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Boxuan Simen Zhao - Publications

Affiliations: 
University of Chicago, Chicago, IL 
Area:
Chemical Biology, Epigenetics
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lee SY, Cheah JS, Zhao B, Xu C, Roh H, Kim CK, Cho KF, Udeshi ND, Carr SA, Ting AY. Engineered allostery in light-regulated LOV-Turbo enables precise spatiotemporal control of proximity labeling in living cells. Nature Methods. PMID 37188954 DOI: 10.1038/s41592-023-01880-5  0.521
2023 Lee SY, Cheah JS, Zhao B, Xu C, Roh H, Kim CK, Cho KF, Udeshi ND, Carr SA, Ting AY. Engineered allostery in light-regulated LOV-Turbo enables precise spatiotemporal control of proximity labeling in living cells. Biorxiv : the Preprint Server For Biology. PMID 36945504 DOI: 10.1101/2023.03.09.531939  0.521
2021 Liu C, Cui X, Zhao BS, Narkhede P, Gao Y, Liu J, Dou X, Dai Q, Zhang LS, He C. Correction to "DNA 5-Methylcytosine-Specific Amplification and Sequencing". Journal of the American Chemical Society. PMID 33570926 DOI: 10.1021/jacs.1c01145  0.306
2020 Huang H, Weng H, Sun W, Qin X, Shi H, Wu H, Zhao BS, Mesquita A, Liu C, Yuan CL, Hu YC, Hüttelmaier S, Skibbe JR, Su R, Deng X, et al. Publisher Correction: Recognition of RNA N-methyladenosine by IGF2BP proteins enhances mRNA stability and translation. Nature Cell Biology. PMID 32855523 DOI: 10.1038/S41556-020-00580-Y  0.481
2020 Han S, Zhao BS, Myers SA, Carr SA, He C, Ting AY. RNA-protein interaction mapping via MS2- or Cas13-based APEX targeting. Proceedings of the National Academy of Sciences of the United States of America. PMID 32839320 DOI: 10.1073/Pnas.2006617117  0.667
2020 Liu C, Cui X, Zhao BS, Narkhede P, Gao Y, Liu J, Dou X, Dai Q, Zhang LS, He C. DNA 5-Methylcytosine Specific Amplification and Sequencing. Journal of the American Chemical Society. PMID 32077696 DOI: 10.1021/Jacs.9B12707  0.336
2020 Lu M, Zhang Z, Xue M, Zhao BS, Harder O, Li A, Liang X, Gao TZ, Xu Y, Zhou J, Feng Z, Niewiesk S, Peeples ME, He C, Li J. N-methyladenosine modification enables viral RNA to escape recognition by RNA sensor RIG-I. Nature Microbiology. PMID 32015498 DOI: 10.1038/S41564-019-0653-9  0.43
2019 Xue M, Zhao BS, Zhang Z, Lu M, Harder O, Chen P, Lu Z, Li A, Ma Y, Xu Y, Liang X, Zhou J, Niewiesk S, Peeples ME, He C, et al. Viral N-methyladenosine upregulates replication and pathogenesis of human respiratory syncytial virus. Nature Communications. 10: 4595. PMID 31597913 DOI: 10.1038/S41467-019-12504-Y  0.463
2019 Huang H, Weng H, Zhou K, Wu T, Zhao BS, Sun M, Chen Z, Deng X, Xiao G, Auer F, Klemm L, Wu H, Zuo Z, Qin X, Dong Y, et al. Histone H3 trimethylation at lysine 36 guides mA RNA modification co-transcriptionally. Nature. PMID 30867593 DOI: 10.1038/S41586-019-1016-7  0.536
2018 Zhao BS, Roundtree IA, He C. Publisher Correction: Post-transcriptional gene regulation by mRNA modifications. Nature Reviews. Molecular Cell Biology. PMID 30341428 DOI: 10.1038/S41580-018-0075-1  0.491
2018 Huang H, Weng H, Sun W, Qin X, Shi H, Wu H, Zhao BS, Mesquita A, Liu C, Yuan CL, Hu YC, Hüttelmaier S, Skibbe JR, Su R, Deng X, et al. Author Correction: Recognition of RNA N-methyladenosine by IGF2BP proteins enhances mRNA stability and translation. Nature Cell Biology. PMID 29880862 DOI: 10.1038/S41556-018-0102-7  0.44
