Sandrine Dudoit, PhD - Publications

Affiliations: 
Statistics University of California, Berkeley, Berkeley, CA 
Area:
Statistical methods, Genomics, R,
Website:
http://www.stat.berkeley.edu/~sandrine/

67/89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Brann DH, Tsukahara T, Weinreb C, Lipovsek M, Van den Berge K, Gong B, Chance R, Macaulay IC, Chou HJ, Fletcher RB, Das D, Street K, de Bezieux HR, Choi YG, Risso D, ... Dudoit S, et al. Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. Science Advances. 6. PMID 32937591 DOI: 10.1126/sciadv.abc5801  0.72
2019 Cole MB, Risso D, Wagner A, DeTomaso D, Ngai J, Purdom E, Dudoit S, Yosef N. Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq. Cell Systems. 8: 315-328.e8. PMID 31022373 DOI: 10.1016/j.cels.2019.03.010  0.72
2018 Risso D, Purvis L, Fletcher RB, Das D, Ngai J, Dudoit S, Purdom E. clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. Plos Computational Biology. 14: e1006378. PMID 30180157 DOI: 10.1371/journal.pcbi.1006378  0.72
2018 Street K, Risso D, Fletcher RB, Das D, Ngai J, Yosef N, Purdom E, Dudoit S. Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics. Bmc Genomics. 19: 477. PMID 29914354 DOI: 10.1186/s12864-018-4772-0  0.72
2017 Gadye L, Das D, Sanchez MA, Street K, Baudhuin A, Wagner A, Cole MB, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J, Fletcher RB. Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities. Cell Stem Cell. 21: 775-790.e9. PMID 29174333 DOI: 10.1016/j.stem.2017.10.014  0.72
2017 Gadye L, Das D, Sanchez MA, Street K, Baudhuin A, Wagner A, Cole MB, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J, Fletcher RB. Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities. Cell Stem Cell. 21: 775-790.e9. PMID 29174333 DOI: 10.1016/j.stem.2017.10.014  0.72
2017 Perraudeau F, Risso D, Street K, Purdom E, Dudoit S. Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference. F1000research. 6: 1158. PMID 28868140 DOI: 10.12688/f1000research.12122.1  0.72
2017 Fletcher RB, Das D, Gadye L, Street KN, Baudhuin A, Wagner A, Cole MB, Flores Q, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J. Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution. Cell Stem Cell. PMID 28506465 DOI: 10.1016/j.stem.2017.04.003  0.72
2014 Risso D, Ngai J, Speed TP, Dudoit S. Normalization of RNA-seq data using factor analysis of control genes or samples. Nature Biotechnology. 32: 896-902. PMID 25150836 DOI: 10.1038/nbt.2931  0.72
2014 Ferreira T, Wilson SR, Choi YG, Risso D, Dudoit S, Speed TP, Ngai J. Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron. Neuron. 81: 847-59. PMID 24559675 DOI: 10.1016/j.neuron.2014.01.001  0.72
2014 Cleynen A, Dudoit S, Robin S. Comparing Segmentation Methods for Genome Annotation Based on RNA-Seq Data Journal of Agricultural, Biological, and Environmental Statistics. 19: 101-118. DOI: 10.1007/s13253-013-0159-5  0.72
2013 Steijger T, Abril JF, Engström PG, Kokocinski F, Hubbard TJ, Guigó R, Harrow J, Bertone P. Assessment of transcript reconstruction methods for RNA-seq. Nature Methods. 10: 1177-84. PMID 24185837 DOI: 10.1038/nmeth.2714  0.72
2012 Labbe A, Dudoit S. Special issue on computational statistical methods for genomics and systems biology. Statistical Applications in Genetics and Molecular Biology. 11. PMID 22499689 DOI: 10.2202/1544-6115.1759  0.72
2012 Jacob L, Neuvial P, Dudoit S. More power via graph-structured tests for differential expression of gene networks Annals of Applied Statistics. 6: 561-600. DOI: 10.1214/11-AOAS528  0.72
