Steven E. Finkel, PhD - Publications

Affiliations: 
University of Southern California, Los Angeles, CA, United States 

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Sebastian H, Finkel SE. Absence of Ribosome Modulation Factor Alters Growth and Competitive Fitness of Escherichia coli. Microbiology Spectrum. 10: e0223921. PMID 35377189 DOI: 10.1128/spectrum.02239-21  0.345
2021 Osborne MG, Geiger CJ, Corzett CH, Kram KE, Finkel SE. Removal of Toxic Volatile Compounds in Batch Culture Prolongs Stationary Phase and Delays Death of Escherichia coli. Applied and Environmental Microbiology. 87: e0186021. PMID 34613759 DOI: 10.1128/AEM.01860-21  0.775
2021 Ratib NR, Seidl F, Ehrenreich IM, Finkel SE. Evolution in Long-Term Stationary-Phase Batch Culture: Emergence of Divergent Escherichia coli Lineages over 1,200 Days. Mbio. 12. PMID 33500336 DOI: 10.1128/mBio.03337-20  0.714
2019 Robador A, Amend JP, Finkel SE. Nanocalorimetry reveals growth dynamics of cells undergoing adaptive evolution during long-term stationary phase. Applied and Environmental Microbiology. PMID 31152016 DOI: 10.1128/Aem.00968-19  0.434
2018 Ferraro CM, Finkel SE. Physiological, Genetic, and Transcriptomic Analysis of Alcohol-Induced Delay of Bacterial Death in . Applied and Environmental Microbiology. PMID 30389772 DOI: 10.1128/Aem.02113-18  0.331
2018 Westphal LL, Lau J, Negro Z, Moreno IJ, Mohammed WI, Lee H, Tang H, Finkel SE, Kram KE. Adaptation of Escherichia coli to long-term batch culture in various rich media. Research in Microbiology. PMID 29454026 DOI: 10.1016/J.Resmic.2018.01.003  0.403
2018 Robador A, LaRowe DE, Finkel SE, Amend JP, Nealson KH. Changes in Microbial Energy Metabolism Measured by Nanocalorimetry during Growth Phase Transitions. Frontiers in Microbiology. 9: 109. PMID 29449836 DOI: 10.3389/Fmicb.2018.00109  0.349
2017 Kram KE, Geiger C, Ismail WM, Lee H, Tang H, Foster PL, Finkel SE. Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution. Msystems. 2. PMID 28289732 DOI: 10.1128/mSystems.00192-16  0.301
2015 Kram KE, Finkel SE. Rich Medium Composition Affects Escherichia coli Survival, Glycation, and Mutation Frequency during Long-Term Batch Culture. Applied and Environmental Microbiology. 81: 4442-50. PMID 25911475 DOI: 10.1128/Aem.00722-15  0.432
2015 Calendar R, Lindqvist BH, Finkel SE, Haggård-Ljungqvist E. Obituaries: Anne M. Dranginis, Giuseppe Bertani Microbe Magazine. 10: 298-299. DOI: 10.1128/Microbe.10.298.2  0.514
2014 Kram KE, Finkel SE. Culture volume and vessel affect long-term survival, mutation frequency, and oxidative stress of Escherichia coli. Applied and Environmental Microbiology. 80: 1732-8. PMID 24375138 DOI: 10.1128/Aem.03150-13  0.435
2013 Riedel TE, Berelson WM, Nealson KH, Finkel SE. Oxygen consumption rates of bacteria under nutrient-limited conditions. Applied and Environmental Microbiology. 79: 4921-31. PMID 23770901 DOI: 10.1128/Aem.00756-13  0.426
2013 Corzett CH, Goodman MF, Finkel SE. Competitive fitness during feast and famine: how SOS DNA polymerases influence physiology and evolution in Escherichia coli. Genetics. 194: 409-20. PMID 23589461 DOI: 10.1534/Genetics.113.151837  0.778
2011 Yamanaka K, Minko IG, Finkel SE, Goodman MF, Lloyd RS. Role of high-fidelity Escherichia coli DNA polymerase I in replication bypass of a deoxyadenosine DNA-peptide cross-link. Journal of Bacteriology. 193: 3815-21. PMID 21622737 DOI: 10.1128/Jb.01550-10  0.357
2011 Biffinger JC, Fitzgerald LA, Ray R, Little BJ, Lizewski SE, Petersen ER, Ringeisen BR, Sanders WC, Sheehan PE, Pietron JJ, Baldwin JW, Nadeau LJ, Johnson GR, Ribbens M, Finkel SE, et al. The utility of Shewanella japonica for microbial fuel cells. Bioresource Technology. 102: 290-7. PMID 20663660 DOI: 10.1016/J.Biortech.2010.06.078  0.733
2011 Nealson KH, Finkel SE. Electron flow and biofilms Mrs Bulletin. 36: 380-384. DOI: 10.1557/Mrs.2011.69  0.339
