Reid Johnson - Publications

University of California, Los Angeles, Los Angeles, CA 

142 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kamagata K, Itoh Y, Tan C, Mano E, Wu Y, Mandali S, Takada S, Johnson RC. Testing mechanisms of DNA sliding by architectural DNA-binding proteins: dynamics of single wild-type and mutant protein molecules in vitro and in vivo. Nucleic Acids Research. PMID 34352099 DOI: 10.1093/nar/gkab658  0.531
2021 Mandali S, Johnson RC. Control of the serine integrase reaction: roles of the coiled-coil and helix E regions in DNA site synapsis and recombination. Journal of Bacteriology. JB0070320. PMID 34060907 DOI: 10.1128/JB.00703-20  0.537
2020 Kamagata K, Ouchi K, Tan C, Mano E, Mandali S, Wu Y, Takada S, Takahashi S, Johnson RC. The HMGB chromatin protein Nhp6A can bypass obstacles when traveling on DNA. Nucleic Acids Research. PMID 32997109 DOI: 10.1093/nar/gkaa799  0.501
2019 Hancock SP, Cascio D, Johnson RC. Cooperative DNA binding by proteins through DNA shape complementarity. Nucleic Acids Research. 47: 8874-8887. PMID 31616952 DOI: 10.1093/Nar/Gkz642  0.595
2018 Chen W, Mandali S, Hancock SP, Kumar P, Collazo M, Cascio D, Johnson RC. Multiple serine transposase dimers assemble the transposon-end synaptic complex during IS-family transposition. Elife. 7. PMID 30289389 DOI: 10.7554/eLife.39611  0.41
2018 Kamagata K, Eriko M, Ouchi K, Kanbayashi S, Johnson RC. High free-energy barrier of 1D diffusion along DNA by architectural DNA-binding proteins. Journal of Molecular Biology. PMID 29307468 DOI: 10.1016/j.jmb.2018.01.001  0.511
2017 Kamar RI, Banigan EJ, Erbas A, Giuntoli RD, Olvera de la Cruz M, Johnson RC, Marko JF. Facilitated dissociation of transcription factors from single DNA binding sites. Proceedings of the National Academy of Sciences of the United States of America. PMID 28364020 DOI: 10.1073/Pnas.1701884114  0.455
2017 Mandali S, Gupta K, Dawson AR, Van Duyne GD, Johnson RC. Control of recombination directionality by the Listeria phage A118 protein Gp44 and the coiled-coil motif of its serine integrase. Journal of Bacteriology. PMID 28289084 DOI: 10.1128/Jb.00019-17  0.399
2016 Hadizadeh N, Johnson RC, Marko JF. Facilitated dissociation of a nucleoid protein from the bacterial chromosome. Journal of Bacteriology. PMID 27044624 DOI: 10.1128/Jb.00225-16  0.451
2016 Xiao B, McLean MM, Lei X, Marko JF, Johnson RC. Controlled rotation mechanism of DNA strand exchange by the Hin serine recombinase. Scientific Reports. 6: 23697. PMID 27032966 DOI: 10.1038/Srep23697  0.771
2016 Hancock SP, Stella S, Cascio D, Johnson RC. DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis. Plos One. 11: e0150189. PMID 26959646 DOI: 10.1371/Journal.Pone.0150189  0.573
2015 Johnson RP, Fleming AM, Beuth LR, Burrows CJ, White HS. Base Flipping within the α-Hemolysin Latch Allows Single-Molecule Identification of Mismatches in DNA. Journal of the American Chemical Society. PMID 26704521 DOI: 10.1021/Jacs.5B10710  0.359
2015 Li J, Overall CC, Johnson RC, Jones MB, McDermott JE, Heffron F, Adkins JN, Cambronne ED. ChIP-Seq Analysis of the σE Regulon of Salmonella enterica Serovar Typhimurium Reveals New Genes Implicated in Heat Shock and Oxidative Stress Response. Plos One. 10: e0138466. PMID 26389830 DOI: 10.1371/Journal.Pone.0138466  0.334
2015 Giuntoli RD, Linzer NB, Banigan EJ, Sing CE, de la Cruz MO, Graham JS, Johnson RC, Marko JF. DNA-Segment-Facilitated Dissociation of Fis and NHP6A from DNA Detected via Single-Molecule Mechanical Response. Journal of Molecular Biology. 427: 3123-36. PMID 26220077 DOI: 10.1016/J.Jmb.2015.07.015  0.5
2015 Johnson RC. Site-specific DNA Inversion by Serine Recombinases. Microbiology Spectrum. 3. PMID 26104558 DOI: 10.1128/microbiolspec.MDNA3-0047-2014  0.493
2015 Chang Y, Johnson RC. Controlling tetramer formation, subunit rotation and DNA ligation during Hin-catalyzed DNA inversion. Nucleic Acids Research. PMID 26056171 DOI: 10.1093/nar/gkv565  0.424
2015 Johnson RC. Site-specific DNA Inversion by Serine Recombinases. Microbiology Spectrum. 3: 1-36. PMID 25844275 DOI: 10.1128/microbiolspec.MDNA3-0047-2014  0.522
