Daniela Delneri - Publications

Computational and Evolutionary Biology University of Manchester, Manchester, England, United Kingdom 

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hewitt SK, Duangrattanalert K, Burgis T, Zeef LAH, Naseeb S, Delneri D. Plasticity of Mitochondrial DNA Inheritance and its Impact on Nuclear Gene Transcription in Yeast Hybrids. Microorganisms. 8. PMID 32244414 DOI: 10.3390/microorganisms8040494  1
2020 Alsammar H, Delneri D. An update on the diversity, ecology and biogeography of the Saccharomyces genus. Fems Yeast Research. PMID 32196094 DOI: 10.1093/femsyr/foaa013  0.52
2019 Zhao C, Fraczek MG, Dineen L, Lebedinec R, Macheleidt J, Heinekamp T, Delneri D, Bowyer P, Brakhage AA, Bromley M. High-Throughput Gene Replacement in Aspergillus fumigatus. Current Protocols in Microbiology. 54: e88. PMID 31518064 DOI: 10.1002/cpmc.88  0.52
2019 Fraczek MG, Zhao C, Dineen L, Lebedinec R, Bowyer P, Bromley M, Delneri D. Fast and Reliable PCR Amplification from Aspergillus fumigatus Spore Suspension Without Traditional DNA Extraction. Current Protocols in Microbiology. 54: e89. PMID 31518062 DOI: 10.1002/cpmc.89  0.52
2018 Alsammar HF, Naseeb S, Brancia LB, Gilman RT, Wang P, Delneri D. Targeted metagenomics approach to capture the biodiversity of Saccharomyces genus in wild environments. Environmental Microbiology Reports. PMID 30507071 DOI: 10.1111/1758-2229.12724  1
2018 Naseeb S, Alsammar H, Burgis T, Donaldson I, Knyazev N, Knight C, Delneri D. Whole Genome Sequencing, Assembly and Phenotypic Profiling for the New Budding Yeast Species . G3 (Bethesda, Md.). PMID 30097472 DOI: 10.1534/g3.118.200476  1
2018 Parker S, Fraczek MG, Wu J, Shamsah S, Manousaki A, Dungrattanalert K, de Almeida RA, Invernizzi E, Burgis T, Omara W, Griffiths-Jones S, Delneri D, O'Keefe RT. Large-scale profiling of noncoding RNA function in yeast. Plos Genetics. 14: e1007253. PMID 29529031 DOI: 10.1371/journal.pgen.1007253  0.68
2018 Fraczek MG, Naseeb S, Delneri D. History of Genome Editing in Yeast. Yeast (Chichester, England). PMID 29345746 DOI: 10.1002/yea.3308  1
2017 Naseeb S, Ames RM, Delneri D, Lovell SC. Rapid functional and evolutionary changes follow gene duplication in yeast. Proceedings. Biological Sciences. 284. PMID 28835561 DOI: 10.1098/rspb.2017.1393  1
2017 Naseeb S, James SA, Alsammar H, Michaels CJ, Gini B, Nueno-Palop C, Bond CJ, McGhie H, Roberts IN, Delneri D. Saccharomyces jurei sp. nov., isolation and genetic identification of a novel yeast species from Quercus robur. International Journal of Systematic and Evolutionary Microbiology. PMID 28639933 DOI: 10.1099/ijsem.0.002013  1
2017 Parker S, Fraczek M, Wu J, Shamsah S, Manousaki A, Dungrattanalert K, de Almeida RA, Estrada-Rivadeneyra D, Omara W, Delneri D, O'Keefe RT. A resource for functional profiling of noncoding RNA in the yeast Saccharomyces cerevisiae. Rna (New York, N.Y.). PMID 28468764 DOI: 10.1261/rna.061564.117  0.32
2016 de Almeida RA, Fraczek MG, Parker S, Delneri D, O'Keefe RT. Non-coding RNAs and disease: the classical ncRNAs make a comeback. Biochemical Society Transactions. 44: 1073-8. PMID 27528754 DOI: 10.1042/BST20160089  0.52
2016 Hooks KB, Naseeb S, Parker S, Griffiths-Jones S, Delneri D. Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae. Genetics. PMID 27194751 DOI: 10.1534/genetics.115.185363  1
