Helder Nakaya - Publications

Affiliations: 
University of São Paulo, São Paulo, São Paulo, Brazil 
Area:
Bioinformatics, systems biology, immunology

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Li S, Sullivan NL, Rouphael N, Yu T, Banton S, Maddur MS, McCausland M, Chiu C, Canniff J, Dubey S, Liu K, Tran V, Hagan T, Duraisingham S, Wieland A, ... ... Nakaya HI, et al. Metabolic Phenotypes of Response to Vaccination in Humans. Cell. PMID 28502771 DOI: 10.1016/j.cell.2017.04.026  0.76
2017 Kazmin D, Nakaya HI, Lee EK, Johnson MJ, van der Most R, van den Berg RA, Ballou WR, Jongert E, Wille-Reece U, Ockenhouse C, Aderem A, Zak DE, Sadoff J, Hendriks J, Wrammert J, et al. Systems analysis of protective immune responses to RTS,S malaria vaccination in humans. Proceedings of the National Academy of Sciences of the United States of America. PMID 28193898 DOI: 10.1073/pnas.1621489114  0.76
2016 Kasturi SP, Kozlowski PA, Nakaya HI, Burger MC, Russo P, Pham M, Kovalenkov Y, Silveira EL, Havenar-Daughton C, Burton SL, Kilgore KM, Johnson MJ, Nabi R, Legere T, Sher ZJ, et al. Adjuvanting an SIV vaccine with TLR ligands encapsulated in nanoparticles induces persistent antibody responses and enhanced protection in TRIM5α restrictive macaques. Journal of Virology. PMID 27928002 DOI: 10.1128/JVI.01844-16  0.76
2016 Ellebedy AH, Jackson KJ, Kissick HT, Nakaya HI, Davis CW, Roskin KM, McElroy AK, Oshansky CM, Elbein R, Thomas S, Lyon GM, Spiropoulou CF, Mehta AK, Thomas PG, Boyd SD, et al. Defining antigen-specific plasmablast and memory B cell subsets in human blood after viral infection or vaccination. Nature Immunology. PMID 27525369 DOI: 10.1038/ni.3533  0.4
2016 Ravindran R, Loebbermann J, Nakaya HI, Khan N, Ma H, Gama L, Machiah DK, Lawson B, Hakimpour P, Wang YC, Li S, Sharma P, Kaufman RJ, Martinez J, Pulendran B. The amino acid sensor GCN2 controls gut inflammation by inhibiting inflammasome activation. Nature. PMID 26982722 DOI: 10.1038/nature17186  0.4
2016 Schons-Fonseca L, da Silva JB, Milanez JS, Domingos RH, Smith JL, Nakaya HI, Grossman AD, Ho PL, da Costa RM. Analysis of LexA binding sites and transcriptomics in response to genotoxic stress in Leptospira interrogans. Nucleic Acids Research. 44: 1179-91. PMID 26762976 DOI: 10.1093/nar/gkv1536  0.4
2016 Nakaya HI, Clutterbuck E, Kazmin D, Wang L, Cortese M, Bosinger SE, Patel NB, Zak DE, Aderem A, Dong T, Del Giudice G, Rappuoli R, Cerundolo V, Pollard AJ, Pulendran B, et al. Systems biology of immunity to MF59-adjuvanted versus nonadjuvanted trivalent seasonal influenza vaccines in early childhood. Proceedings of the National Academy of Sciences of the United States of America. 113: 1853-8. PMID 26755593 DOI: 10.1073/pnas.1519690113  0.76
2015 Nakaya HI, Hagan T, Duraisingham SS, Lee EK, Kwissa M, Rouphael N, Frasca D, Gersten M, Mehta AK, Gaujoux R, Li GM, Gupta S, Ahmed R, Mulligan MJ, Shen-Orr S, et al. Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures. Immunity. 43: 1186-98. PMID 26682988 DOI: 10.1016/j.immuni.2015.11.012  0.4