2014 Thompson AA, Elks PM, Marriott HM, Eamsamarng S, Higgins KR, Lewis A, Williams L, Parmar S, Shaw G, McGrath EE, Formenti F, Van Eeden FJ, Kinnula VL, Pugh CW, Sabroe I, ... Johnson RS, et al. Hypoxia-inducible factor 2α regulates key neutrophil functions in humans, mice, and zebrafish. Blood. 123: 366-76. PMID 24196071 DOI: 10.1182/Blood-2013-05-500207  0.352
2013 McLean MM, Chang Y, Dhar G, Heiss JK, Johnson RC. Multiple interfaces between a serine recombinase and an enhancer control site-specific DNA inversion. Elife. 2: e01211. PMID 24151546 DOI: 10.7554/Elife.01211  0.863
2013 Hancock SP, Ghane T, Cascio D, Rohs R, Di Felice R, Johnson RC. Control of DNA minor groove width and Fis protein binding by the purine 2-amino group. Nucleic Acids Research. 41: 6750-60. PMID 23661683 DOI: 10.1093/Nar/Gkt357  0.541
2013 Mandali S, Dhar G, Avliyakulov NK, Haykinson MJ, Johnson RC. The site-specific integration reaction of Listeria phage A118 integrase, a serine recombinase. Mobile Dna. 4: 2. PMID 23282060 DOI: 10.1186/1759-8753-4-2  0.427
2013 Xiao B, Johnson RC, Marko JF. Observation of Synapse Rotation of Engineered Recombinase HIN-H107Y Biophysical Journal. 104: 368a. DOI: 10.1016/J.Bpj.2012.11.2047  0.578
2012 Nafissi M, Chau J, Xu J, Johnson RC. Robust translation of the nucleoid protein Fis requires a remote upstream AU element and is enhanced by RNA secondary structure. Journal of Bacteriology. 194: 2458-69. PMID 22389479 DOI: 10.1128/Jb.00053-12  0.776
2012 Keith B, Johnson RS, Simon MC. HIF1α and HIF2α: sibling rivalry in hypoxic tumour growth and progression. Nature Reviews. Cancer. 12: 9-22. PMID 22169972 DOI: 10.1038/Nrc3183  0.372
2012 Graham JS, Johnson RC, Marko JF. Visualizing Higher-Order Conformations in Single DNA Molecules Biophysical Journal. 102: 276a. DOI: 10.1016/J.Bpj.2011.11.1523  0.331
2011 Graham JS, Johnson RC, Marko JF. Counting proteins bound to a single DNA molecule. Biochemical and Biophysical Research Communications. 415: 131-4. PMID 22020072 DOI: 10.1016/J.Bbrc.2011.10.029  0.412
2011 Heiss JK, Sanders ER, Johnson RC. Intrasubunit and intersubunit interactions controlling assembly of active synaptic complexes during Hin-catalyzed DNA recombination. Journal of Molecular Biology. 411: 744-64. PMID 21708172 DOI: 10.1016/J.Jmb.2011.06.021  0.84
2011 Johnson RC, McLean MM. Recombining DNA by protein swivels. Structure (London, England : 1993). 19: 751-3. PMID 21645847 DOI: 10.1016/J.Str.2011.05.007  0.737
2011 Xiao B, Zhang H, Johnson RC, Marko JF. Force-driven unbinding of proteins HU and Fis from DNA quantified using a thermodynamic Maxwell relation. Nucleic Acids Research. 39: 5568-77. PMID 21427084 DOI: 10.1093/Nar/Gkr141  0.455
2011 Graham JS, Johnson RC, Marko JF. Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA. Nucleic Acids Research. 39: 2249-59. PMID 21097894 DOI: 10.1093/Nar/Gkq1140  0.468
2011 Graham JS, Johnson RC, Marko JF. Sequence Dependence of Binding and Exchange of Nonspecific Dna-Binding Proteins Biophysical Journal. 100: 70a. DOI: 10.1016/J.Bpj.2010.12.584  0.467
2011 Xiao B, Zhang H, Johnson RC, Marko JF. Measurements of Force-Driven Changes in Bound Protein Numbers on a Single DNA Biophysical Journal. 100: 70a. DOI: 10.1016/J.Bpj.2010.12.583  0.489
2010 Mazumdar J, O'Brien WT, Johnson RS, LaManna JC, Chavez JC, Klein PS, Simon MC. O2 regulates stem cells through Wnt/β-catenin signalling. Nature Cell Biology. 12: 1007-13. PMID 20852629 DOI: 10.1038/Ncb2102  0.336
2010 Dowell NL, Sperling AS, Mason MJ, Johnson RC. Chromatin-dependent binding of the S. cerevisiae HMGB protein Nhp6A affects nucleosome dynamics and transcription. Genes & Development. 24: 2031-42. PMID 20844014 DOI: 10.1101/Gad.1948910  0.828
2010 Weidemann A, Krohne TU, Aguilar E, Kurihara T, Takeda N, Dorrell MI, Simon MC, Haase VH, Friedlander M, Johnson RS. Astrocyte hypoxic response is essential for pathological but not developmental angiogenesis of the retina. Glia. 58: 1177-85. PMID 20544853 DOI: 10.1002/Glia.20997  0.355
2010 Xiao B, Johnson RC, Marko JF. Modulation of HU-DNA interactions by salt concentration and applied force. Nucleic Acids Research. 38: 6176-85. PMID 20497998 DOI: 10.1093/Nar/Gkq435  0.398