2016 Naseeb S, Carter Z, Minnis D, Donaldson I, Zeef L, Delneri D. Widespread Impact of Chromosomal Inversions on Gene Expression Uncovers Robustness via Phenotypic Buffering. Molecular Biology and Evolution. PMID 26929245 DOI: 10.1093/molbev/msw045  1
2015 Zytynska SE, Jourdie V, Naseeb S, Delneri D, Preziosi RF. Induced expression of defence-related genes in barley is specific to aphid genotype Biological Journal of the Linnean Society. DOI: 10.1111/bij.12715  0.52
2014 Hooks KB, Delneri D, Griffiths-Jones S. Intron evolution in Saccharomycetaceae. Genome Biology and Evolution. 6: 2543-56. PMID 25364803 DOI: 10.1093/gbe/evu196  0.52
2014 Paget CM, Schwartz JM, Delneri D. Environmental systems biology of cold-tolerant phenotype in Saccharomyces species adapted to grow at different temperatures. Molecular Ecology. 23: 5241-57. PMID 25243355 DOI: 10.1111/mec.12930  0.52
2014 Hewitt SK, Donaldson IJ, Lovell SC, Delneri D. Sequencing and characterisation of rearrangements in three S. pastorianus strains reveals the presence of chimeric genes and gives evidence of breakpoint reuse Plos One. 9. PMID 24643015 DOI: 10.1371/journal.pone.0092203  0.52
2013 Piatkowska EM, Naseeb S, Knight D, Delneri D. Chimeric protein complexes in hybrid species generate novel phenotypes. Plos Genetics. 9: e1003836. PMID 24137105 DOI: 10.1371/journal.pgen.1003836  1
2013 Norris M, Lovell S, Delneri D. Characterization and prediction of haploinsufficiency using systems-level gene properties in yeast. G3 (Bethesda, Md.). 3: 1965-77. PMID 24048642 DOI: 10.1534/g3.113.008144  0.52
2012 Naseeb S, Delneri D. Impact of chromosomal inversions on the yeast DAL cluster. Plos One. 7: e42022. PMID 22916115 DOI: 10.1371/journal.pone.0042022  1
2012 Davey HM, Cross EJM, Davey CL, Gkargkas K, Delneri D, Hoyle DC, Oliver SG, Kell DB, Griffith GW. Genome-wide analysis of longevity in nutrient-deprived Saccharomyces cerevisiae reveals importance of recycling in maintaining cell viability Environmental Microbiology. 14: 1249-1260. PMID 22356628 DOI: 10.1111/j.1462-2920.2012.02705.x  0.52
2011 Zakrzewska A, van Eikenhorst G, Burggraaff JE, Vis DJ, Hoefsloot H, Delneri D, Oliver SG, Brul S, Smits GJ. Genome-wide analysis of yeast stress survival and tolerance acquisition to analyze the central trade-off between growth rate and cellular robustness. Molecular Biology of the Cell. 22: 4435-46. PMID 21965291 DOI: 10.1091/mbc.E10-08-0721  0.52
2011 Vascotto C, Bisetto E, Li M, Zeef LA, D'Ambrosio C, Domenis R, Comelli M, Delneri D, Scaloni A, Altieri F, Mavelli I, Quadrifoglio F, Kelley MR, Tell G. Knock-in reconstitution studies reveal an unexpected role of Cys-65 in regulating APE1/Ref-1 subcellular trafficking and function. Molecular Biology of the Cell. 22: 3887-901. PMID 21865600 DOI: 10.1091/mbc.E11-05-0391  0.52
2010 Barton MD, Delneri D, Oliver SG, Rattray M, Bergman CM. Evolutionary systems biology of amino acid biosynthetic cost in yeast. Plos One. 5: e11935. PMID 20808905 DOI: 10.1371/journal.pone.0011935  0.52
2010 Ames RM, Rash BM, Hentges KE, Robertson DL, Delneri D, Lovell SC. Gene duplication and environmental adaptation within yeast populations Genome Biology and Evolution. 2: 591-601. PMID 20660110 DOI: 10.1093/gbe/evq043  0.52
2010 Carter Z, Delneri D. New generation of loxP-mutated deletion cassettes for the genetic manipulation of yeast natural isolates. Yeast (Chichester, England). 27: 765-75. PMID 20641014 DOI: 10.1002/yea.1774  0.4