2011 Risso D, Schwartz K, Sherlock G, Dudoit S. GC-content normalization for RNA-Seq data. Bmc Bioinformatics. 12: 480. PMID 22177264 DOI: 10.1186/1471-2105-12-480  0.72
2011 Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, ... ... Dudoit S, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/nature09715  0.72
2011 Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR. Conservation of an RNA regulatory map between Drosophila and mammals. Genome Research. 21: 193-202. PMID 20921232 DOI: 10.1101/gr.108662.110  0.72
2010 Hansen KD, Brenner SE, Dudoit S. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Research. 38: e131. PMID 20395217 DOI: 10.1093/nar/gkq224  0.72
2010 Bullard JH, Mostovoy Y, Dudoit S, Brem RB. Polygenic and directional regulatory evolution across pathways in Saccharomyces. Proceedings of the National Academy of Sciences of the United States of America. 107: 5058-63. PMID 20194736 DOI: 10.1073/pnas.0912959107  0.72
2010 Bullard JH, Purdom E, Hansen KD, Dudoit S. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. Bmc Bioinformatics. 11: 94. PMID 20167110 DOI: 10.1186/1471-2105-11-94  0.72
2009 Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE. Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. Plos Genetics. 5: e1000525. PMID 19543372 DOI: 10.1371/journal.pgen.1000525  0.72
2009 Osborne EA, Dudoit S, Rine J. The establishment of gene silencing at single-cell resolution. Nature Genetics. 41: 800-6. PMID 19543267 DOI: 10.1038/ng.402  0.72
2009 Chae L, Sudat S, Dudoit S, Zhu T, Luan S. Diverse transcriptional programs associated with environmental stress and hormones in the Arabidopsis receptor-like kinase gene family. Molecular Plant. 2: 84-107. PMID 19529822 DOI: 10.1093/mp/ssn083  0.72
2009 Durinck S, Bullard J, Spellman PT, Dudoit S. GenomeGraphs: integrated genomic data visualization with R. Bmc Bioinformatics. 10: 2. PMID 19123956 DOI: 10.1186/1471-2105-10-2  0.72
2008 Lee A, Hansen KD, Bullard J, Dudoit S, Sherlock G. Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species. Plos Genetics. 4: e1000299. PMID 19096707 DOI: 10.1371/journal.pgen.1000299  0.72
2008 Dudoit S, Gilbert HN, van der Laan MJ. Resampling-based empirical Bayes multiple testing procedures for controlling generalized tail probability and expected value error rates: focus on the false discovery rate and simulation study. Biometrical Journal. Biometrische Zeitschrift. 50: 716-44. PMID 18932138 DOI: 10.1002/bimj.200710473  0.6
2008 Durbin B, Dudoit S, van der Laan MJ. A deletion/substitution/addition algorithm for classification neural networks, with applications to biomedical data Journal of Statistical Planning and Inference. 138: 464-488. DOI: 10.1016/j.jspi.2007.06.002  0.72
2008 Shilane D, Martikainen J, Dudoit S, Ovaska SJ. A general framework for statistical performance comparison of evolutionary computation algorithms Information Sciences. 178: 2870-2879. DOI: 10.1016/j.ins.2008.03.007  0.72
2007 Barrier A, Boelle PY, Lemoine A, Flahault A, Dudoit S, Huguier M. [Gene expression profiling in colon cancer]. Bulletin De L'AcadéMie Nationale De MéDecine. 191: 1091-101; discussion. PMID 18402166  0.72
2007 Barrier A, Roser F, Boëlle PY, Franc B, Tse C, Brault D, Lacaine F, Houry S, Callard P, Penna C, Debuire B, Flahault A, Dudoit S, Lemoine A. Prognosis of stage II colon cancer by non-neoplastic mucosa gene expression profiling. Oncogene. 26: 2642-8. PMID 17043639 DOI: 10.1038/sj.onc.1210060  0.72