2010 Stella S, Cascio D, Johnson RC. The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes & Development. 24: 814-26. PMID 20395367 DOI: 10.1101/Gad.1900610  0.563
2010 Kurihara T, Kubota Y, Ozawa Y, Takubo K, Noda K, Simon MC, Johnson RS, Suematsu M, Tsubota K, Ishida S, Goda N, Suda T, Okano H. von Hippel-Lindau protein regulates transition from the fetal to the adult circulatory system in retina. Development (Cambridge, England). 137: 1563-71. PMID 20388654 DOI: 10.1242/Dev.049015  0.388
2010 Takeda N, O'Dea EL, Doedens A, Kim JW, Weidemann A, Stockmann C, Asagiri M, Simon MC, Hoffmann A, Johnson RS. Differential activation and antagonistic function of HIF-{alpha} isoforms in macrophages are essential for NO homeostasis. Genes & Development. 24: 491-501. PMID 20194441 DOI: 10.1101/Gad.1881410  0.374
2010 Xiao B, Johnson RC, Marko JF. Salt Concentration and Force Affect HU-DNA Interaction Biophysical Journal. 98: 267a. DOI: 10.1016/J.Bpj.2009.12.1453  0.304
2010 Johnson RC, Stella S, Dhar G, McLean MM, Heiss JK, Marko JF. DNA Shape Recognition by the Nucleoid Protein Fis and Its Role in Chromosome Compaction and DNA Recombination Biophysical Journal. 98: 206a. DOI: 10.1016/J.Bpj.2009.12.1099  0.859
2010 Graham JS, Johnson RC, Marko JF. Direct Visualization of Fis-DNA Interactions Biophysical Journal. 98: 206a. DOI: 10.1016/J.Bpj.2009.12.1098  0.521
2009 Weidemann A, Kerdiles YM, Knaup KX, Rafie CA, Boutin AT, Stockmann C, Takeda N, Scadeng M, Shih AY, Haase VH, Simon MC, Kleinfeld D, Johnson RS. The glial cell response is an essential component of hypoxia-induced erythropoiesis in mice. The Journal of Clinical Investigation. 119: 3373-83. PMID 19809162 DOI: 10.1172/Jci39378  0.365
2009 Dhar G, Heiss JK, Johnson RC. Mechanical constraints on Hin subunit rotation imposed by the Fis/enhancer system and DNA supercoiling during site-specific recombination. Molecular Cell. 34: 746-59. PMID 19560425 DOI: 10.1016/J.Molcel.2009.05.020  0.814
2009 Dhar G, McLean MM, Heiss JK, Johnson RC. The Hin recombinase assembles a tetrameric protein swivel that exchanges DNA strands. Nucleic Acids Research. 37: 4743-56. PMID 19515933 DOI: 10.1093/Nar/Gkp466  0.845
2009 Fang HY, Hughes R, Murdoch C, Coffelt SB, Biswas SK, Harris AL, Johnson RS, Imityaz HZ, Simon MC, Fredlund E, Greten FR, Rius J, Lewis CE. Hypoxia-inducible factors 1 and 2 are important transcriptional effectors in primary macrophages experiencing hypoxia. Blood. 114: 844-59. PMID 19454749 DOI: 10.1182/Blood-2008-12-195941  0.38
2009 Graham JS, Johnson RC, Marko JF. Visualization of Force-Mediated Looping Dynamics of a Single DNA Molecule by the E. coli protein FIS Biophysical Journal. 96: 418a. DOI: 10.1016/J.Bpj.2008.12.2134  0.416
2008 Rankin EB, Rha J, Unger TL, Wu CH, Shutt HP, Johnson RS, Simon MC, Keith B, Haase VH. Hypoxia-inducible factor-2 regulates vascular tumorigenesis in mice. Oncogene. 27: 5354-8. PMID 18490920 DOI: 10.1038/Onc.2008.160  0.365
2008 Johnson RC, Heiss JK. Assembly of a tightly interwound DNA recombination complex poised for deletion. Structure (London, England : 1993). 16: 653-5. PMID 18462666 DOI: 10.1016/J.Str.2008.04.005  0.767
2008 Boutin AT, Weidemann A, Fu Z, Mesropian L, Gradin K, Jamora C, Wiesener M, Eckardt KU, Koch CJ, Ellies LG, Haddad G, Haase VH, Simon MC, Poellinger L, Powell FL, Johnson RS, et al. Epidermal sensing of oxygen is essential for systemic hypoxic response. Cell. 133: 223-34. PMID 18423195 DOI: 10.1016/J.Cell.2008.02.038  0.35
2007 Hanover JA, Love DC, DeAngelis N, O'Kane ME, Lima-Miranda R, Schulz T, Yen YM, Johnson RC, Prinz WA. The High Mobility Group Box Transcription Factor Nhp6Ap enters the nucleus by a calmodulin-dependent, Ran-independent pathway. The Journal of Biological Chemistry. 282: 33743-51. PMID 17878171 DOI: 10.1074/Jbc.M705875200  0.319
2007 Johnson RL, Simon MA. Evaluation of groundwater flow patterns around a dual-screened groundwater circulation well. Journal of Contaminant Hydrology. 93: 188-202. PMID 17428573 DOI: 10.1016/J.Jconhyd.2007.02.003  0.329
