| Year |
Citation |
Score |
| 2024 |
Jansen G, Qi T, Latora V, Amoutzias GD, Delneri D, Oliver SG, Nicosia G. Minimisation of metabolic networks defines a new functional class of genes. Nature Communications. 15: 9076. PMID 39482321 DOI: 10.1038/s41467-024-52816-2 |
0.671 |
|
| 2024 |
Timouma S, Balarezo-Cisneros LN, Schwartz J-M, Delneri D. Development of a genome-scale metabolic model for the lager hybrid yeast to understand the evolution of metabolic pathways in industrial settings. Msystems. e0042924. PMID 38819150 DOI: 10.1128/msystems.00429-24 |
0.327 |
|
| 2023 |
Balarezo-Cisneros LN, Timouma S, Hanak A, Currin A, Valle F, Delneri D. High quality de novo genome assembly of the non-conventional yeast Kazachstania bulderi describes a potential low pH production host for biorefineries. Communications Biology. 6: 918. PMID 37679437 DOI: 10.1038/s42003-023-05285-0 |
0.339 |
|
| 2022 |
Visinoni F, Delneri D. Mitonuclear interplay in yeast: from speciation to phenotypic adaptation. Current Opinion in Genetics & Development. 76: 101957. PMID 35870233 DOI: 10.1016/j.gde.2022.101957 |
0.368 |
|
| 2022 |
de la Cerda Garcia-Caro R, Hokamp K, Roche F, Thompson G, Timouma S, Delneri D, Bond U. Aneuploidy influences the gene expression profiles in Saccharomyces pastorianus group I and II strains during fermentation. Plos Genetics. 18: e1010149. PMID 35389986 DOI: 10.1371/journal.pgen.1010149 |
0.363 |
|
| 2021 |
Naseeb S, Visinoni F, Hu Y, Hinks Roberts AJ, Maslowska A, Walsh T, Smart KA, Louis EJ, Delneri D. Restoring fertility in yeast hybrids: Breeding and quantitative genetics of beneficial traits. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34518218 DOI: 10.1073/pnas.2101242118 |
0.772 |
|
| 2021 |
Giannakou K, Visinoni F, Zhang P, Nathoo N, Jones P, Cotterrell M, Vrhovsek U, Delneri D. Biotechnological exploitation of Saccharomyces jurei and its hybrids in craft beer fermentation uncovers new aroma combinations. Food Microbiology. 100: 103838. PMID 34416971 DOI: 10.1016/j.fm.2021.103838 |
0.321 |
|
| 2021 |
Balarezo-Cisneros LN, Parker S, Fraczek MG, Timouma S, Wang P, O'Keefe RT, Millar CB, Delneri D. Functional and transcriptional profiling of non-coding RNAs in yeast reveal context-dependent phenotypes and in trans effects on the protein regulatory network. Plos Genetics. 17: e1008761. PMID 33493158 DOI: 10.1371/journal.pgen.1008761 |
0.306 |
|
| 2020 |
Giannakou K, Cotterrell M, Delneri D. Genomic Adaptation of Species to Industrial Environments. Frontiers in Genetics. 11: 916. PMID 33193572 DOI: 10.3389/fgene.2020.00916 |
0.391 |
|
| 2020 |
Timouma S, Schwartz JM, Delneri D. HybridMine: A Pipeline for Allele Inheritance and Gene Copy Number Prediction in Hybrid Genomes and Its Application to Industrial Yeasts. Microorganisms. 8. PMID 33050146 DOI: 10.3390/microorganisms8101554 |
0.362 |
|
| 2020 |
Hewitt SK, Duangrattanalert K, Burgis T, Zeef LAH, Naseeb S, Delneri D. Plasticity of Mitochondrial DNA Inheritance and its Impact on Nuclear Gene Transcription in Yeast Hybrids. Microorganisms. 8. PMID 32244414 DOI: 10.3390/microorganisms8040494 |