2007 Barrier A, Boelle PY, Houry S, Dudoit S, Lemoine A. In reply [6] Journal of Clinical Oncology. 25: 2862-2863. DOI: 10.1200/JCO.2006.10.4596  0.72
2006 Rubin D, Dudoit S, van der Laan M. A method to increase the power of multiple testing procedures through sample splitting. Statistical Applications in Genetics and Molecular Biology. 5: Article19. PMID 17049030 DOI: 10.2202/1544-6115.1148  0.72
2006 Barrier A, Boelle PY, Roser F, Gregg J, Tse C, Brault D, Lacaine F, Houry S, Huguier M, Franc B, Flahault A, Lemoine A, Dudoit S. Stage II colon cancer prognosis prediction by tumor gene expression profiling. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 24: 4685-91. PMID 16966692 DOI: 10.1200/JCO.2005.05.0229  0.72
2006 Keleş S, van der Laan MJ, Dudoit S, Cawley SE. Multiple testing methods for ChIP-Chip high density oligonucleotide array data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 579-613. PMID 16706714 DOI: 10.1089/cmb.2006.13.579  0.6
2006 Wang Y, Zhao LP, Dudoit S. A fine-scale linkage-disequilibrium measure based on length of haplotype sharing. American Journal of Human Genetics. 78: 615-28. PMID 16532392 DOI: 10.1086/502632  0.72
2006 Chiappini F, Barrier A, Saffroy R, Domart MC, Dagues N, Azoulay D, Sebagh M, Franc B, Chevalier S, Debuire B, Dudoit S, Lemoine A. Exploration of global gene expression in human liver steatosis by high-density oligonucleotide microarray. Laboratory Investigation; a Journal of Technical Methods and Pathology. 86: 154-65. PMID 16344856 DOI: 10.1038/labinvest.3700374  0.72
2006 Hothorn T, Bühlmann P, Dudoit S, Molinaro A, van der Laan MJ. Survival ensembles. Biostatistics (Oxford, England). 7: 355-73. PMID 16344280 DOI: 10.1093/biostatistics/kxj011  0.6
2005 Barrier A, Boelle PY, Lemoine A, Tse C, Brault D, Chiappini F, Lacaine F, Houry S, Huguier M, Flahault A, Dudoit S. Gene expression profiling of nonneoplastic mucosa may predict clinical outcome of colon cancer patients. Diseases of the Colon and Rectum. 48: 2238-48. PMID 16228831 DOI: 10.1007/s10350-005-0175-9  0.72
2005 Barrier A, Olaya N, Chiappini F, Roser F, Scatton O, Artus C, Franc B, Dudoit S, Flahault A, Debuire B, Azoulay D, Lemoine A. Ischemic preconditioning modulates the expression of several genes, leading to the overproduction of IL-1Ra, iNOS, and Bcl-2 in a human model of liver ischemia-reperfusion. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 19: 1617-26. PMID 16195370 DOI: 10.1096/fj.04-3445com  0.72
2005 Barrier A, Lemoine A, Boelle PY, Tse C, Brault D, Chiappini F, Breittschneider J, Lacaine F, Houry S, Huguier M, Van der Laan MJ, Speed T, Debuire B, Flahault A, Dudoit S. Colon cancer prognosis prediction by gene expression profiling. Oncogene. 24: 6155-64. PMID 16091735 DOI: 10.1038/sj.onc.1208984  0.6
2005 Dudoit S, Van Der Laan MJ. Asymptotics of cross-validated risk estimation in estimator selection and performance assessment Statistical Methodology. 2: 131-154. DOI: 10.1016/j.stamet.2005.02.003  0.72
2004 van der Laan MJ, Dudoit S, Keles S. Asymptotic optimality of likelihood-based cross-validation. Statistical Applications in Genetics and Molecular Biology. 3: Article4. PMID 16646820 DOI: 10.2202/1544-6115.1036  0.6
2004 van der Laan MJ, Dudoit S, Pollard KS. Augmentation procedures for control of the generalized family-wise error rate and tail probabilities for the proportion of false positives. Statistical Applications in Genetics and Molecular Biology. 3: Article15. PMID 16646793 DOI: 10.2202/1544-6115.1042  0.6