2007 Rankin EB, Biju MP, Liu Q, Unger TL, Rha J, Johnson RS, Simon MC, Keith B, Haase VH. Hypoxia-inducible factor-2 (HIF-2) regulates hepatic erythropoietin in vivo. The Journal of Clinical Investigation. 117: 1068-77. PMID 17404621 DOI: 10.1172/Jci30117  0.358
2007 Abbani MA, Papagiannis CV, Sam MD, Cascio D, Johnson RC, Clubb RT. Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly. Proceedings of the National Academy of Sciences of the United States of America. 104: 2109-14. PMID 17287355 DOI: 10.1073/Pnas.0607820104  0.856
2007 Gruber M, Hu CJ, Johnson RS, Brown EJ, Keith B, Simon MC. Acute postnatal ablation of Hif-2alpha results in anemia. Proceedings of the National Academy of Sciences of the United States of America. 104: 2301-6. PMID 17284606 DOI: 10.1073/Pnas.0608382104  0.375
2007 Papagiannis CV, Sam MD, Abbani MA, Yoo D, Cascio D, Clubb RT, Johnson RC. Fis targets assembly of the Xis nucleoprotein filament to promote excisive recombination by phage lambda. Journal of Molecular Biology. 367: 328-43. PMID 17275024 DOI: 10.1016/J.Jmb.2006.12.071  0.835
2006 Skoko D, Yoo D, Bai H, Schnurr B, Yan J, McLeod SM, Marko JF, Johnson RC. Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis. Journal of Molecular Biology. 364: 777-98. PMID 17045294 DOI: 10.1016/J.Jmb.2006.09.043  0.792
2006 Sam MD, Abbani MA, Cascio D, Johnson RC, Clubb RT. Crystallization, dehydration and preliminary X-ray analysis of excisionase (Xis) proteins cooperatively bound to DNA. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 825-8. PMID 16880568 DOI: 10.1107/S1744309106027643  0.391
2006 Tang N, Mack F, Haase VH, Simon MC, Johnson RS. pVHL function is essential for endothelial extracellular matrix deposition. Molecular and Cellular Biology. 26: 2519-30. PMID 16537898 DOI: 10.1128/Mcb.26.7.2519-2530.2006  0.368
2005 Skoko D, Yan J, Johnson RC, Marko JF. Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein Fis. Physical Review Letters. 95: 208101. PMID 16384101 DOI: 10.1103/Physrevlett.95.208101  0.446
2005 Dai Y, Wong B, Yen YM, Oettinger MA, Kwon J, Johnson RC. Determinants of HMGB proteins required to promote RAG1/2-recombination signal sequence complex assembly and catalysis during V(D)J recombination. Molecular and Cellular Biology. 25: 4413-25. PMID 15899848 DOI: 10.1128/Mcb.25.11.4413-4425.2005  0.757
2004 Song MJ, Hwang S, Wong W, Round J, Martinez-Guzman D, Turpaz Y, Liang J, Wong B, Johnson RC, Carey M, Sun R. The DNA architectural protein HMGB1 facilitates RTA-mediated viral gene expression in gamma-2 herpesviruses. Journal of Virology. 78: 12940-50. PMID 15542646 DOI: 10.1128/Jvi.78.23.12940-12950.2004  0.724
2004 Skoko D, Wong B, Johnson RC, Marko JF. Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes. Biochemistry. 43: 13867-74. PMID 15504049 DOI: 10.1021/Bi048428O  0.753
2004 Dhar G, Sanders ER, Johnson RC. Architecture of the hin synaptic complex during recombination: the recombinase subunits translocate with the DNA strands. Cell. 119: 33-45. PMID 15454079 DOI: 10.1016/J.Cell.2004.09.010  0.818
2004 Giaccia AJ, Simon MC, Johnson R. The biology of hypoxia: the role of oxygen sensing in development, normal function, and disease. Genes & Development. 18: 2183-94. PMID 15371333 DOI: 10.1101/Gad.1243304  0.329
2004 Opel ML, Aeling KA, Holmes WM, Johnson RC, Benham CJ, Hatfield GW. Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism. Molecular Microbiology. 53: 665-74. PMID 15228542 DOI: 10.1111/J.1365-2958.2004.04147.X  0.439
2004 Sanders ER, Johnson RC. Stepwise dissection of the Hin-catalyzed recombination reaction from synapsis to resolution. Journal of Molecular Biology. 340: 753-66. PMID 15223318 DOI: 10.1016/J.Jmb.2004.05.027  0.798
2004 Sam MD, Cascio D, Johnson RC, Clubb RT. Crystal structure of the excisionase-DNA complex from bacteriophage lambda. Journal of Molecular Biology. 338: 229-40. PMID 15066428 DOI: 10.1016/J.Jmb.2004.02.053  0.563
2004 Merickel SK, Johnson RC. Topological analysis of Hin-catalysed DNA recombination in vivo and in vitro. Molecular Microbiology. 51: 1143-54. PMID 14763986 DOI: 10.1046/j.1365-2958.2003.03890.x  0.5