0.772 |
|
| 2020 |
Alsammar H, Delneri D. An update on the diversity, ecology and biogeography of the Saccharomyces genus. Fems Yeast Research. PMID 32196094 DOI: 10.1093/Femsyr/Foaa013 |
0.433 |
|
| 2020 |
Giannakou K, Cotterrell M, Delneri D. Genomic Adaptation of Saccharomyces Species to Industrial Environments Frontiers in Genetics. 11. DOI: 10.3389/Fgene.2020.00916 |
0.493 |
|
| 2019 |
Zhao C, Fraczek MG, Dineen L, Lebedinec R, Macheleidt J, Heinekamp T, Delneri D, Bowyer P, Brakhage AA, Bromley M. High-Throughput Gene Replacement in Aspergillus fumigatus. Current Protocols in Microbiology. 54: e88. PMID 31518064 DOI: 10.1002/Cpmc.88 |
0.407 |
|
| 2019 |
Fraczek MG, Zhao C, Dineen L, Lebedinec R, Bowyer P, Bromley M, Delneri D. Fast and Reliable PCR Amplification from Aspergillus fumigatus Spore Suspension Without Traditional DNA Extraction. Current Protocols in Microbiology. 54: e89. PMID 31518062 DOI: 10.1002/Cpmc.89 |
0.309 |
|
| 2018 |
Alsammar HF, Naseeb S, Brancia LB, Gilman RT, Wang P, Delneri D. Targeted metagenomics approach to capture the biodiversity of Saccharomyces genus in wild environments. Environmental Microbiology Reports. PMID 30507071 DOI: 10.1111/1758-2229.12724 |
0.765 |
|
| 2018 |
Naseeb S, Alsammar H, Burgis T, Donaldson I, Knyazev N, Knight C, Delneri D. Whole Genome Sequencing, Assembly and Phenotypic Profiling for the New Budding Yeast Species . G3 (Bethesda, Md.). PMID 30097472 DOI: 10.1534/G3.118.200476 |
0.798 |
|
| 2018 |
Parker S, Fraczek MG, Wu J, Shamsah S, Manousaki A, Dungrattanalert K, de Almeida RA, Invernizzi E, Burgis T, Omara W, Griffiths-Jones S, Delneri D, O'Keefe RT. Large-scale profiling of noncoding RNA function in yeast. Plos Genetics. 14: e1007253. PMID 29529031 DOI: 10.1371/Journal.Pgen.1007253 |
0.468 |
|
| 2018 |
Fraczek MG, Naseeb S, Delneri D. History of Genome Editing in Yeast. Yeast (Chichester, England). PMID 29345746 DOI: 10.1002/Yea.3308 |
0.775 |
|
| 2017 |
Naseeb S, Ames RM, Delneri D, Lovell SC. Rapid functional and evolutionary changes follow gene duplication in yeast. Proceedings. Biological Sciences. 284. PMID 28835561 DOI: 10.1098/Rspb.2017.1393 |
0.797 |
|
| 2017 |
Naseeb S, James SA, Alsammar H, Michaels CJ, Gini B, Nueno-Palop C, Bond CJ, McGhie H, Roberts IN, Delneri D. Saccharomyces jurei sp. nov., isolation and genetic identification of a novel yeast species from Quercus robur. International Journal of Systematic and Evolutionary Microbiology. PMID 28639933 DOI: 10.1099/Ijsem.0.002013 |
0.767 |
|
| 2017 |
Parker S, Fraczek M, Wu J, Shamsah S, Manousaki A, Dungrattanalert K, de Almeida RA, Estrada-Rivadeneyra D, Omara W, Delneri D, O'Keefe RT. A resource for functional profiling of noncoding RNA in the yeast Saccharomyces cerevisiae. Rna (New York, N.Y.). PMID 28468764 DOI: 10.1261/Rna.061564.117 |
0.459 |
|
| 2016 |
de Almeida RA, Fraczek MG, Parker S, Delneri D, O'Keefe RT. Non-coding RNAs and disease: the classical ncRNAs make a comeback. Biochemical Society Transactions. 44: 1073-8. PMID 27528754 DOI: 10.1042/Bst20160089 |
0.306 |