2004 van der Laan MJ, Dudoit S, Pollard KS. Multiple testing. Part II. Step-down procedures for control of the family-wise error rate. Statistical Applications in Genetics and Molecular Biology. 3: Article14. PMID 16646792 DOI: 10.2202/1544-6115.1041  0.6
2004 Dudoit S, van der Laan MJ, Pollard KS. Multiple testing. Part I. Single-step procedures for control of general type I error rates. Statistical Applications in Genetics and Molecular Biology. 3: Article13. PMID 16646791 DOI: 10.2202/1544-6115.1040  0.6
2004 Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biology. 5: R80. PMID 15461798 DOI: 10.1186/gb-2004-5-10-r80  0.72
2004 Kele? S, Van Der Laan M, Dudoit S. Asymptotically optimal model selection method with right censored outcomes Bernoulli. 10: 1011-1037. DOI: 10.3150/bj/1106314848  0.72
2004 Molinaro AM, Dudoit S, Van Der Laan MJ. Tree-based multivariate regression and density estimation with right-censored data Journal of Multivariate Analysis. 90: 154-177. DOI: 10.1016/j.jmva.2004.02.003  0.72
2003 Keles S, van der Laan MJ, Dudoit S, Xing B, Eisen MB. Supervised detection of regulatory motifs in DNA sequences. Statistical Applications in Genetics and Molecular Biology. 2: Article5. PMID 16646783 DOI: 10.2202/1544-6115.1015  0.6
2003 Dudoit S, Fridlyand J. Bagging to improve the accuracy of a clustering procedure. Bioinformatics (Oxford, England). 19: 1090-9. PMID 12801869 DOI: 10.1093/bioinformatics/btg038  0.72
2003 Dudoit S, Gentleman RC, Quackenbush J. Open source software for the analysis of microarray data. Biotechniques. 45-51. PMID 12664684  0.72
2003 Dudoit S, Shaffer JP, Boldrick JC. Multiple hypothesis testing in microarray experiments Statistical Science. 18: 71-103. DOI: 10.1214/ss/1056397487  0.72
2003 Ge Y, Dudoit S, Speed TP, Glonek G, Solomon P, Grant GR, Kendziorski CM, Maindonald JH, Storey JD, Westfall PH. Resampling-based multiple testing for microarray data analysis Test. 12: 1-77.  0.72
2002 Chang HY, Chi JT, Dudoit S, Bondre C, van de Rijn M, Botstein D, Brown PO. Diversity, topographic differentiation, and positional memory in human fibroblasts. Proceedings of the National Academy of Sciences of the United States of America. 99: 12877-82. PMID 12297622 DOI: 10.1073/pnas.162488599  0.72
2002 Dudoit S, Fridlyand J. A prediction-based resampling method for estimating the number of clusters in a dataset. Genome Biology. 3: RESEARCH0036. PMID 12184810  0.72
2002 Chen X, Cheung ST, So S, Fan ST, Barry C, Higgins J, Lai KM, Ji J, Dudoit S, Ng IO, Van De Rijn M, Botstein D, Brown PO. Gene expression patterns in human liver cancers. Molecular Biology of the Cell. 13: 1929-39. PMID 12058060 DOI: 10.1091/mbc.02-02-0023.  0.72
2002 Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research. 30: e15. PMID 11842121 DOI: 10.1117/12.427982  0.72
2002 Boldrick JC, Alizadeh AA, Diehn M, Dudoit S, Liu CL, Belcher CE, Botstein D, Staudt LM, Brown PO, Relman DA. Stereotyped and specific gene expression programs in human innate immune responses to bacteria. Proceedings of the National Academy of Sciences of the United States of America. 99: 972-7. PMID 11805339 DOI: 10.1073/pnas.231625398  0.72
2002 Yang YH, Buckley MJ, Dudoit S, Speed TP. Comparison of methods for image analysis on cDNA microarray data Journal of Computational and Graphical Statistics. 11: 108-136. DOI: 10.1198/106186002317375640  0.72