2003 Sam MD, Cascio D, Johnson R, Clubb RT. Crystallization and preliminary X-ray crystallographic analysis of the excisionase-DNA complex from bacteriophage lambda. Acta Crystallographica. Section D, Biological Crystallography. 59: 1238-40. PMID 12832771 DOI: 10.1107/S0907444903008606  0.575
2003 Kaur A, Kassis N, Hale CL, Simon M, Elliott M, Gomez-Yafal A, Lifson JD, Desrosiers RC, Wang F, Barry P, Mach M, Johnson RP. Direct relationship between suppression of virus-specific immunity and emergence of cytomegalovirus disease in simian AIDS. Journal of Virology. 77: 5749-58. PMID 12719568 DOI: 10.1128/Jvi.77.10.5749-5758.2003  0.379
2002 Sam MD, Papagiannis CV, Connolly KM, Corselli L, Iwahara J, Lee J, Phillips M, Wojciak JM, Johnson RC, Clubb RT. Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein. Journal of Molecular Biology. 324: 791-805. PMID 12460578 DOI: 10.1016/S0022-2836(02)01150-6  0.853
2002 Sarkar D, Azaro MA, Aihara H, Papagiannis CV, Tirumalai R, Nunes-Düby SE, Johnson RC, Ellenberger T, Landy A. Differential affinity and cooperativity functions of the amino-terminal 70 residues of λ integrase Journal of Molecular Biology. 324: 775-789. PMID 12460577 DOI: 10.1016/S0022-2836(02)01199-3  0.839
2002 Masse JE, Wong B, Yen YM, Allain FHT, Johnson RC, Feigon J. The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding Journal of Molecular Biology. 323: 263-284. PMID 12381320 DOI: 10.1016/S0022-2836(02)00938-5  0.769
2002 Mitsouras K, Wong B, Arayata C, Johnson RC, Carey M. The DNA architectural protein HMGB1 displays two distinct modes of action that promote enhanceosome assembly. Molecular and Cellular Biology. 22: 4390-401. PMID 12024049 DOI: 10.1128/Mcb.22.12.4390-4401.2002  0.768
2002 Merickel SK, Sanders ER, Vázquez-Ibar JL, Johnson RC. Subunit exchange and the role of dimer flexibility in DNA binding by the Fis protein. Biochemistry. 41: 5788-98. PMID 11980482 DOI: 10.1021/BI020019+  0.823
2002 Wong B, Masse JE, Yen YM, Giannikoupolous P, Feigon J, Johnson RC. Binding to cisplatin-modified DNA by the Saccharomyces cerevisiae HMGB protein Nhp6A Biochemistry. 41: 5404-5414. PMID 11969400 DOI: 10.1021/Bi012077L  0.759
2002 Kaur A, Hale CL, Noren B, Kassis N, Simon MA, Johnson RP. Decreased frequency of cytomegalovirus (CMV)-specific CD4+ T lymphocytes in simian immunodeficiency virus-infected rhesus macaques: inverse relationship with CMV viremia. Journal of Virology. 76: 3646-58. PMID 11907204 DOI: 10.1128/Jvi.76.8.3646-3658.2002  0.325
2002 McLeod SM, Aiyar SE, Gourse RL, Johnson RC. The C-terminal domains of the RNA polymerase alpha subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter. Journal of Molecular Biology. 316: 517-29. PMID 11866515 DOI: 10.1006/Jmbi.2001.5391  0.709
2002 Aiyar SE, McLeod SM, Ross W, Hirvonen CA, Thomas MS, Johnson RC, Gourse RL. Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters. Journal of Molecular Biology. 316: 501-16. PMID 11866514 DOI: 10.1006/Jmbi.2001.5390  0.693
2002 Chiu TK, Sohn C, Dickerson RE, Johnson RC. Testing water-mediated DNA recognition by the Hin recombinase. The Embo Journal. 21: 801-14. PMID 11847127 DOI: 10.1093/Emboj/21.4.801  0.41
2001 Yen YM, Roberts PM, Johnson RC. Nuclear localization of the Saccharomyces cerevisiae HMG protein NHP6A occurs by a Ran-independent nonclassical pathway. Traffic (Copenhagen, Denmark). 2: 449-64. PMID 11422939 DOI: 10.1034/j.1600-0854.2001.20703.x  0.485
2001 McLeod SM, Johnson RC. Control of transcription by nucleoid proteins. Current Opinion in Microbiology. 4: 152-9. PMID 11282470 DOI: 10.1016/S1369-5274(00)00181-8  0.715
2000 Cheng YS, Yang WZ, Johnson RC, Yuan HS. Structural analysis of the transcriptional activation region on Fis: Crystal structures of six Fis mutants with different activation properties Journal of Molecular Biology. 302: 1139-1151. PMID 11183780 DOI: 10.1006/jmbi.2000.4123  0.355
2000 McLeod SM, Xu J, Johnson RC. Coactivation of the RpoS-dependent proP P2 promoter by fis and cyclic AMP receptor protein. Journal of Bacteriology. 182: 4180-7. PMID 10894725 DOI: 10.1128/Jb.182.15.4180-4187.2000  0.706
2000 Ellwood KB, Yen YM, Johnson RC, Carey M. Mechanism for specificity by HMG-1 in enhanceosome assembly. Molecular and Cellular Biology. 20: 4359-70. PMID 10825199 DOI: 10.1128/MCB.20.12.4359-4370.2000  0.548
