Jana M. U'Ren, Ph.D. - Publications

2011 Plant Science University of Arizona, Tucson, AZ 
Ecology Biology, Botany Biology, Plant Pathology Agriculture

35/48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 U'Ren JM, Zimmerman NB. Oaks provide new perspective on seed microbiome assembly. The New Phytologist. 230: 1293-1295. PMID 33855719 DOI: 10.1111/nph.17305  1
2021 Oita S, Ibáñez A, Lutzoni F, Miadlikowska J, Geml J, Lewis LA, Hom EFY, Carbone I, U'Ren JM, Arnold AE. Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale. Communications Biology. 4: 313. PMID 33750915 DOI: 10.1038/s42003-021-01826-7  0.96
2021 Oita S, Carey J, Kline I, Ibáñez A, Yang N, Hom EFY, Carbone I, U'Ren JM, Arnold AE. Methodological Approaches Frame Insights into Endophyte Richness and Community Composition. Microbial Ecology. PMID 33410938 DOI: 10.1007/s00248-020-01654-y  0.96
2019 U'Ren JM, Lutzoni F, Miadlikowska J, Zimmerman NB, Carbone I, May G, Arnold AE. Host availability drives distributions of fungal endophytes in the imperilled boreal realm. Nature Ecology & Evolution. PMID 31548643 DOI: 10.1038/S41559-019-0975-2  1
2019 Carbone I, White JB, Miadlikowska J, Arnold AE, Miller MA, Magain N, U'Ren JM, Lutzoni F. T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees. Microbiology Resource Announcements. 8. PMID 31320426 DOI: 10.1128/MRA.00328-19  0.96
2019 Taylor MJ, Mannan RW, U'Ren JM, Garber NP, Gallery RE, Arnold AE. Age-related variation in the oral microbiome of urban Cooper's hawks (Accipiter cooperii). Bmc Microbiology. 19: 47. PMID 30791867 DOI: 10.1186/S12866-019-1413-Y  0.96
2018 Huang YL, Bowman EA, Massimo NC, Garber NP, U'Ren JM, Sandberg DC, Arnold AE. Using collections data to infer biogeographic, environmental, and host structure in communities of endophytic fungi. Mycologia. 110: 47-62. PMID 29863996 DOI: 10.1080/00275514.2018.1442078  0.96
2018 Padumadasa C, Xu YM, Wijeratne EMK, Espinosa-Artiles P, U'Ren JM, Arnold AE, Gunatilaka AAL. Cytotoxic and Noncytotoxic Metabolites from Teratosphaeria sp. FL2137, a Fungus Associated with Pinus clausa. Journal of Natural Products. PMID 29373790 DOI: 10.1021/Acs.Jnatprod.7B00838  0.96
2017 Sarmiento C, Zalamea PC, Dalling JW, Davis AS, Stump SM, U'Ren JM, Arnold AE. Soilborne fungi have host affinity and host-specific effects on seed germination and survival in a lowland tropical forest. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973927 DOI: 10.1073/Pnas.1706324114  0.96
2017 Shaffer JP, U'Ren JM, Gallery RE, Baltrus DA, Arnold AE. An Endohyphal Bacterium (Chitinophaga, Bacteroidetes) Alters Carbon Source Use by Fusarium keratoplasticum (F. solani Species Complex, Nectriaceae). Frontiers in Microbiology. 8: 350. PMID 28382021 DOI: 10.3389/Fmicb.2017.00350  0.96
2016 Carbone I, White JB, Miadlikowska J, Elizabeth Arnold A, Miller MA, Kauff F, U'Ren JM, May G, Lutzoni F. T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads, and metadata visualization: an example with the Pezizomycotina tree of life. Bioinformatics (Oxford, England). PMID 28003260 DOI: 10.1093/Bioinformatics/Btw808  0.32