2002 Dudoit S, Fridlyand J, Speed TP. Comparison of discrimination methods for the classification of tumors using gene expression data Journal of the American Statistical Association. 97: 77-86. DOI: 10.1198/016214502753479248  0.72
2002 Dudoit S, Yang YH, Callow MJ, Speed TP. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments Statistica Sinica. 12: 111-139.  0.72
2001 Goldstein DR, Dudoit S, Speed TP. Power and robustness of a score test for linkage analysis of quantitative traits using identity by descent data on sib pairs. Genetic Epidemiology. 20: 415-31. PMID 11319783 DOI: 10.1002/gepi.1011  0.72
2000 Dudoit S, Speed TP. A score test for the linkage analysis of qualitative and quantitative traits based on identity by descent data from sib-pairs. Biostatistics (Oxford, England). 1: 1-26. PMID 12933522 DOI: 10.1093/biostatistics/1.1.1  0.52
2000 Callow MJ, Dudoit S, Gong EL, Speed TP, Rubin EM. Microarray expression profiling identifies genes with altered expression in HDL-deficient mice. Genome Research. 10: 2022-9. PMID 11116096 DOI: 10.1101/gr.10.12.2022  0.72
2000 Goldstein DR, Dudoit S, Speed TP. Power of a score test for quantitative trait linkage analysis of relative pairs. Genetic Epidemiology. 19: S85-91. PMID 11055375 DOI: 10.1002/1098-2272(2000)19:1+<::AID-GEPI13>3.0.CO;2-7  0.52
2000 Goldstein DR, Dudoit S, Speed TP. Robust transmission regression models for linkage and association Genetic Epidemiology. 19: S78-S84. PMID 11055374 DOI: 10.1002/1098-2272(2000)19:1+<::AID-GEPI12>3.0.CO;2-A  0.72
1999 Dudoit S, Speed TP. A score test for linkage using identity by descent data from sibships Annals of Statistics. 27: 943-986.  0.72
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2018 Perttula K, Schiffman C, Edmands WMB, Petrick L, Grigoryan H, Cai X, Gunter MJ, Naccarati A, Polidoro S, Dudoit S, Vineis P, Rappaport SM. Untargeted lipidomic features associated with colorectal cancer in a prospective cohort. Bmc Cancer. 18: 996. PMID 30340609 DOI: 10.1186/s12885-018-4894-4  0.2
2019 Grigoryan H, Schiffman C, Gunter MJ, Naccarati A, Polidoro S, Dagnino S, Dudoit S, Vineis P, Rappaport SM. Cys34 Adductomics Links Colorectal Cancer with the Gut Microbiota and Redox Biology. Cancer Research. PMID 31641032 DOI: 10.1158/0008-5472.CAN-19-1529  0.16
2019 Yano Y, Schiffman C, Grigoryan H, Hayes J, Edmands W, Petrick L, Whitehead T, Metayer C, Dudoit S, Rappaport S. Untargeted adductomics of newborn dried blood spots identifies modifications to human serum albumin associated with childhood leukemia. Leukemia Research. 88: 106268. PMID 31760269 DOI: 10.1016/j.leukres.2019.106268  0.12
2019 Petrick LM, Schiffman C, Edmands WMB, Yano Y, Perttula K, Whitehead T, Metayer C, Wheelock CE, Arora M, Grigoryan H, Carlsson H, Dudoit S, Rappaport SM. Metabolomics of Neonatal Blood Spots Reveal Distinct Phenotypes of Pediatric Acute Lymphoblastic Leukemia and Potential Effects of Early-life Nutrition. Cancer Letters. PMID 30904619 DOI: 10.1016/j.canlet.2019.03.007  0.12
2020 Boileau P, Hejazi NS, Dudoit S. Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis. Bioinformatics (Oxford, England). PMID 32176249 DOI: 10.1093/bioinformatics/btaa176  0.08
2020 Van den Berge K, Roux de Bézieux H, Street K, Saelens W, Cannoodt R, Saeys Y, Dudoit S, Clement L. Trajectory-based differential expression analysis for single-cell sequencing data. Nature Communications. 11: 1201. PMID 32139671 DOI: 10.1038/s41467-020-14766-3  0.08