2010 Pepper ED, Farrell MJ, Nord G, Finkel SE. Antiglycation effects of carnosine and other compounds on the long-term survival of Escherichia coli. Applied and Environmental Microbiology. 76: 7925-30. PMID 20952637 DOI: 10.1128/Aem.01369-10  0.695
2010 Gonidakis S, Finkel SE, Longo VD. Genome-wide screen identifies Escherichia coli TCA-cycle-related mutants with extended chronological lifespan dependent on acetate metabolism and the hypoxia-inducible transcription factor ArcA. Aging Cell. 9: 868-81. PMID 20707865 DOI: 10.1111/J.1474-9726.2010.00618.X  0.4
2010 Gonidakis S, Finkel SE, Longo VD. E. coli hypoxia-inducible factor ArcA mediates lifespan extension in a lipoic acid synthase mutant by suppressing acetyl-CoA synthetase. Biological Chemistry. 391: 1139-47. PMID 20707605 DOI: 10.1515/Bc.2010.120  0.364
2009 Palchevskiy V, Finkel SE. A role for single-stranded exonucleases in the use of DNA as a nutrient. Journal of Bacteriology. 191: 3712-6. PMID 19329645 DOI: 10.1128/Jb.01678-08  0.755
2009 Kraigsley AM, Finkel SE. Adaptive evolution in single species bacterial biofilms. Fems Microbiology Letters. 293: 135-40. PMID 19239496 DOI: 10.1111/J.1574-6968.2009.01526.X  0.769
2009 Biffinger JC, Ray R, Little BJ, Fitzgerald LA, Ribbens M, Finkel SE, Ringeisen BR. Simultaneous analysis of physiological and electrical output changes in an operating microbial fuel cell with Shewanella oneidensis. Biotechnology and Bioengineering. 103: 524-31. PMID 19189395 DOI: 10.1002/Bit.22266  0.743
2009 Biffinger J, Ribbens M, Ringeisen B, Pietron J, Finkel S, Nealson K. Characterization of electrochemically active bacteria utilizing a high-throughput voltage-based screening assay. Biotechnology and Bioengineering. 102: 436-44. PMID 18767193 DOI: 10.1002/Bit.22072  0.736
2008 Kumari A, Minko IG, Harbut MB, Finkel SE, Goodman MF, Lloyd RS. Replication bypass of interstrand cross-link intermediates by Escherichia coli DNA polymerase IV. The Journal of Biological Chemistry. 283: 27433-7. PMID 18697749 DOI: 10.1074/Jbc.M801237200  0.359
2007 Ren C, Webster P, Finkel SE, Tower J. Increased internal and external bacterial load during Drosophila aging without life-span trade-off. Cell Metabolism. 6: 144-52. PMID 17681150 DOI: 10.1016/J.Cmet.2007.06.006  0.351
2007 Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S. Using expression arrays for copy number detection: an example from E. coli. Bmc Bioinformatics. 8: 203. PMID 17570850 DOI: 10.1186/1471-2105-8-203  0.311
2006 Pepper ED, Farrell MJ, Finkel SE. Role of penicillin-binding protein 1b in competitive stationary-phase survival of Escherichia coli. Fems Microbiology Letters. 263: 61-7. PMID 16958852 DOI: 10.1111/J.1574-6968.2006.00418.X  0.696
2006 Palchevskiy V, Finkel SE. Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient. Journal of Bacteriology. 188: 3902-10. PMID 16707682 DOI: 10.1128/Jb.01974-05  0.742
2006 Finkel SE. Long-term survival during stationary phase: evolution and the GASP phenotype. Nature Reviews. Microbiology. 4: 113-20. PMID 16415927 DOI: 10.1038/Nrmicro1340  0.414
2004 Nair S, Finkel SE. Dps protects cells against multiple stresses during stationary phase. Journal of Bacteriology. 186: 4192-8. PMID 15205421 DOI: 10.1128/Jb.186.13.4192-4198.2004  0.591
2003 Farrell MJ, Finkel SE. The growth advantage in stationary-phase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environment. Journal of Bacteriology. 185: 7044-52. PMID 14645263 DOI: 10.1128/Jb.185.24.7044-7052.2003  0.402
2002 Yeiser B, Pepper ED, Goodman MF, Finkel SE. SOS-induced DNA polymerases enhance long-term survival and evolutionary fitness. Proceedings of the National Academy of Sciences of the United States of America. 99: 8737-41. PMID 12060704 DOI: 10.1073/Pnas.092269199  0.722
2001 Finkel SE, Kolter R. DNA as a nutrient: novel role for bacterial competence gene homologs. Journal of Bacteriology. 183: 6288-93. PMID 11591672 DOI: 10.1128/Jb.183.21.6288-6293.2001  0.61