|
| 2016 |
Hooks KB, Naseeb S, Parker S, Griffiths-Jones S, Delneri D. Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae. Genetics. PMID 27194751 DOI: 10.1534/Genetics.115.185363 |
0.758 |
|
| 2016 |
Naseeb S, Carter Z, Minnis D, Donaldson I, Zeef L, Delneri D. Widespread Impact of Chromosomal Inversions on Gene Expression Uncovers Robustness via Phenotypic Buffering. Molecular Biology and Evolution. PMID 26929245 DOI: 10.1093/Molbev/Msw045 |
0.806 |
|
| 2015 |
Zytynska SE, Jourdie V, Naseeb S, Delneri D, Preziosi RF. Induced expression of defence-related genes in barley is specific to aphid genotype Biological Journal of the Linnean Society. DOI: 10.1111/Bij.12715 |
0.752 |
|
| 2014 |
Hooks KB, Delneri D, Griffiths-Jones S. Intron evolution in Saccharomycetaceae. Genome Biology and Evolution. 6: 2543-56. PMID 25364803 DOI: 10.1093/Gbe/Evu196 |
0.468 |
|
| 2014 |
Paget CM, Schwartz JM, Delneri D. Environmental systems biology of cold-tolerant phenotype in Saccharomyces species adapted to grow at different temperatures. Molecular Ecology. 23: 5241-57. PMID 25243355 DOI: 10.1111/Mec.12930 |
0.425 |
|
| 2014 |
Hewitt SK, Donaldson IJ, Lovell SC, Delneri D. Sequencing and characterisation of rearrangements in three S. pastorianus strains reveals the presence of chimeric genes and gives evidence of breakpoint reuse Plos One. 9. PMID 24643015 DOI: 10.1371/Journal.Pone.0092203 |
0.498 |
|
| 2013 |
Piatkowska EM, Naseeb S, Knight D, Delneri D. Chimeric protein complexes in hybrid species generate novel phenotypes. Plos Genetics. 9: e1003836. PMID 24137105 DOI: 10.1371/Journal.Pgen.1003836 |
0.79 |
|
| 2013 |
Norris M, Lovell S, Delneri D. Characterization and prediction of haploinsufficiency using systems-level gene properties in yeast. G3 (Bethesda, Md.). 3: 1965-77. PMID 24048642 DOI: 10.1534/G3.113.008144 |
0.449 |
|
| 2012 |
Naseeb S, Delneri D. Impact of chromosomal inversions on the yeast DAL cluster. Plos One. 7: e42022. PMID 22916115 DOI: 10.1371/Journal.Pone.0042022 |
0.778 |
|
| 2012 |
Wu J, Delneri D, O'Keefe RT. Non-coding RNAs in Saccharomyces cerevisiae: what is the function? Biochemical Society Transactions. 40: 907-11. PMID 22817757 DOI: 10.1042/Bst20120042 |
0.355 |
|
| 2012 |
Davey HM, Cross EJM, Davey CL, Gkargkas K, Delneri D, Hoyle DC, Oliver SG, Kell DB, Griffith GW. Genome-wide analysis of longevity in nutrient-deprived Saccharomyces cerevisiae reveals importance of recycling in maintaining cell viability Environmental Microbiology. 14: 1249-1260. PMID 22356628 DOI: 10.1111/J.1462-2920.2012.02705.X |
0.709 |
|
| 2011 |
Zakrzewska A, van Eikenhorst G, Burggraaff JE, Vis DJ, Hoefsloot H, Delneri D, Oliver SG, Brul S, Smits GJ. Genome-wide analysis of yeast stress survival and tolerance acquisition to analyze the central trade-off between growth rate and cellular robustness. Molecular Biology of the Cell. 22: 4435-46. PMID 21965291 DOI: 10.1091/Mbc.E10-08-0721 |
0.643 |
|
| 2011 |