1999 McLeod SM, Xu J, Cramton SE, Gaal T, Gourse RL, Johnson RC. Localization of amino acids required for Fis to function as a class II transcriptional activator at the RpoS-dependent proP P2 promoter. Journal of Molecular Biology. 294: 333-46. PMID 10610762 DOI: 10.1006/Jmbi.1999.3262  0.728
1999 Landis L, Xu J, Johnson RC. The cAMP receptor protein CRP can function as an osmoregulator of transcription in Escherichia coli Genes and Development. 13: 3081-3091. PMID 10601034 DOI: 10.1101/gad.13.23.3081  0.304
1999 Allain FHT, Yen YM, Masse JE, Schultze P, Dieckmann T, Johnson RC, Feigon J. Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding Embo Journal. 18: 2563-2579. PMID 10228169 DOI: 10.1093/Emboj/18.9.2563  0.579
1999 Ellwood K, Huang W, Johnson R, Carey M. Multiple layers of cooperativity regulate enhanceosome-responsive RNA polymerase II transcription complex assembly Molecular and Cellular Biology. 19: 2613-2623. PMID 10082527 DOI: 10.1128/Mcb.19.4.2613  0.426
1999 Masse JE, Allain FHT, Yen YM, Johnson RC, Feigon J. Use of 13C,15N-labeled DNA in a non-sequence-specific protein-DNA complex resolves ambiguous assignments of intermolecular NOEs [10] Journal of the American Chemical Society. 121: 3547-3548. DOI: 10.1021/Ja9839926  0.448
1998 Merickel SK, Haykinson MJ, Johnson RC. Communication between Hin recombinase and Fis regulatory subunits coordinate activation during of Hin-catalyzed site-specific DNA inversion Genes and Development. 12: 2803-2816. PMID 9732277 DOI: 10.1101/gad.12.17.2803  0.438
1998 Wykrzykowska JJ, Rosenzweig M, Veazey RS, Simon MA, Halvorsen K, Desrosiers RC, Johnson RP, Lackner AA. Early regeneration of thymic progenitors in rhesus macaques infected with simian immunodeficiency virus. The Journal of Experimental Medicine. 187: 1767-78. PMID 9607918 DOI: 10.1084/Jem.187.11.1767  0.312
1998 Yen YM, Wong B, Johnson RC. Determinants of DNA binding and bending by the Saccharomyces cerevisiae high mobility group protein NHP6A that are important for its biological activities. Role of the unique N terminus and putative intercalating methionine. The Journal of Biological Chemistry. 273: 4424-35. PMID 9468494 DOI: 10.1074/Jbc.273.8.4424  0.749
1997 Safo MK, Yang WZ, Corselli L, Cramton SE, Yuan HS, Johnson RC. The transactivation region of the Fis protein that controls site-specific DNA inversion contains extended mobile β-hairpin arms Embo Journal. 16: 6860-6873. PMID 9362499  0.422
1997 Xu J, Johnson RC. Activation of RpoS-dependent proP P2 transcription by the Fis protein in vitro Journal of Molecular Biology. 270: 346-359. PMID 9237902 DOI: 10.1006/jmbi.1997.1133  0.393
1997 Adams CW, Nanassy O, Johnson RC, Hughes KT. Role of arginine-43 and arginine-69 of the Hin recombinase catalytic domain in the binding of Hin to the hix DNA recombination sites Molecular Microbiology. 24: 1235-1247. PMID 9218772  0.466
1997 Bokal AJ, Ross W, Gaal T, Johnson RC, Gourse RL. Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoter Embo Journal. 16: 154-162. PMID 9009276 DOI: 10.1093/Emboj/16.1.154  0.513
1997 Trueba GA, Johnson RC. Random primed gene walking PCR: a simple procedure to retrieve nucleotide fragments adjacent to known DNA sequences. Biotechniques. 21: 20. PMID 8816227 DOI: 10.2144/96211bm02  0.33
1996 Pan CQ, Finkel SE, Cramton SE, Feng JA, Sigman DS, Johnson RC. Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts. Journal of Molecular Biology. 264: 675-95. PMID 8980678 DOI: 10.1006/jmbi.1996.0669  0.784
1996 Paull TT, Carey M, Johnson RC. Yeast HMG proteins NHP6A/B potentiate promoter-specific transcriptional activation in vivo and assembly of preinitiation complexes in vitro Genes and Development. 10: 2769-2781. PMID 8946917 DOI: 10.1101/Gad.10.21.2769  0.388
1996 Haykinson MJ, Johnson LM, Soong J, Johnson RC. The Hin dimer interface is critical for Fis-mediated activation of the catalytic steps of site-specific DNA inversion Current Biology. 6: 163-177. PMID 8673463  0.55