2016 U'Ren JM, Arnold AE. Diversity, taxonomic composition, and functional aspects of fungal communities in living, senesced, and fallen leaves at five sites across North America. Peerj. 4: e2768. PMID 27994976 DOI: 10.7717/Peerj.2768  0.96
2016 Chagnon PL, U'Ren JM, Miadlikowska J, Lutzoni F, Arnold AE. Erratum to: Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale. Oecologia. PMID 27106850 DOI: 10.1007/S00442-016-3589-2  0.96
2016 U'Ren JM, Miadlikowska J, Zimmerman NB, Lutzoni F, Stajich JE, Elizabeth Arnold A. Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota). Molecular Phylogenetics and Evolution. PMID 26903035 DOI: 10.1016/J.Ympev.2016.02.010  0.32
2016 Wijeratne EM, Gunaherath GM, Chapla VM, Tillotson J, de la Cruz F, Kang M, U Ren JM, Araujo AR, Arnold AE, Chapman E, Gunatilaka AA. Oxaspirol B with p97 Inhibitory Activity and Other Oxaspirols from Lecythophora sp. FL1375 and FL1031, Endolichenic Fungi Inhabiting Parmotrema tinctorum and Cladonia evansii. Journal of Natural Products. PMID 26812276 DOI: 10.1021/Acs.Jnatprod.5B00986  0.32
2015 Xu YM, Bashyal BP, Liu MX, Espinosa-Artiles P, U'Ren JM, Arnold AE, Gunatilaka AA. Cytotoxic Cytochalasins and Other Metabolites from Xylariaceae sp. FL0390, a Fungal Endophyte of Spanish Moss. Natural Product Communications. 10: 1655-8. PMID 26669096 DOI: 10.1177/1934578X1501001007  0.96
2015 Xu YM, Mafezoli J, Oliveira MC, U'Ren JM, Arnold AE, Gunatilaka AA. Anteaglonialides A-F and Palmarumycins CE1-CE3 from Anteaglonium sp. FL0768, a Fungal Endophyte of the Spikemoss Selaginella arenicola. Journal of Natural Products. PMID 26539727 DOI: 10.1021/Acs.Jnatprod.5B00717  0.32
2015 Huang YL, Devan MM, U'Ren JM, Furr SH, Arnold AE. Pervasive Effects of Wildfire on Foliar Endophyte Communities in Montane Forest Trees. Microbial Ecology. PMID 26370111 DOI: 10.1007/S00248-015-0664-X  0.48
2015 Wei H, Xu YM, Espinosa-Artiles P, Liu MX, Luo JG, U'Ren JM, Elizabeth Arnold A, Leslie Gunatilaka AA. Sesquiterpenes and other constituents of Xylaria sp. NC1214, a fungal endophyte of the moss Hypnum sp. Phytochemistry. PMID 26324074 DOI: 10.1016/J.Phytochem.2015.08.010  0.44
2015 Chen KH, Miadlikowska J, Molnár K, Arnold AE, U'Ren JM, Gaya E, Gueidan C, Lutzoni F. Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales. Molecular Phylogenetics and Evolution. 85: 117-30. PMID 25701073 DOI: 10.1016/J.Ympev.2015.01.008  0.32
2014 Oono R, Lutzoni F, Arnold AE, Kaye L, U'Ren JM, May G, Carbone I. Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species. American Journal of Botany. 101: 1362-74. PMID 25156984 DOI: 10.3732/Ajb.1400141  0.32
2014 U'Ren JM, Riddle JM, Monacell JT, Carbone I, Miadlikowska J, Arnold AE. Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi. Molecular Ecology Resources. 14: 1032-48. PMID 24628864 DOI: 10.1111/1755-0998.12252  0.32
2012 U'Ren JM, Lutzoni F, Miadlikowska J, Laetsch AD, Arnold AE. Host and geographic structure of endophytic and endolichenic fungi at a continental scale. American Journal of Botany. 99: 898-914. PMID 22539507 DOI: 10.3732/Ajb.1100459  0.32