2019 Yano Y, Grigoryan H, Schiffman C, Edmands W, Petrick L, Hall K, Whitehead T, Metayer C, Dudoit S, Rappaport S. Untargeted adductomics of Cys34 modifications to human serum albumin in newborn dried blood spots. Analytical and Bioanalytical Chemistry. PMID 30783713 DOI: 10.1007/s00216-019-01675-8  0.08
2019 Risso D, Perraudeau F, Gribkova S, Dudoit S, Vert JP. Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data. Nature Communications. 10: 646. PMID 30718493 DOI: 10.1038/s41467-019-08614-2  0.08
2018 Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications. Genome Biology. 19: 24. PMID 29478411 DOI: 10.1186/s13059-018-1406-4  0.08
2018 Risso D, Perraudeau F, Gribkova S, Dudoit S, Vert JP. A general and flexible method for signal extraction from single-cell RNA-seq data. Nature Communications. 9: 284. PMID 29348443 DOI: 10.1038/s41467-017-02554-5  0.08
2017 Vallejos CA, Risso D, Scialdone A, Dudoit S, Marioni JC. Normalizing single-cell RNA sequencing data: challenges and opportunities. Nature Methods. PMID 28504683 DOI: 10.1038/nmeth.4292  0.08
2020 Boileau P, Hejazi N, Dudoit S. scPCA: A toolbox for sparse contrastive principal component analysis in R Journal of Open Source Software. 5: 2079. DOI: 10.21105/joss.02079  0.04
2019 Schiffman C, Petrick L, Perttula K, Yano Y, Carlsson H, Whitehead T, Metayer C, Hayes J, Rappaport S, Dudoit S. Filtering procedures for untargeted LC-MS metabolomics data. Bmc Bioinformatics. 20: 334. PMID 31200644 DOI: 10.1186/s12859-019-2871-9  0.04
2017 Petrick L, Edmands W, Schiffman C, Grigoryan H, Perttula K, Yano Y, Dudoit S, Whitehead T, Metayer C, Rappaport S. An untargeted metabolomics method for archived newborn dried blood spots in epidemiologic studies. Metabolomics : Official Journal of the Metabolomic Society. 13. PMID 29706849 DOI: 10.1007/s11306-016-1153-z  0.04
2018 Petrick L, Schiffman C, Edmands WM, Yano Y, Perttula K, Whitehead T, Metayer C, Carlsson H, Grigoryan H, Dudoit S, Rappaport S. Untargeted Metabolomics of Archived Dried Blood Spots Reveals Lipid Modulation at Birth Associated with Pediatric Acute Lymphoblastic Leukemia Isee Conference Abstracts. 2018. DOI: 10.1289/isesisee.2018.o03.03.21  0.01
2007 Barrier A, Boelle P, Brault D, Houry S, Lacaine F, Flahault A, Dudoit S, Lemoine A. Stage III colon cancer prognosis prediction by gene expression profiling Journal of Clinical Oncology. 25: 10590-10590. DOI: 10.1200/jco.2007.25.18_suppl.10590  0.01
2007 Barrier A, Boelle P, Lemoine A, Flahault A, Dudoit S, Huguier M. Génomique somatique et pronostic des cancers colorectaux Bulletin De L'AcadéMie Nationale De MéDecine. 191: 1091-1103. DOI: 10.1016/s0001-4079(19)32981-4  0.01
2006 Laan MJvd, Dudoit S, Vaart AWvd. The cross-validated adaptive epsilon-net estimator Statistics & Decisions. 24. DOI: 10.1524/stnd.2006.24.3.373  0.01
2006 Vaart AWvd, Dudoit S, Laan MJvd. Oracle inequalities for multi-fold cross validation Statistics & Decisions. 24. DOI: 10.1524/stnd.2006.24.3.351  0.01
2006 Barrier A, Brault D, Houry S, Dudoit S, Lemoine A, Flahault A, Boelle P. Prognosis prediction of stage II colon cancer by gene expression profiling Journal of Clinical Oncology. 24: 3565-3565. DOI: 10.1200/jco.2006.24.18_suppl.3565  0.01
2003 Dudoit S, van der Laan MJ, Keleş S, Molinaro AM, Sinisi SE, Teng SL. Loss-based estimation with cross-validation Acm Sigkdd Explorations Newsletter. 5: 56-68. DOI: 10.1145/980972.980981  0.01
1999 Dudoit S. Statistical methods for the characterisation of tumour types using cDNA microarray data Nature Genetics. 23: 42-42. DOI: 10.1038/14296  0.01
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