh SD, Saeed W, Binat Imdad A, Akbar MF, Goodman RE, Naseem S. Genetic variability and evolutionary dynamics of atypical Papaya ringspot virus infecting Papaya. Plos One. 16: e0258298. PMID 34637470 DOI: 10.1371/journal.pone.0258298   
2021 Zhou S, Wu Y, Xie ZX, Jia B, Yuan YJ. Directed genome evolution driven by structural rearrangement techniques. Chemical Society Reviews. PMID 34651628 DOI: 10.1039/d1cs00722j   
2021 Si F, Jiang L, Yu R, Wei W, Li Z. Study on the Characteristic Codon Usage Pattern in Porcine Epidemic Diarrhea Virus Genomes and Its Host Adaptation Phenotype. Frontiers in Microbiology. 12: 738082. PMID 34733253 DOI: 10.3389/fmicb.2021.738082   
2021 Liu L, Yu H, Wang D. Genomic and biological characteristics of an alphabaculovirus isolated from Trabala vishnou gigantina. Virus Research. 198630. PMID 34788643 DOI: 10.1016/j.virusres.2021.198630   
2021 Young Chae G, Hong WJ, Jeong Jang M, Jung KH, Kim S. Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants. Nucleic Acids Research. PMID 34725701 DOI: 10.1093/nar/gkab932   
2021 Sun TW, Ku C. Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. Virus Evolution. 7: veab081. PMID 34754514 DOI: 10.1093/ve/veab081   
2021 Allen KN, Whitman CP. The Birth of Genomic Enzymology: Discovery of the Mechanistically Diverse Enolase Superfamily. Biochemistry. PMID 34664940 DOI: 10.1021/acs.biochem.1c00494   
2021 Zheng DQ, Wang YT, Zhu YX, Sheng H, Li KJ, Sui Y, Zhang K. Uncovering bleomycin-induced genomic alterations and underlying mechanisms in yeast. Applied and Environmental Microbiology. AEM0170321. PMID 34731050 DOI: 10.1128/AEM.01703-21   
2021 Janko K, Bartoš O, Kočí J, Roslein J, Drdová EJ, Kotusz J, Eisner J, Mokrejš M, Štefková-Kašparová E. Genome fractionation and loss of heterozygosity in hybrids and polyploids: mechanisms, consequences for selection, and link to gene function. Molecular Biology and Evolution. PMID 34410426 DOI: 10.1093/molbev/msab249   
2021 Ren Z, Wang Z, Gu D, Ma H, Zhu Y, Cai M, Zhang J. Genome Instability and Long Noncoding RNA Reveal Biomarkers for Immunotherapy and Prognosis and Novel Competing Endogenous RNA Mechanism in Colon Adenocarcinoma. Frontiers in Cell and Developmental Biology. 9: 740455. PMID 34746134 DOI: 10.3389/fcell.2021.740455