2012 Wijeratne EM, Bashyal BP, Liu MX, Rocha DD, Gunaherath GM, U'Ren JM, Gunatilaka MK, Arnold AE, Whitesell L, Gunatilaka AA. Geopyxins A-E, ent-kaurane diterpenoids from endolichenic fungal strains Geopyxis aff. majalis and Geopyxis sp. AZ0066: structure-activity relationships of geopyxins and their analogues. Journal of Natural Products. 75: 361-9. PMID 22264149 DOI: 10.1021/Np200769Q  0.32
2011 Wang XN, Bashyal BP, Wijeratne EM, U'Ren JM, Liu MX, Gunatilaka MK, Arnold AE, Gunatilaka AA. Smardaesidins A-G, isopimarane and 20-nor-isopimarane diterpenoids from Smardaea sp., a fungal endophyte of the moss Ceratodon purpureus. Journal of Natural Products. 74: 2052-61. PMID 21999655 DOI: 10.1021/Np2000864  0.32
2010 U'ren JM, Lutzoni F, Miadlikowska J, Arnold AE. Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens. Microbial Ecology. 60: 340-53. PMID 20625714 DOI: 10.1007/S00248-010-9698-2  0.32
2009 Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, et al. Bacillus anthracis in China and its relationship to worldwide lineages. Bmc Microbiology. 9: 71. PMID 19368722 DOI: 10.1186/1471-2180-9-71  0.32
2009 U'ren JM, Dalling JW, Gallery RE, Maddison DR, Davis EC, Gibson CM, Arnold AE. Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: a case study for analysing fungal environmental samples. Mycological Research. 113: 432-49. PMID 19103288 DOI: 10.1016/J.Mycres.2008.11.015  0.32
2007 Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Zinser G, Farlow J, et al. Global genetic population structure of Bacillus anthracis. Plos One. 2: e461. PMID 17520020 DOI: 10.1371/Journal.Pone.0000461  0.32
2007 U'Ren JM, Schupp JM, Pearson T, Hornstra H, Friedman CL, Smith KL, Daugherty RR, Rhoton SD, Leadem B, Georgia S, Cardon M, Huynh LY, DeShazer D, Harvey SP, Robison R, et al. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. Bmc Microbiology. 7: 23. PMID 17397553 DOI: 10.1186/1471-2180-7-23  0.32
2007 Pearson T, U'Ren JM, Schupp JM, Allan GJ, Foster PG, Mayo MJ, Gal D, Choy JL, Daugherty RL, Kachur S, Friedman CL, Leadem B, Georgia S, Hornstra H, Vogler AJ, et al. VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 416-23. PMID 17258514 DOI: 10.1016/J.Meegid.2006.12.002  0.32
2007 Van Ert MN, Easterday WR, Simonson TS, U'Ren JM, Pearson T, Kenefic LJ, Busch JD, Huynh LY, Dukerich M, Trim CB, Beaudry J, Welty-Bernard A, Read T, Fraser CM, Ravel J, et al. Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. Journal of Clinical Microbiology. 45: 47-53. PMID 17093023 DOI: 10.1128/Jcm.01233-06  0.32
2005 U'Ren JM, Van Ert MN, Schupp JM, Easterday WR, Simonson TS, Okinaka RT, Pearson T, Keim P. Use of a real-time PCR TaqMan assay for rapid identification and differentiation of Burkholderia pseudomallei and Burkholderia mallei. Journal of Clinical Microbiology. 43: 5771-4. PMID 16272516 DOI: 10.1128/Jcm.43.11.5771-5774.2005  0.32
2004 Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 101: 13536-41. PMID 15347815 DOI: 10.1073/Pnas.0403844101  0.32
2004 Tenaillon MI, U'Ren J, Tenaillon O, Gaut BS. Selection versus demography: a multilocus investigation of the domestication process in maize. Molecular Biology and Evolution. 21: 1214-25. PMID 15014173 DOI: 10.1093/Molbev/Msh102  0.32
Low-probability matches