2015 Nakaya HI, Pulendran B. Vaccinology in the era of high-throughput biology. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 25964458 DOI: 10.1098/rstb.2014.0146  0.76
2015 Hagan T, Nakaya HI, Subramaniam S, Pulendran B. Systems vaccinology: Enabling rational vaccine design with systems biological approaches. Vaccine. PMID 25858860 DOI: 10.1016/j.vaccine.2015.03.072  0.4
2015 Akondy RS, Johnson PL, Nakaya HI, Edupuganti S, Mulligan MJ, Lawson B, Miller JD, Pulendran B, Antia R, Ahmed R. Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination. Proceedings of the National Academy of Sciences of the United States of America. 112: 3050-5. PMID 25713354 DOI: 10.1073/pnas.1500475112  0.4
2014 Oh JZ, Ravindran R, Chassaing B, Carvalho FA, Maddur MS, Bower M, Hakimpour P, Gill KP, Nakaya HI, Yarovinsky F, Sartor RB, Gewirtz AT, Pulendran B. TLR5-mediated sensing of gut microbiota is necessary for antibody responses to seasonal influenza vaccination. Immunity. 41: 478-92. PMID 25220212 DOI: 10.1016/j.immuni.2014.08.009  0.4
2014 Kwissa M, Nakaya HI, Onlamoon N, Wrammert J, Villinger F, Perng GC, Yoksan S, Pattanapanyasat K, Chokephaibulkit K, Ahmed R, Pulendran B. Dengue virus infection induces expansion of a CD14(+)CD16(+) monocyte population that stimulates plasmablast differentiation. Cell Host & Microbe. 16: 115-27. PMID 24981333 DOI: 10.1016/j.chom.2014.06.001  0.76
2014 Tamim S, Vo DT, Uren PJ, Qiao M, Bindewald E, Kasprzak WK, Shapiro BA, Nakaya HI, Burns SC, Araujo PR, Nakano I, Radek AJ, Kuersten S, Smith AD, Penalva LO. Genomic analyses reveal broad impact of miR-137 on genes associated with malignant transformation and neuronal differentiation in glioblastoma cells. Plos One. 9: e85591. PMID 24465609 DOI: 10.1371/journal.pone.0085591  0.4
2014 Li S, Rouphael N, Duraisingham S, Romero-Steiner S, Presnell S, Davis C, Schmidt DS, Johnson SE, Milton A, Rajam G, Kasturi S, Carlone GM, Quinn C, Chaussabel D, Palucka AK, ... ... Nakaya HI, et al. Molecular signatures of antibody responses derived from a systems biology study of five human vaccines. Nature Immunology. 15: 195-204. PMID 24336226 DOI: 10.1038/ni.2789  0.4
2014 Ravindran R, Khan N, Nakaya HI, Li S, Loebbermann J, Maddur MS, Park Y, Jones DP, Chappert P, Davoust J, Weiss DS, Virgin HW, Ron D, Pulendran B. Vaccine activation of the nutrient sensor GCN2 in dendritic cells enhances antigen presentation. Science (New York, N.Y.). 343: 313-7. PMID 24310610 DOI: 10.1126/science.1246829  0.4
2014 Tan Y, Tamayo P, Nakaya H, Pulendran B, Mesirov JP, Haining WN. Gene signatures related to B-cell proliferation predict influenza vaccine-induced antibody response. European Journal of Immunology. 44: 285-95. PMID 24136404 DOI: 10.1002/eji.201343657  0.4
2013 Beckedorff FC, Ayupe AC, Crocci-Souza R, Amaral MS, Nakaya HI, Soltys DT, Menck CFM, Reis EM, Verjovski-Almeida S. The Intronic Long Noncoding RNA ANRASSF1 Recruits PRC2 to the RASSF1A Promoter, Reducing the Expression of RASSF1A and Increasing Cell Proliferation Plos Genetics. 9. PMID 23990798 DOI: 10.1371/journal.pgen.1003705  0.4