1996 Pan CQ, Johnson RC, Sigman DS. Identification of new Fis binding sites by DNA scission with Fis-1,10-phenanthroline-copper(I) chimeras Biochemistry. 35: 4326-4333. PMID 8605181  0.4
1995 Xu J, Johnson RC. aldB, an RpoS-dependent gene in Escherichia coli encoding an aldehyde dehydrogenase that is repressed by Fis and activated by Crp Journal of Bacteriology. 177: 3166-3175. PMID 7768815  0.336
1995 Paull TT, Johnson RC. DNA looping by Saccharomyces cerevisiae high mobility group proteins NHP6A/B: Consequences for nucleoprotein complex assembly and chromatin condensation Journal of Biological Chemistry. 270: 8744-8754. PMID 7721780 DOI: 10.1074/jbc.270.15.8744  0.56
1995 Xu J, Johnson RC. Fis activates the RpoS-dependent stationary-phase expression of proP in Escherichia coli Journal of Bacteriology. 177: 5222-5231. PMID 7545153  0.302
1994 Feng JA, Johnson RC, Dickerson RE. Hin recombinase bound to DNA: The origin of specificity in major and minor groove interactions Science. 263: 348-355. PMID 8278807 DOI: 10.1126/Science.8278807  0.524
1994 Pan CQ, Feng JA, Finkel SE, Landgraf R, Sigman D, Johnson RC. Structure of the Escherichia coli Fis-DNA complex probed by protein conjugated with 1,10-phenanthroline copper(I) complex. Proceedings of the National Academy of Sciences of the United States of America. 91: 1721-5. PMID 8127871 DOI: 10.1073/Pnas.91.5.1721  0.783
1994 Yuan HS, Wang SS, Yang WZ, Finkel SE, Johnson RC. The structure of Fis mutant Pro61Ala illustrates that the kink within the long alpha-helix is not due to the presence of the proline residue. The Journal of Biological Chemistry. 269: 28947-54. PMID 7961857  0.618
1994 Paull TT, Haykinson MJ, Johnson RC. HU and functional analogs in eukaryotes promote Hin invertasome assembly Biochimie. 76: 992-1004. PMID 7748943 DOI: 10.1016/0300-9084(94)90024-8  0.518
1994 Feng JA, Dickerson RE, Johnson RC. Proteins that promote DNA inversion and deletion Current Opinion in Structural Biology. 4: 60-66. DOI: 10.1016/S0959-440X(94)90060-4  0.569
1993 Haykinson MJ, Johnson RC. DNA looping and the helical repeat in vitro and in vivo: Effect of HU protein and enhancer location on Hin invertasome assembly Embo Journal. 12: 2503-2512. PMID 8508775  0.579
1993 Finkel SE, Johnson RC. The Fis protein: it's not just for DNA inversion anymore. Molecular Microbiology. 7: 1023. PMID 8483413  0.71
1993 Gosink KK, Ross W, Leirmo S, Osuna R, Finkel SE, Johnson RC, Gourse RL. DNA binding and bending are necessary but not sufficient for Fis-dependent activation of rrnB P1. Journal of Bacteriology. 175: 1580-9. PMID 8449867 DOI: 10.1128/Jb.175.6.1580-1589.1993  0.754
1993 Feng JA, Simon M, Mack DP, Dervan PB, Johnson RC, Dickerson RE. Crystallization and preliminary X-ray analysis of the DNA binding domain of the Hin recombinase with its DNA binding site. Journal of Molecular Biology. 232: 982-6. PMID 8355281 DOI: 10.1006/Jmbi.1993.1443  0.646
1993 Paull TT, Haykinson MJ, Johnson RC. The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures Genes and Development. 7: 1521-1534. PMID 8339930 DOI: 10.1101/Gad.7.8.1521  0.571
1993 Yuan HS, Finkel SE, Johnson RC. The crystal structure of Fis mutant Pro61-Ala: the influence of proline residues on bending of the α-helix Acta Crystallographica Section a Foundations of Crystallography. 49: c62-c62. DOI: 10.1107/S0108767378098219  0.56
1992 Finkel SE, Johnson RC. The Fis protein: it's not just for DNA inversion anymore. Molecular Microbiology. 6: 3257-65. PMID 1484481 DOI: 10.1111/j.1365-2958.1992.tb02193.x  0.77
1992 Ball CA, Osuna R, Ferguson KC, Johnson RC. Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli Journal of Bacteriology. 174: 8043-8056. PMID 1459953 DOI: 10.1128/Jb.174.24.8043-8056.1992  0.397
1991 Yuan HS, Finkel SE, Feng JA, Kaczor-Grzeskowiak M, Johnson RC, Dickerson RE. The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding. Proceedings of the National Academy of Sciences of the United States of America. 88: 9558-62. PMID 1946369 DOI: 10.1073/Pnas.88.21.9558  0.765
1991 Moskowitz IPG, Heichman KA, Johnson RC. Alignment of recombination sites in Hin-mediated site-specific DNA recombination Genes and Development. 5: 1635-1645. PMID 1885005  0.499