Vascotto C, Bisetto E, Li M, Zeef LA, D'Ambrosio C, Domenis R, Comelli M, Delneri D, Scaloni A, Altieri F, Mavelli I, Quadrifoglio F, Kelley MR, Tell G. Knock-in reconstitution studies reveal an unexpected role of Cys-65 in regulating APE1/Ref-1 subcellular trafficking and function. Molecular Biology of the Cell. 22: 3887-901. PMID 21865600 DOI: 10.1091/Mbc.E11-05-0391 |
0.31 |
|
| 2011 |
Delneri D. Competition experiments coupled with high-throughput analyses for functional genomics studies in yeast. Methods in Molecular Biology (Clifton, N.J.). 759: 271-82. PMID 21863493 DOI: 10.1007/978-1-61779-173-4_16 |
0.493 |
|
| 2010 |
Delneri D. Barcode technology in yeast: application to pharmacogenomics. Fems Yeast Research. 10: 1083-9. PMID 20846145 DOI: 10.1111/J.1567-1364.2010.00676.X |
0.362 |
|
| 2010 |
Barton MD, Delneri D, Oliver SG, Rattray M, Bergman CM. Evolutionary systems biology of amino acid biosynthetic cost in yeast. Plos One. 5: e11935. PMID 20808905 DOI: 10.1371/Journal.Pone.0011935 |
0.636 |
|
| 2010 |
Ames RM, Rash BM, Hentges KE, Robertson DL, Delneri D, Lovell SC. Gene duplication and environmental adaptation within yeast populations Genome Biology and Evolution. 2: 591-601. PMID 20660110 DOI: 10.1093/Gbe/Evq043 |
0.489 |
|
| 2010 |
Carter Z, Delneri D. New generation of loxP-mutated deletion cassettes for the genetic manipulation of yeast natural isolates. Yeast (Chichester, England). 27: 765-75. PMID 20641014 DOI: 10.1002/Yea.1774 |
0.465 |
|
| 2010 |
Taylor EJ, Campbell SG, Griffiths CD, Reid PJ, Slaven JW, Harrison RJ, Sims PF, Pavitt GD, Delneri D, Ashe MP. Fusel alcohols regulate translation initiation by inhibiting eIF2B to reduce ternary complex in a mechanism that may involve altering the integrity and dynamics of the eIF2B body. Molecular Biology of the Cell. 21: 2202-16. PMID 20444979 DOI: 10.1091/Mbc.E09-11-0962 |
0.589 |
|
| 2009 |
Bivi N, Romanello M, Harrison R, Clarke I, Hoyle DC, Moro L, Ortolani F, Bonetti A, Quadrifoglio F, Tell G, Delneri D. Identification of secondary targets of N-containing bisphosphonates in mammalian cells via parallel competition analysis of the barcoded yeast deletion collection. Genome Biology. 10: R93. PMID 19744312 DOI: 10.1186/Gb-2009-10-9-R93 |
0.64 |
|
| 2009 |
Vascotto C, Cesaratto L, Zeef LA, Deganuto M, D'Ambrosio C, Scaloni A, Romanello M, Damante G, Taglialatela G, Delneri D, Kelley MR, Mitra S, Quadrifoglio F, Tell G. Genome-wide analysis and proteomic studies reveal APE1/Ref-1 multifunctional role in mammalian cells. Proteomics. 9: 1058-74. PMID 19180539 DOI: 10.1002/Pmic.200800638 |
0.352 |
|
| 2008 |
Delneri D, Hoyle DC, Gkargkas K, Cross EJM, Rash B, Zeef L, Leong HS, Davey HM, Hayes A, Kell DB, Griffith GW, Oliver SG. Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures Nature Genetics. 40: 113-117. PMID 18157128 DOI: 10.1038/Ng.2007.49 |
0.708 |
|
| 2007 |
Holland S, Lodwig E, Sideri T, Reader T, Clarke I, Gkargkas K, Hoyle DC, Delneri D, Oliver SG, Avery SV. Application of the comprehensive set of heterozygous yeast deletion mutants to elucidate the molecular basis of cellular chromium toxicity. Genome Biology. 8: R268. PMID 18088421 DOI: 10.1186/Gb-2007-8-12-R268 |
0.665 |
|