2013 Pulendran B, Oh JZ, Nakaya HI, Ravindran R, Kazmin DA. Immunity to viruses: learning from successful human vaccines. Immunological Reviews. 255: 243-55. PMID 23947360 DOI: 10.1111/imr.12099  0.4
2013 Li S, Nakaya HI, Kazmin DA, Oh JZ, Pulendran B. Systems biological approaches to measure and understand vaccine immunity in humans. Seminars in Immunology. 25: 209-18. PMID 23796714 DOI: 10.1016/j.smim.2013.05.003  0.76
2013 Norris BA, Uebelhoer LS, Nakaya HI, Price AA, Grakoui A, Pulendran B. Chronic but not acute virus infection induces sustained expansion of myeloid suppressor cell numbers that inhibit viral-specific T cell immunity. Immunity. 38: 309-21. PMID 23438822 DOI: 10.1016/j.immuni.2012.10.022  0.76
2013 Duraisingham SS, Rouphael N, Cavanagh MM, Nakaya HI, Goronzy JJ, Pulendran B. Systems biology of vaccination in the elderly. Current Topics in Microbiology and Immunology. 363: 117-42. PMID 22903566 DOI: 10.1007/82_2012_250  0.76
2012 Nakaya HI, Gardner J, Poo YS, Major L, Pulendran B, Suhrbier A. Gene profiling of Chikungunya virus arthritis in a mouse model reveals significant overlap with rheumatoid arthritis. Arthritis and Rheumatism. 64: 3553-63. PMID 22833339 DOI: 10.1002/art.34631  0.76
2012 Jones CL, Sampson TR, Nakaya HI, Pulendran B, Weiss DS. Repression of bacterial lipoprotein production by Francisella novicida facilitates evasion of innate immune recognition. Cellular Microbiology. 14: 1531-43. PMID 22632124 DOI: 10.1111/j.1462-5822.2012.01816.x  0.4
2012 Kwissa M, Nakaya HI, Oluoch H, Pulendran B. Distinct TLR adjuvants differentially stimulate systemic and local innate immune responses in nonhuman primates. Blood. 119: 2044-55. PMID 22246032 DOI: 10.1182/blood-2011-10-388579  0.76
2012 Nakaya HI, Pulendran B. Systems vaccinology: its promise and challenge for HIV vaccine development. Current Opinion in Hiv and Aids. 7: 24-31. PMID 22156839 DOI: 10.1097/COH.0b013e32834dc37b  0.76
2012 Nakaya HI, Li S, Pulendran B. Systems vaccinology: learning to compute the behavior of vaccine induced immunity. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 4: 193-205. PMID 22012654 DOI: 10.1002/wsbm.163  0.76
2011 Nakaya HI, Wrammert J, Lee EK, Racioppi L, Marie-Kunze S, Haining WN, Means AR, Kasturi SP, Khan N, Li GM, McCausland M, Kanchan V, Kokko KE, Li S, Elbein R, et al. Systems biology of vaccination for seasonal influenza in humans. Nature Immunology. 12: 786-95. PMID 21743478 DOI: 10.1038/ni.2067  0.4
2011 Duraiswamy J, Ibegbu CC, Masopust D, Miller JD, Araki K, Doho GH, Tata P, Gupta S, Zilliox MJ, Nakaya HI, Pulendran B, Haining WN, Freeman GJ, Ahmed R. Phenotype, function, and gene expression profiles of programmed death-1(hi) CD8 T cells in healthy human adults. Journal of Immunology (Baltimore, Md. : 1950). 186: 4200-12. PMID 21383243 DOI: 10.4049/jimmunol.1001783  0.4