1991 Heichman KA, Moskowitz IPG, Johnson RC. Configuration of DNA strands and mechanism of strand exchange in the Hin invertasome as revealed by analysis of recombinant knots Genes and Development. 5: 1622-1634. PMID 1885004  0.515
1991 Osuna R, Finkel SE, Johnson RC. Identification of two functional regions in Fis: the N-terminus is required to promote Hin-mediated DNA inversion but not lambda excision. The Embo Journal. 10: 1593-603. PMID 1851089 DOI: 10.1002/J.1460-2075.1991.Tb07680.X  0.769
1991 Ball CA, Johnson RC. Multiple effects of Fis on integration and the control of lysogeny in phage λ Journal of Bacteriology. 173: 4032-4038. PMID 1829454 DOI: 10.1128/jb.173.13.4032-4038.1991  0.34
1991 Ball CA, Johnson RC. Efficient excision of phage λ from the Escherichia coli chromosome requires the Fis protein Journal of Bacteriology. 173: 4027-4031. PMID 1829453  0.332
1991 Johnson RC. Mechanism of site-specific DNA inversion in bacteria Current Opinion in Genetics and Development. 1: 404-411. PMID 1668651 DOI: 10.1016/S0959-437X(05)80307-7  0.445
1990 Heichman KA, Johnson RC. The Hin invertasome: Protein-mediated joining of distant recombination sites at the enhancer Science. 249: 511-517. PMID 2166334  0.514
1989 Johnson RC, Bruist MF. Intermediates in Hin-mediated DNA inversion: a role for Fis and the recombinational enhancer in the strand exchange reaction. The Embo Journal. 8: 1581-1590. DOI: 10.1002/j.1460-2075.1989.tb03542.x  0.411
1988 Johnson RC, Ball CA, Pfeffer D, Simon MI. Isolation of the gene encoding the Hin recombinational enhancer binding protein. Proceedings of the National Academy of Sciences of the United States of America. 85: 3484-8. PMID 2835774  0.584
1987 Bruist MF, Glasgow AC, Johnson RC, Simon MI. Fis binding to the recombinational enhancer of the Hin DNA inversion system. Genes & Development. 1: 762-72. PMID 2828170 DOI: 10.1101/Gad.1.8.762  0.63
1987 Johnson RC, Glasgow AC, Simon MI. Spatial relationship of the Fis binding sites for Hin recombinational enhancer activity. Nature. 329: 462-5. PMID 2821402 DOI: 10.1038/329462A0  0.65
1987 Johnson RC, Simon MI. Enhancers of site-specific recombination in bacteria Trends in Genetics. 3: 262-267. DOI: 10.1016/0168-9525(87)90261-7  0.506
1986 Johnson RC, Bruist MF, Simon MI. Host protein requirements for in vitro site-specific DNA inversion. Cell. 46: 531-9. PMID 3524854 DOI: 10.1016/0092-8674(86)90878-0  0.618
1985 Johnson RC, Simon MI. Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60 bp recombinational enhancer. Cell. 41: 781-91. PMID 2988787 DOI: 10.1016/S0092-8674(85)80059-3  0.581
1984 Johnson RC, Reznikoff WS. Copy number control of Tn5 transposition. Genetics. 107: 9-18. PMID 6327462  0.506
1984 Johnson RC, Bruist MB, Glaccum MB, Simon MI. In vitro analysis of Hin-mediated site-specific recombination. Cold Spring Harbor Symposia On Quantitative Biology. 49: 751-60. PMID 6099257  0.464
1984 Johnson RC, Reznikoff WS. Role of the IS50 R proteins in the promotion and control of Tn5 transposition. Journal of Molecular Biology. 177: 645-61. PMID 6090674 DOI: 10.1016/0022-2836(84)90042-1  0.55
1983 Johnson RC, Reznikoff WS. DNA sequences at the ends of transposon Tn5 required for transposition. Nature. 304: 280-2. PMID 6306482 DOI: 10.1038/304280A0  0.642
1982 Johnson RC, Yin JC, Reznikoff WS. Control of Tn5 transposition in Escherichia coli is mediated by protein from the right repeat. Cell. 30: 873-82. PMID 6291786 DOI: 10.1016/0092-8674(82)90292-6  0.558
1981 Rothstein SJ, Jorgensen RA, Yin JC, Yong-di Z, Johnson RC, Reznikoff WS. Genetic organization of Tn5. Cold Spring Harbor Symposia On Quantitative Biology. 45: 99-105. PMID 6271497 DOI: 10.1101/Sqb.1981.045.01.018  0.436
1981 Johnson RC, Reznikoff WS. Localization of the Tn5 transposase promoter using the cycling reaction of RNA polymerase. Nucleic Acids Research. 9: 1873-83. PMID 6264398 DOI: 10.1093/Nar/9.8.1873  0.589
1977 Johnson RC, Wood NB, Ely B. Isolation and Characterization of Bacteriophages for Caulobacter crescentus Journal of General Virology. 37: 323-335. DOI: 10.1099/0022-1317-37-2-323  0.303
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