| 2007 |
Harrison R, Papp B, Pál C, Oliver SG, Delneri D. Plasticity of genetic interactions in metabolic networks of yeast Proceedings of the National Academy of Sciences of the United States of America. 104: 2307-2312. PMID 17284612 DOI: 10.1073/Pnas.0607153104 |
0.765 |
|
| 2007 |
Zakrzewska A, Boorsma A, Delneri D, Brul S, Oliver SG, Klis FM. Cellular processes and pathways that protect Saccharomyces cerevisiae cells against the plasma membrane-perturbing compound chitosan. Eukaryotic Cell. 6: 600-8. PMID 17259547 DOI: 10.1128/Ec.00355-06 |
0.691 |
|
| 2004 |
Colson I, Delneri D, Oliver SG. Effects of reciprocal chromosomal translocations on the fitness of Saccharomyces cerevisiae. Embo Reports. 5: 392-8. PMID 15105830 DOI: 10.1038/Sj.Embor.7400123 |
0.718 |
|
| 2004 |
Delneri D. The Use of Yeast Mutant Collections in Genome Profiling and Large-Scale Functional Analysis Current Genomics. 5: 59-65. DOI: 10.2174/1389202043490032 |
0.366 |
|
| 2003 |
Cornell M, Paton NW, Hedeler C, Kirby P, Delneri D, Hayes A, Oliver SG. GIMS: an integrated data storage and analysis environment for genomic and functional data. Yeast (Chichester, England). 20: 1291-306. PMID 14618567 DOI: 10.1002/Yea.1047 |
0.693 |
|
| 2003 |
Delneri D, Colson I, Grammenoudi S, Roberts IN, Louis EJ, Oliver SG. Engineering evolution to study speciation in yeasts. Nature. 422: 68-72. PMID 12621434 DOI: 10.1038/Nature01418 |
0.727 |
|
| 2002 |
Lockhart L, Oliver SG, Delneri D. Tools for the study of genome rearrangements in laboratory and industrial yeast strains Yeast. 19: 441-448. PMID 11921092 DOI: 10.1002/Yea.852 |
0.715 |
|
| 2001 |
Delneri D, Brancia FL, Oliver SG. Towards a truly integrative biology through the functional genomics of yeast. Current Opinion in Biotechnology. 12: 87-91. PMID 11167079 DOI: 10.1016/S0958-1669(00)00179-8 |
0.469 |
|
| 2000 |
Delneri D, Tomlin GC, Wixon JL, Hutter A, Sefton M, Louis EJ, Oliver SG. Exploring redundancy in the yeast genome: an improved strategy for use of the cre-loxP system. Gene. 252: 127-35. PMID 10903444 DOI: 10.1016/S0378-1119(00)00217-1 |
0.47 |
|
| 2000 |
Delneri D, Gardner DC, Bruschi CV, Oliver SG. Disruption of seven hypothetical aryl alcohol dehydrogenase genes from Saccharomyces cerevisiae and construction of a multiple knock-out strain. Yeast (Chichester, England). 15: 1681-9. PMID 10572264 DOI: 10.1002/(Sici)1097-0061(199911)15:15<1681::Aid-Yea486>3.0.Co;2-A |
0.436 |
|
| 1997 |
Bertocchi C, Delneri D, Signore S, Weng Z, Bruschi CV. Characterization of microbial cellulose from a high-producing mutagenized Acetobacter pasteurianus strain. Biochimica Et Biophysica Acta. 1336: 211-217. PMID 9305792 DOI: 10.1016/S0304-4165(97)00030-5 |
0.329 |
|
| 1997 |
Coglievina M, Klima R, Bertani I, Delneri D, Zaccaria P, Bruschi CV. Sequencing of a 40.5 kb fragment located on the left arm of chromosome VII from Saccharomyces cerevisiae. Yeast (Chichester, England). 13: 55-64. PMID 9046087 DOI: 10.1002/(Sici)1097-0061(199701)13:1<55::Aid-Yea48>3.0.Co;2-9 |
0.393 |
|
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