2011 Kasturi SP, Skountzou I, Albrecht RA, Koutsonanos D, Hua T, Nakaya HI, Ravindran R, Stewart S, Alam M, Kwissa M, Villinger F, Murthy N, Steel J, Jacob J, Hogan RJ, et al. Programming the magnitude and persistence of antibody responses with innate immunity. Nature. 470: 543-7. PMID 21350488 DOI: 10.1038/nature09737  0.4
2010 Pulendran B, Li S, Nakaya HI. Systems vaccinology. Immunity. 33: 516-29. PMID 21029962 DOI: 10.1016/j.immuni.2010.10.006  0.76
2010 Manicassamy S, Reizis B, Ravindran R, Nakaya H, Salazar-Gonzalez RM, Wang YC, Pulendran B. Activation of beta-catenin in dendritic cells regulates immunity versus tolerance in the intestine. Science (New York, N.Y.). 329: 849-53. PMID 20705860 DOI: 10.1126/science.1188510  0.4
2010 Tang H, Cao W, Kasturi SP, Ravindran R, Nakaya HI, Kundu K, Murthy N, Kepler TB, Malissen B, Pulendran B. The T helper type 2 response to cysteine proteases requires dendritic cell-basophil cooperation via ROS-mediated signaling. Nature Immunology. 11: 608-17. PMID 20495560 DOI: 10.1038/ni.1883  0.4
2009 Querec TD, Akondy RS, Lee EK, Cao W, Nakaya HI, Teuwen D, Pirani A, Gernert K, Deng J, Marzolf B, Kennedy K, Wu H, Bennouna S, Oluoch H, Miller J, et al. Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans. Nature Immunology. 10: 116-25. PMID 19029902 DOI: 10.1038/ni.1688  0.4
2008 Louro R, El-Jundi T, Nakaya HI, Reis EM, Verjovski-Almeida S. Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci Genomics. 92: 18-25. PMID 18495418 DOI: 10.1016/j.ygeno.2008.03.013  0.4
2007 Nakaya HI, Beckedorff FC, Baldini ML, Fachel AA, Reis EM, Verjovski-Almeida S. Splice variants of TLE family genes and up-regulation of a TLE3 isoform in prostate tumors Biochemical and Biophysical Research Communications. 364: 918-923. PMID 18273443 DOI: 10.1016/j.bbrc.2007.10.097  0.4
2007 Nakaya HI, Amaral PP, Louro R, Lopes A, Fachel AA, Moreira YB, El-Jundi TA, da Silva AM, Reis EM, Verjovski-Almeida S. Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription Genome Biology. 8. PMID 17386095 DOI: 10.1186/gb-2007-8-3-r43  0.4
2007 Louro R, Nakaya HI, Amaral PP, Festa F, Sogayar MC, da Silva AM, Verjovski-Almeida S, Reis EM. Androgen responsive intronic non-coding RNAs Bmc Biology. 5. PMID 17263875 DOI: 10.1186/1741-7007-5-4  0.4
2005 Reis EM, Louro R, Nakaya HI, Verjovski-Almeida S. As antisense RNA gets intronic Omics a Journal of Integrative Biology. 9: 2-12. PMID 15805775 DOI: 10.1089/omi.2005.9.2  0.4
2004 Reis EM, Nakaya HI, Louro R, Canavez FC, Flatschart AV, Almeida GT, Egidio CM, Paquola AC, Machado AA, Festa F, Yamamoto D, Alvarenga R, da Silva CC, Brito GC, Simon SD, et al. Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer. Oncogene. 23: 6684-92. PMID 15221013 DOI: 10.1038/sj.onc.1207880  0.4
2004 Louro R, Nakaya HI, Paquola ACM, Martins EAL, Da Silva AM, Verjovski-Almeida S, Reis EM. RASL11A, member of a novel small monomeric GTPase gene family, is down-regulated in prostate tumors Biochemical and Biophysical Research Communications. 316: 618-627. PMID 15033445 DOI: 10.1016/j.bbrc.2004.02.091  0.4
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