2018 Zhao YT, Kwon DY, Johnson BS, Fasolino M, Lamonica JM, Kim YJ, Zhao BS, He C, Vahedi G, Kim TH, Zhou Z. Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains. Genome Research. PMID 29848492 DOI: 10.1101/Gr.233775.117  0.446
2018 Huang H, Weng H, Sun W, Qin X, Shi H, Wu H, Zhao BS, Mesquita A, Liu C, Yuan CL, Hu YC, Hüttelmaier S, Skibbe JR, Su R, Deng X, et al. Recognition of RNA N-methyladenosine by IGF2BP proteins enhances mRNA stability and translation. Nature Cell Biology. 20: 285-295. PMID 29476152 DOI: 10.1038/S41556-018-0045-Z  0.506
2017 Weng H, Huang H, Wu H, Qin X, Zhao BS, Dong L, Shi H, Skibbe J, Shen C, Hu C, Sheng Y, Wang Y, Wunderlich M, Zhang B, Dore LC, et al. METTL14 Inhibits Hematopoietic Stem/Progenitor Differentiation and Promotes Leukemogenesis via mRNA m6A Modification. Cell Stem Cell. PMID 29290617 DOI: 10.1016/J.Stem.2017.11.016  0.479
2017 Zhao B, Nachtergaele S, Roundtree IA, He C. Our views of dynamic N6-methyladenosine RNA methylation. Rna (New York, N.Y.). PMID 29222116 DOI: 10.1261/Rna.064295.117  0.519
2017 Zhao BS, He C. "Gamete On" for m(6)A: YTHDF2 Exerts Essential Functions in Female Fertility. Molecular Cell. 67: 903-905. PMID 28938096 DOI: 10.1016/J.Molcel.2017.09.004  0.416
2017 Tirumuru N, Zhao BS, Lu W, Lu Z, He C, Wu L. Correction: N(6)-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression. Elife. 6. PMID 28901284 DOI: 10.7554/eLife.31482  0.342
2017 Zhang S, Zhao BS, Zhou A, Lin K, Zheng S, Lu Z, Chen Y, Sulman EP, Xie K, Bögler O, Majumder S, He C, Huang S. m(6)A Demethylase ALKBH5 Maintains Tumorigenicity of Glioblastoma Stem-like Cells by Sustaining FOXM1 Expression and Cell Proliferation Program. Cancer Cell. PMID 28344040 DOI: 10.1016/J.Ccell.2017.02.013  0.524
2017 Zhao BS, Wang X, Beadell AV, Lu Z, Shi H, Kuuspalu A, Ho RK, He C. m(6)A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition. Nature. PMID 28192787 DOI: 10.1038/Nature21355  0.522
2017 Shi H, Wang X, Lu Z, Zhao BS, Ma H, Hsu PJ, He C. YTHDF3 facilitates translation and decay of N(6)-methyladenosine-modified RNA. Cell Research. PMID 28106072 DOI: 10.1038/Cr.2017.15  0.531
2017 Ma L, Zhao B, Chen K, Thomas A, Tuteja JH, He X, He C, White K. Evolution of transcript modification by N6-methyladenosine in primates. Genome Research. PMID 28052920 DOI: 10.1101/Gr.212563.116  0.344
2016 Zhao BS, Roundtree IA, He C. Post-transcriptional gene regulation by mRNA modifications. Nature Reviews. Molecular Cell Biology. PMID 27808276 DOI: 10.1038/Nrm.2016.132  0.531
2016 Lichinchi G, Zhao BS, Wu Y, Lu Z, Qin Y, He C, Rana TM. Dynamics of Human and Viral RNA Methylation during Zika Virus Infection. Cell Host & Microbe. PMID 27773536 DOI: 10.1016/J.Chom.2016.10.002  0.513
2016 Zahid OK, Zhao BS, He C, Hall AR. Quantifying mammalian genomic DNA hydroxymethylcytosine content using solid-state nanopores. Scientific Reports. 6: 29565. PMID 27383905 DOI: 10.1038/Srep29565  0.435
2016 Tirumuru N, Zhao BS, Lu W, Lu Z, He C, Wu L. N(6)-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression. Elife. 5. PMID 27371828 DOI: 10.7554/Elife.15528  0.479