2010 Taylor EJ, Campbell SG, Griffiths CD, Reid PJ, Slaven JW, Harrison RJ, Sims PF, Pavitt GD, Delneri D, Ashe MP. Fusel alcohols regulate translation initiation by inhibiting eIF2B to reduce ternary complex in a mechanism that may involve altering the integrity and dynamics of the eIF2B body. Molecular Biology of the Cell. 21: 2202-16. PMID 20444979 DOI: 10.1091/mbc.E09-11-0962  0.52
2009 Bivi N, Romanello M, Harrison R, Clarke I, Hoyle DC, Moro L, Ortolani F, Bonetti A, Quadrifoglio F, Tell G, Delneri D. Identification of secondary targets of N-containing bisphosphonates in mammalian cells via parallel competition analysis of the barcoded yeast deletion collection. Genome Biology. 10: R93. PMID 19744312 DOI: 10.1186/gb-2009-10-9-r93  0.4
2009 Vascotto C, Cesaratto L, Zeef LA, Deganuto M, D'Ambrosio C, Scaloni A, Romanello M, Damante G, Taglialatela G, Delneri D, Kelley MR, Mitra S, Quadrifoglio F, Tell G. Genome-wide analysis and proteomic studies reveal APE1/Ref-1 multifunctional role in mammalian cells. Proteomics. 9: 1058-74. PMID 19180539 DOI: 10.1002/pmic.200800638  0.52
2008 Delneri D, Hoyle DC, Gkargkas K, Cross EJM, Rash B, Zeef L, Leong HS, Davey HM, Hayes A, Kell DB, Griffith GW, Oliver SG. Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures Nature Genetics. 40: 113-117. PMID 18157128 DOI: 10.1038/ng.2007.49  0.52
2007 Holland S, Lodwig E, Sideri T, Reader T, Clarke I, Gkargkas K, Hoyle DC, Delneri D, Oliver SG, Avery SV. Application of the comprehensive set of heterozygous yeast deletion mutants to elucidate the molecular basis of cellular chromium toxicity. Genome Biology. 8: R268. PMID 18088421 DOI: 10.1186/gb-2007-8-12-r268  0.52
2007 Harrison R, Papp B, Pál C, Oliver SG, Delneri D. Plasticity of genetic interactions in metabolic networks of yeast Proceedings of the National Academy of Sciences of the United States of America. 104: 2307-2312. PMID 17284612 DOI: 10.1073/pnas.0607153104  0.52
2007 Zakrzewska A, Boorsma A, Delneri D, Brul S, Oliver SG, Klis FM. Cellular processes and pathways that protect Saccharomyces cerevisiae cells against the plasma membrane-perturbing compound chitosan. Eukaryotic Cell. 6: 600-8. PMID 17259547 DOI: 10.1128/EC.00355-06  0.52
2004 Colson I, Delneri D, Oliver SG. Effects of reciprocal chromosomal translocations on the fitness of Saccharomyces cerevisiae. Embo Reports. 5: 392-8. PMID 15105830 DOI: 10.1038/sj.embor.7400123  0.52
2003 Cornell M, Paton NW, Hedeler C, Kirby P, Delneri D, Hayes A, Oliver SG. GIMS: an integrated data storage and analysis environment for genomic and functional data. Yeast (Chichester, England). 20: 1291-306. PMID 14618567 DOI: 10.1002/yea.1047  0.52
2003 Delneri D, Colson I, Grammenoudi S, Roberts IN, Louis EJ, Oliver SG. Engineering evolution to study speciation in yeasts. Nature. 422: 68-72. PMID 12621434 DOI: 10.1038/nature01418  0.52
2002 Lockhart L, Oliver SG, Delneri D. Tools for the study of genome rearrangements in laboratory and industrial yeast strains Yeast. 19: 441-448. PMID 11921092 DOI: 10.1002/yea.852  0.52
2001 Delneri D, Brancia FL, Oliver SG. Towards a truly integrative biology through the functional genomics of yeast. Current Opinion in Biotechnology. 12: 87-91. PMID 11167079 DOI: 10.1016/S0958-1669(00)00179-8  0.52
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