Year |
Citation |
Score |
2023 |
Legnini I, Emmenegger L, Zappulo A, Rybak-Wolf A, Wurmus R, Martinez AO, Jara CC, Boltengagen A, Hessler T, Mastrobuoni G, Kempa S, Zinzen R, Woehler A, Rajewsky N. Spatiotemporal, optogenetic control of gene expression in organoids. Nature Methods. 20: 1544-1552. PMID 37735569 DOI: 10.1038/s41592-023-01986-w |
0.341 |
|
2019 |
McCorkindale AL, Wahle P, Werner S, Jungreis I, Menzel P, Shukla CJ, Abreu RLP, Irizarry RA, Meyer IM, Kellis M, Zinzen RP. A gene expression atlas of embryonic neurogenesis in reveals complex spatiotemporal regulation of lncRNAs. Development (Cambridge, England). 146. PMID 30923056 DOI: 10.1242/Dev.175265 |
0.472 |
|
2018 |
Menzel P, McCorkindale AL, Stefanov SR, Zinzen RP, Meyer IM. Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis. Rna Biology. PMID 30582411 DOI: 10.1080/15476286.2018.1558907 |
0.516 |
|
2018 |
Ibrahim MM, Karabacak A, Glahs A, Kolundzic E, Hirsekorn A, Carda A, Tursun B, Zinzen RP, Lacadie SA, Ohler U. Determinants of promoter and enhancer transcription directionality in metazoans. Nature Communications. 9: 4472. PMID 30367057 DOI: 10.1038/S41467-018-06962-Z |
0.483 |
|
2017 |
Hafez D, Karabacak A, Krueger S, Hwang YC, Wang LS, Zinzen RP, Ohler U. McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes. Genome Biology. 18: 199. PMID 29070071 DOI: 10.1186/S13059-017-1316-X |
0.457 |
|
2017 |
Karaiskos N, Wahle P, Alles J, Boltengagen A, Ayoub S, Kipar C, Kocks C, Rajewsky N, Zinzen RP. The Drosophila embryo at single-cell transcriptome resolution. Science (New York, N.Y.). PMID 28860209 DOI: 10.1126/Science.Aan3235 |
0.469 |
|
2017 |
Alles J, Karaiskos N, Praktiknjo SD, Grosswendt S, Wahle P, Ruffault PL, Ayoub S, Schreyer L, Boltengagen A, Birchmeier C, Zinzen R, Kocks C, Rajewsky N. Cell fixation and preservation for droplet-based single-cell transcriptomics. Bmc Biology. 15: 44. PMID 28526029 DOI: 10.1186/S12915-017-0383-5 |
0.321 |
|
2016 |
Glahs A, Zinzen RP. Putting chromatin in its place: the pioneer factor NeuroD1 modulates chromatin state to drive cell fate decisions. The Embo Journal. 35: 1-3. PMID 26567170 DOI: 10.15252/Embj.201593324 |
0.446 |
|
2014 |
Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. A conserved role for Snail as a potentiator of active transcription. Genes & Development. 28: 167-81. PMID 24402316 DOI: 10.1101/Gad.230953.113 |
0.638 |
|
2012 |
Bonn S, Zinzen RP, Perez-Gonzalez A, Riddell A, Gavin AC, Furlong EE. Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP. Nature Protocols. 7: 978-94. PMID 22538849 DOI: 10.1038/Nprot.2012.049 |
0.601 |
|
2012 |
Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nature Genetics. 44: 148-56. PMID 22231485 DOI: 10.1038/Ng.1064 |
0.619 |
|
2009 |
Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature. 462: 65-70. PMID 19890324 DOI: 10.1038/Nature08531 |
0.633 |
|
2008 |
Zinzen RP, Furlong EE. Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis. Genome Biology. 9: 240. PMID 19012800 DOI: 10.1186/Gb-2008-9-11-240 |
0.594 |
|
2007 |
Goltsev Y, Fuse N, Frasch M, Zinzen RP, Lanzaro G, Levine M. Evolution of the dorsal-ventral patterning network in the mosquito, Anopheles gambiae. Development (Cambridge, England). 134: 2415-24. PMID 17522157 DOI: 10.1242/Dev.02863 |
0.413 |
|
2007 |
Zinzen RP, Papatsenko D. Enhancer responses to similarly distributed antagonistic gradients in development. Plos Computational Biology. 3: e84. PMID 17500585 DOI: 10.1371/Journal.Pcbi.0030084 |
0.465 |
|
2007 |
Zeitlinger J, Zinzen RP, Stark A, Kellis M, Zhang H, Young RA, Levine M. Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo. Genes & Development. 21: 385-90. PMID 17322397 DOI: 10.1101/Gad.1509607 |
0.441 |
|
2006 |
Zinzen RP, Cande J, Ronshaugen M, Papatsenko D, Levine M. Evolution of the ventral midline in insect embryos. Developmental Cell. 11: 895-902. PMID 17141163 DOI: 10.1016/J.Devcel.2006.10.012 |
0.47 |
|
2006 |
Zinzen RP, Senger K, Levine M, Papatsenko D. Computational models for neurogenic gene expression in the Drosophila embryo. Current Biology : Cb. 16: 1358-65. PMID 16750631 DOI: 10.1016/J.Cub.2006.05.044 |
0.455 |
|
2006 |
De Renzis S, Yu J, Zinzen R, Wieschaus E. Dorsal-ventral pattern of Delta trafficking is established by a snail-tom-neuralized pathway Developmental Cell. 10: 257-264. PMID 16459304 DOI: 10.1016/J.Devcel.2006.01.011 |
0.408 |
|
2005 |
Biemar F, Zinzen R, Ronshaugen M, Sementchenko V, Manak JR, Levine MS. Spatial regulation of microRNA gene expression in the Drosophila embryo. Proceedings of the National Academy of Sciences of the United States of America. 102: 15907-11. PMID 16249329 DOI: 10.1073/Pnas.0507817102 |
0.338 |
|
2004 |
Markstein M, Zinzen R, Markstein P, Yee KP, Erives A, Stathopoulos A, Levine M. A regulatory code for neurogenic gene expression in the Drosophila embryo. Development (Cambridge, England). 131: 2387-94. PMID 15128669 DOI: 10.1242/Dev.01124 |
0.493 |
|
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