Thomas J. Sharpton, PhD - Publications

Microbiology Oregon State University, Corvallis, OR 
Metagenomics, Comparative Genomics, Bioinformatics

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Mendez RL, Miranda C, Armour CR, Sharpton TJ, Stevens JF, Kwon JY. Supplementation with Sea Vegetables and Exerts Metabolic Benefits in Diet-Induced Obesity in Mice. Current Developments in Nutrition. 4: nzaa072. PMID 32467865 DOI: 10.1093/cdn/nzaa072  0.8
2019 Jiang D, Armour CR, Hu C, Mei M, Tian C, Sharpton TJ, Jiang Y. Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities. Frontiers in Genetics. 10: 995. PMID 31781153 DOI: 10.3389/fgene.2019.00995  0.8
2019 Armour CR, Nayfach S, Pollard KS, Sharpton TJ. A Metagenomic Meta-analysis Reveals Functional Signatures of Health and Disease in the Human Gut Microbiome. Msystems. 4. PMID 31120034 DOI: 10.1128/mSystems.00332-18  0.8
2019 Armour CR, Nayfach S, Pollard KS, Sharpton TJ. A Metagenomic Meta-analysis Reveals Functional Signatures of Health and Disease in the Human Gut Microbiome. Msystems. 4. PMID 31098399 DOI: 10.1128/mSystems.00332-18  0.8
2018 Gaulke CA, Arnold HK, Humphreys IR, Kembel SW, O'Dwyer JP, Sharpton TJ. Ecophylogenetics Clarifies the Evolutionary Association between Mammals and Their Gut Microbiota. Mbio. 9. PMID 30206171 DOI: 10.1128/mBio.01348-18  0.32
2017 Sharpton T, Lyalina S, Luong J, Pham J, Deal EM, Armour C, Gaulke C, Sanjabi S, Pollard KS. Development of Inflammatory Bowel Disease Is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice. Msystems. 2. PMID 28904997 DOI: 10.1128/mSystems.00036-17  0.8
2016 Gaulke CA, Barton CL, Proffitt S, Tanguay RL, Sharpton TJ. Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish. Plos One. 11: e0154632. PMID 27191725 DOI: 10.1371/journal.pone.0154632  0.68
2016 Kent ML, Watral VG, Kirchoff NS, Spagnoli ST, Sharpton TJ. Effects of Subclinical Mycobacterium chelonae Infections on Fecundity and Embryo Survival in Zebrafish. Zebrafish. PMID 27031171 DOI: 10.1089/zeb.2015.1204  0.68
2015 Nayfach S, Bradley PH, Wyman SK, Laurent TJ, Williams A, Eisen JA, Pollard KS, Sharpton TJ. Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes. Plos Computational Biology. 11: e1004573. PMID 26565399 DOI: 10.1371/journal.pcbi.1004573  0.68
2015 Sharpton TJ, Gaulke CA. Modeling the Context-Dependent Associations between the Gut Microbiome, Its Environment, and Host Health. Mbio. 6: e01367-15. PMID 26350971 DOI: 10.1128/mBio.01367-15  0.68
2015 O'Dwyer JP, Kembel SW, Sharpton TJ. Backbones of evolutionary history test biodiversity theory for microbes. Proceedings of the National Academy of Sciences of the United States of America. PMID 26106159 DOI: 10.1073/pnas.1419341112  0.68
2015 Quandt CA, Kohler A, Hesse CN, Sharpton TJ, Martin F, Spatafora JW. Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome. Environmental Microbiology. PMID 25753751 DOI: 10.1111/1462-2920.12840  0.68
2014 Skewes-Cox P, Sharpton TJ, Pollard KS, DeRisi JL. Profile hidden Markov models for the detection of viruses within metagenomic sequence data. Plos One. 9: e105067. PMID 25140992 DOI: 10.1371/journal.pone.0105067  0.68
2014 Kent ML, Soderlund K, Thomann E, Schreck CB, Sharpton TJ. Post-mortem sporulation of Ceratomyxa shasta (Myxozoa) after death in adult Chinook salmon. The Journal of Parasitology. 100: 679-83. PMID 24725089 DOI: 10.1645/13-490.1  0.68
2014 Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, et al. Exome capture from saliva produces high quality genomic and metagenomic data. Bmc Genomics. 15: 262. PMID 24708091 DOI: 10.1186/1471-2164-15-262  0.68
2014 Finucane MM, Sharpton TJ, Laurent TJ, Pollard KS. A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter. Plos One. 9: e84689. PMID 24416266 DOI: 10.1371/journal.pone.0084689  0.68
2013 Ladau J, Sharpton TJ, Finucane MM, Jospin G, Kembel SW, O'Dwyer J, Koeppel AF, Green JL, Pollard KS. Global marine bacterial diversity peaks at high latitudes in winter. The Isme Journal. 7: 1669-77. PMID 23514781 DOI: 10.1038/ismej.2013.37  0.68
2012 Sharpton TJ, Jospin G, Wu D, Langille MG, Pollard KS, Eisen JA. Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource. Bmc Bioinformatics. 13: 264. PMID 23061897 DOI: 10.1186/1471-2105-13-264  0.68
2012 Whiston E, Zhang Wise H, Sharpton TJ, Jui G, Cole GT, Taylor JW. Comparative transcriptomics of the saprobic and parasitic growth phases in Coccidioides spp. Plos One. 7: e41034. PMID 22911737 DOI: 10.1371/journal.pone.0041034  0.68
2012 Wylie KM, Truty RM, Sharpton TJ, Mihindukulasuriya KA, Zhou Y, Gao H, Sodergren E, Weinstock GM, Pollard KS. Novel bacterial taxa in the human microbiome. Plos One. 7: e35294. PMID 22719826 DOI: 10.1371/journal.pone.0035294  0.68
2011 Sharpton TJ, Riesenfeld SJ, Kembel SW, Ladau J, O'Dwyer JP, Green JL, Eisen JA, Pollard KS. PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data. Plos Computational Biology. 7: e1001061. PMID 21283775 DOI: 10.1371/journal.pcbi.1001061  0.68
2010 Neafsey DE, Barker BM, Sharpton TJ, Stajich JE, Park DJ, Whiston E, Hung CY, McMahan C, White J, Sykes S, Heiman D, Young S, Zeng Q, Abouelleil A, Aftuck L, et al. Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control. Genome Research. 20: 938-46. PMID 20516208 DOI: 10.1101/gr.103911.109  0.68
2009 Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, Hung CY, McMahan C, Muszewska A, Grynberg M, Mandel MA, et al. Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Research. 19: 1722-31. PMID 19717792 DOI: 10.1101/gr.087551.108  0.68
2008 Sharpton TJ, Neafsey DE, Galagan JE, Taylor JW. Mechanisms of intron gain and loss in Cryptococcus. Genome Biology. 9: R24. PMID 18234113 DOI: 10.1186/gb-2008-9-1-r24  0.68
2006 Sharpton TJ, Jhaveri AA. Leveraging the knowledge of our peers: online communities hold the promise to enhance scientific research. Plos Biology. 4: e199. PMID 16752946 DOI: 10.1371/journal.pbio.0040199  0.68
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