2015 Chagnon PL, U'Ren JM, Miadlikowska J, Lutzoni F, Elizabeth Arnold A. Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale. Oecologia. PMID 26420599 DOI: 10.1007/s00442-015-3457-5  0.28
2015 Massimo NC, Nandi Devan MM, Arendt KR, Wilch MH, Riddle JM, Furr SH, Steen C, U'Ren JM, Sandberg DC, Arnold AE. Fungal endophytes in aboveground tissues of desert plants: infrequent in culture, but highly diverse and distinctive symbionts. Microbial Ecology. 70: 61-76. PMID 25645243 DOI: 10.1007/S00248-014-0563-6  0.16
2020 Selbmann L, Benkő Z, Coleine C, de Hoog S, Donati C, Druzhinina I, Emri T, Ettinger CL, Gladfelter AS, Gorbushina AA, Grigoriev IV, Grube M, Gunde-Cimerman N, Karányi ZÁ, Kocsis B, et al. Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel, Switzerland). 10. PMID 33352712 DOI: 10.3390/life10120362  0.12
2014 Luo JG, Wang XB, Xu YM, U'Ren JM, Arnold AE, Kong LY, Gunatilaka AA. Delitschiapyrone A, a pyrone-naphthalenone adduct bearing a new pentacyclic ring system from the leaf-associated fungus Delitschia sp. FL1581. Organic Letters. 16: 5944-7. PMID 25365379 DOI: 10.1021/Ol502973C  0.04
2020 Apprill A, Miller CA, Van Cise AM, U'Ren JM, Leslie MS, Weber L, Baird RW, Robbins J, Landry S, Bogomolni A, Waring G. Marine mammal skin microbiotas are influenced by host phylogeny. Royal Society Open Science. 7: 192046. PMID 32537203 DOI: 10.1098/Rsos.192046  0.01
2019 Dietzel K, Valle D, Fierer N, U'Ren JM, Barberán A. Geographical Distribution of Fungal Plant Pathogens in Dust Across the United States Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00304  0.01
2019 Harrington AH, Olmo-Ruiz Md, U’Ren JM, Garcia K, Pignatta D, Wespe N, Sandberg DC, Huang Y, Hoffman MT, Arnold AE. Coniochaeta endophytica sp. nov., a foliar endophyte associated with healthy photosynthetic tissue of Platycladus orientalis (Cupressaceae) Plant and Fungal Systematics. 64: 65-79. DOI: 10.2478/pfs-2019-0008  0.01
2017 Hurwitz BL, Ponsero A, Thornton J, U'Ren JM. Phage Hunters: computational strategies for finding phages in large-scale 'omics datasets. Virus Research. PMID 29100906 DOI: 10.1016/j.virusres.2017.10.019  0.01
2016 Hurwitz BL, U'Ren JM. Viral metabolic reprogramming in marine ecosystems. Current Opinion in Microbiology. 31: 161-8. PMID 27088500 DOI: 10.1016/j.mib.2016.04.002  0.01
2016 Hurwitz BL, U'Ren JM, Youens-Clark K. Computational prospecting the great viral unknown. Fems Microbiology Letters. 363. PMID 27030726 DOI: 10.1093/Femsle/Fnw077  0.01
2015 U'Ren JM, Wisecaver JH, Paek AL, Dunn BL, Hurwitz BL. Draft Genome Sequence of the Ale-Fermenting Saccharomyces cerevisiae Strain GSY2239. Genome Announcements. 3. PMID 26205854 DOI: 10.1128/Genomea.00776-15  0.01
2009 U'Ren J. Is the hope for a cellulosic biofuel a lot of rot? Environmental Microbiology. 11: 2475-6. PMID 19807711 DOI: 10.1111/J.1462-2920.2009.02068.X  0.01
2007 U'ren JM, Hornstra H, Pearson T, Schupp JM, Leadem B, Georgia S, Sermswan RW, Keim P. Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in northeast Thailand. Applied and Environmental Microbiology. 73: 6678-81. PMID 17720819 DOI: 10.1128/Aem.00986-07  0.01
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