2016 Chen K, Zhao BS, He C. Nucleic Acid Modifications in Regulation of Gene Expression. Cell Chemical Biology. 23: 74-85. PMID 26933737 DOI: 10.1016/J.Chembiol.2015.11.007  0.493
2016 Huang H, Weng H, Qin X, Zhao BS, Dore L, Strong J, Su R, Ferchen K, Li C, Dong L, Jiang X, He C, Chen J. The N6-Adenine Methyltransferase METTL14 Plays an Oncogenic Role in Acute Myeloid Leukemia Blood. 128: 1536-1536. DOI: 10.1182/Blood.V128.22.1536.1536  0.448
2015 Wang X, Zhao BS, Roundtree IA, Lu Z, Han D, Ma H, Weng X, Chen K, Shi H, He C. N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency. Cell. 161: 1388-99. PMID 26046440 DOI: 10.1016/J.Cell.2015.05.014  0.55
2015 Zhao BS, He C. Fate by RNA methylation: m6A steers stem cell pluripotency. Genome Biology. 16: 43. PMID 25723450 DOI: 10.1186/S13059-015-0609-1  0.49
2015 Lu X, Zhao BS, He C. TET family proteins: oxidation activity, interacting molecules, and functions in diseases. Chemical Reviews. 115: 2225-39. PMID 25675246 DOI: 10.1021/Cr500470N  0.395
2015 Lu X, Han D, Zhao BS, Song CX, Zhang LS, Doré LC, He C. Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics. Cell Research. 25: 386-9. PMID 25591929 DOI: 10.1038/Cr.2015.5  0.536
2015 Zhao BS, He C. Pseudouridine in a new era of RNA modifications. Cell Research. 25: 153-4. PMID 25367125 DOI: 10.1038/Cr.2014.143  0.497
2014 Hon GC, Song CX, Du T, Jin F, Selvaraj S, Lee AY, Yen CA, Ye Z, Mao SQ, Wang BA, Kuan S, Edsall LE, Zhao BS, Xu GL, He C, et al. 5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation. Molecular Cell. 56: 286-97. PMID 25263596 DOI: 10.1016/J.Molcel.2014.08.026  0.588
2014 Hao Z, Lou H, Zhu R, Zhu J, Zhang D, Zhao BS, Zeng S, Chen X, Chan J, He C, Chen PR. The multiple antibiotic resistance regulator MarR is a copper sensor in Escherichia coli. Nature Chemical Biology. 10: 21-8. PMID 24185215 DOI: 10.1038/Nchembio.1380  0.505
2014 Hon G, Song C, Jin F, Selvaraj S, Lee AY, Yen C, Ye Z, Mao S, Wang B, Kuan S, Edsall L, Zhao BS, Xu G, He C, Ren B. Abstract 460: Base resolution epigenomic analysis reveals a role for Tet2 in modulating enhancer activity Molecular and Cellular Biology. 74: 460-460. DOI: 10.1158/1538-7445.Am2014-460  0.599
2013 Zhao BS, Zhang G, Zeng S, He C, Chen PR. Probing subcellular organic hydroperoxide formation via a genetically encoded ratiometric and reversible fluorescent indicator. Integrative Biology : Quantitative Biosciences From Nano to Macro. 5: 1485-9. PMID 24190510 DOI: 10.1039/C3Ib40209F  0.514
2013 Ji Q, Zhao BS, He C. A highly sensitive and genetically encoded fluorescent reporter for ratiometric monitoring of quinones in living cells. Chemical Communications (Cambridge, England). 49: 8027-9. PMID 23903292 DOI: 10.1039/C3Cc44534H  0.585
2012 Wang J, Karpus J, Zhao BS, Luo Z, Chen PR, He C. A selective fluorescent probe for carbon monoxide imaging in living cells. Angewandte Chemie (International Ed. in English). 51: 9652-6. PMID 22930547 DOI: 10.1002/Anie.201203684  0.492
2010 Zhao BS, Liang Y, Song Y, Zheng C, Hao Z, Chen PR. A highly selective fluorescent probe for visualization of organic hydroperoxides in living cells. Journal of the American Chemical Society. 132: 17065-7. PMID 21077671 DOI: 10.1021/Ja1071114  0.464
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