2001 Frenkiel-Krispin D, Levin-Zaidman S, Shimoni E, Wolf SG, Wachtel EJ, Arad T, Finkel SE, Kolter R, Minsky A. Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection. The Embo Journal. 20: 1184-91. PMID 11230141 DOI: 10.1093/Emboj/20.5.1184  0.621
1999 Membrillo-Hernández J, Kwon O, De Wulf P, Finkel SE, Lin EC. Regulation of adhE (encoding ethanol oxidoreductase) by the Fis protein in Escherichia coli. Journal of Bacteriology. 181: 7390-3. PMID 10572146 DOI: 10.1128/Jb.181.23.7390-7393.1999  0.334
1999 Wolf SG, Frenkiel D, Arad T, Finkel SE, Kolter R, Minsky A. DNA protection by stress-induced biocrystallization. Nature. 400: 83-5. PMID 10403254 DOI: 10.1038/21918  0.58
1999 Finkel SE, Kolter R. Evolution of microbial diversity during prolonged starvation. Proceedings of the National Academy of Sciences of the United States of America. 96: 4023-7. PMID 10097156 DOI: 10.1073/Pnas.96.7.4023  0.589
1998 Grant RA, Filman DJ, Finkel SE, Kolter R, Hogle JM. The crystal structure of Dps, a ferritin homolog that binds and protects DNA. Nature Structural Biology. 5: 294-303. PMID 9546221 DOI: 10.1038/Nsb0498-294  0.544
1996 Pan CQ, Finkel SE, Cramton SE, Feng JA, Sigman DS, Johnson RC. Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts. Journal of Molecular Biology. 264: 675-95. PMID 8980678 DOI: 10.1006/jmbi.1996.0669  0.455
1994 Pan CQ, Feng JA, Finkel SE, Landgraf R, Sigman D, Johnson RC. Structure of the Escherichia coli Fis-DNA complex probed by protein conjugated with 1,10-phenanthroline copper(I) complex. Proceedings of the National Academy of Sciences of the United States of America. 91: 1721-5. PMID 8127871 DOI: 10.1073/Pnas.91.5.1721  0.452
1994 Yuan HS, Wang SS, Yang WZ, Finkel SE, Johnson RC. The structure of Fis mutant Pro61Ala illustrates that the kink within the long alpha-helix is not due to the presence of the proline residue. The Journal of Biological Chemistry. 269: 28947-54. PMID 7961857  0.385
1993 Finkel SE, Johnson RC. The Fis protein: it's not just for DNA inversion anymore. Molecular Microbiology. 7: 1023. PMID 8483413  0.421
1993 Gosink KK, Ross W, Leirmo S, Osuna R, Finkel SE, Johnson RC, Gourse RL. DNA binding and bending are necessary but not sufficient for Fis-dependent activation of rrnB P1. Journal of Bacteriology. 175: 1580-9. PMID 8449867 DOI: 10.1128/Jb.175.6.1580-1589.1993  0.437
1993 Yuan HS, Finkel SE, Johnson RC. The crystal structure of Fis mutant Pro61-Ala: the influence of proline residues on bending of the α-helix Acta Crystallographica Section a Foundations of Crystallography. 49: c62-c62. DOI: 10.1107/S0108767378098219  0.35
1992 Finkel SE, Johnson RC. The Fis protein: it's not just for DNA inversion anymore. Molecular Microbiology. 6: 3257-65. PMID 1484481 DOI: 10.1111/j.1365-2958.1992.tb02193.x  0.467
1991 Yuan HS, Finkel SE, Feng JA, Kaczor-Grzeskowiak M, Johnson RC, Dickerson RE. The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding. Proceedings of the National Academy of Sciences of the United States of America. 88: 9558-62. PMID 1946369 DOI: 10.1073/Pnas.88.21.9558  0.454
1991 Osuna R, Finkel SE, Johnson RC. Identification of two functional regions in Fis: the N-terminus is required to promote Hin-mediated DNA inversion but not lambda excision. The Embo Journal. 10: 1593-603. PMID 1851089 DOI: 10.1002/J.1460-2075.1991.Tb07680.X  0.458
1990 Ghisotti D, Finkel S, Halling C, Dehò G, Sironi G, Calendar R. Nonessential region of bacteriophage P4: DNA sequence, transcription, gene products, and functions. Journal of Virology. 64: 24-36. PMID 2403440  0.544
1990 Halling C, Calendar R, Christie GE, Dale EC, Dehò G, Finkel S, Flensburg J, Ghisotti D, Kahn ML, Lane KB. DNA sequence of satellite bacteriophage P4. Nucleic Acids Research. 18: 1649. PMID 2183201 DOI: 10.1093/Nar/18.6.1649  0.542
1986 Finkel S, Halling C, Calendar R. Selection of lambda Spi- transducing phages using the P2 old gene cloned onto a plasmid. Gene. 46: 65-9. PMID 3026928 DOI: 10.1016/0378-1119(86)90167-8  0.571
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