☰

Arnau Montagud, PhD - Publications

Affiliations: 
2007-2012 Departamento de Matemática Aplicada Universidad Politecnica de Valencia (Spain) 
 2012-2014 Instituto Universitario de Matemática Pura y Aplicada (IUMPA) Universidad Politecnica de Valencia (Spain) 
 2014-2019 U900 Institut Curie, Paris, France, Paris-5E-Arrondissement, Île-de-France, France 
 2019- Life Sciences Barcelona Supercomputing Center, Barcelona, Catalunya, Spain 
Area:
Systems Biology, Computational Biology, Metabolic Engineering
Website:
https://arnaumontagud.netlify.com/
Tree Info Similar researchers PubMed Report error

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie ME, Funahashi A, Acencio ML, Hemedan A, Aichem M, Klein K, Czauderna T, Burtscher F, Yamada TG, Hiki Y, ... ... Montagud A, et al. Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches. Frontiers in Immunology. 14: 1282859. PMID 38414974 DOI: 10.3389/fimmu.2023.1282859  0.767
2023 Ponce-de-Leon M, Montagud A, Noël V, Meert A, Pradas G, Barillot E, Calzone L, Valencia A. PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks. Npj Systems Biology and Applications. 9: 54. PMID 37903760 DOI: 10.1038/s41540-023-00314-4  0.801
2023 Ruscone M, Montagud A, Chavrier P, Destaing O, Bonnet I, Zinovyev A, Barillot E, Noël V, Calzone L. Multiscale model of the different modes of cancer cell invasion. Bioinformatics (Oxford, England). PMID 37289551 DOI: 10.1093/bioinformatics/btad374  0.769
2022 Ponce-de-Leon M, Montagud A, Akasiadis C, Schreiber J, Ntiniakou T, Valencia A. Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth. Frontiers in Molecular Biosciences. 9: 836794. PMID 35463947 DOI: 10.3389/fmolb.2022.836794  0.435
2022 Montagud A, Béal J, Tobalina L, Traynard P, Subramanian V, Szalai B, Alföldi R, Puskás L, Valencia A, Barillot E, Saez-Rodriguez J, Calzone L. Patient-specific Boolean models of signalling networks guide personalised treatments. Elife. 11. PMID 35164900 DOI: 10.7554/eLife.72626  0.78
2021 Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, ... ... Montagud A, et al. COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 17: e10851. PMID 34939300 DOI: 10.15252/msb.202110851  0.742
2021 Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, ... ... Montagud A, et al. COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 17: e10387. PMID 34664389 DOI: 10.15252/msb.202110387  0.776
2021 Santus E, Marino N, Cirillo D, Chersoni E, Montagud A, Santuccione Chada A, Valencia A, Hughes K, Lindvall C. AI-aided Precision Medicine against COVID-19: Strategic Areas of Research and Development. Journal of Medical Internet Research. PMID 33560998 DOI: 10.2196/22453  0.746
2019 Gamermann D, Montagud A, Conejero JA, Fernández de Córdoba P, Urchueguía JF. Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction. Plos One. 14: e0221631. PMID 31487289 DOI: 10.1371/Journal.Pone.0221631  0.771
2018 Béal J, Montagud A, Traynard P, Barillot E, Calzone L. Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients. Frontiers in Physiology. 9: 1965. PMID 30733688 DOI: 10.3389/Fphys.2018.01965  0.792
2018 Forget A, Martignetti L, Puget S, Calzone L, Brabetz S, Picard D, Montagud A, Liva S, Sta A, Dingli F, Arras G, Rivera J, Loew D, Besnard A, Lacombe J, et al. Aberrant ERBB4-SRC Signaling as a Hallmark of Group 4 Medulloblastoma Revealed by Integrative Phosphoproteomic Profiling. Cancer Cell. 34: 379-395.e7. PMID 30205043 DOI: 10.1016/J.Ccell.2018.08.002  0.769
2018 Letort G, Montagud A, Stoll G, Heiland R, Barillot E, Macklin P, Zinovyev A, Calzone L. PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling. Bioinformatics (Oxford, England). PMID 30169736 DOI: 10.1093/Bioinformatics/Bty766  0.779
2017 Montagud A, Traynard P, Martignetti L, Bonnet E, Barillot E, Zinovyev A, Calzone L. Conceptual and computational framework for logical modelling of biological networks deregulated in diseases. Briefings in Bioinformatics. PMID 29237040 DOI: 10.1093/Bib/Bbx163  0.798
2017 Forget A, Loredana M, Brabetz S, Picard D, Puget S, Calzone L, Poullet P, Montagud A, Liva S, Dingli F, Arras G, Yu H, Mercier A, Pouponnot C, Loew D, et al. CSIG-15. PROTEOMIC AND PHOSPHOPROTEOMIC ANALYSIS OF HUMAN MEDULLOBLASTOMA REVEALS DISTINCT ACTIVATED PATHWAYS BETWEEN SUBGROUPS Neuro-Oncology. 19: vi52-vi53. DOI: 10.1093/Neuonc/Nox168.209  0.763
2015 Pinto F, Pacheco CC, Oliveira P, Montagud A, Landels A, Couto N, Wright PC, Urchueguía JF, Tamagnini P. Improving a Synechocystis-based photoautotrophic chassis through systematic genome mapping and validation of neutral sites. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 26490728 DOI: 10.1093/Dnares/Dsv024  0.772
2015 Montagud A, Gamermann D, Fernández de Córdoba P, Urchueguía JF. Synechocystis sp. PCC6803 metabolic models for the enhanced production of hydrogen. Critical Reviews in Biotechnology. 35: 184-98. PMID 24090244 DOI: 10.3109/07388551.2013.829799  0.768
2014 Triana J, Montagud A, Siurana M, Fuente D, Urchueguía A, Gamermann D, Torres J, Tena J, de Córdoba PF, Urchueguía JF. Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942. Metabolites. 4: 680-98. PMID 25141288 DOI: 10.3390/Metabo4030680  0.741
2014 Gamermann D, Montagud A, Conejero JA, Urchueguía JF, de Córdoba PF. New approach for phylogenetic tree recovery based on genome-scale metabolic networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 21: 508-19. PMID 24611553 DOI: 10.1089/Cmb.2013.0150  0.805
2012 Reyes R, Gamermann D, Montagud A, Fuente D, Triana J, Urchueguía JF, de Córdoba PF. Automation on the generation of genome-scale metabolic models. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 1295-306. PMID 23210477 DOI: 10.1089/Cmb.2012.0183  0.783
2012 Lopo M, Montagud A, Navarro E, Cunha I, Zille A, de Córdoba PF, Moradas-Ferreira P, Tamagnini P, Urchueguía JF. Experimental and modeling analysis of Synechocystis sp. PCC 6803 growth. Journal of Molecular Microbiology and Biotechnology. 22: 71-82. PMID 22508451 DOI: 10.1159/000336850  0.759
2012 Pinto F, van Elburg KA, Pacheco CC, Lopo M, Noirel J, Montagud A, Urchueguía JF, Wright PC, Tamagnini P. Construction of a chassis for hydrogen production: Physiological and molecular characterization of a synechocystis sp. PCC 6803 mutant lacking a functional bidirectional hydrogenase Microbiology. 158: 448-464. PMID 22096147 DOI: 10.1099/Mic.0.052282-0  0.795
2012 Gamermann D, Montagud A, Conejero A, Reyes R, Fuente D, Córdoba PFd, Urchueguía J. Phylogenic tree reconstruction through the Kruskal algorithm F1000research. 3. DOI: 10.7490/F1000Research.1092528.1  0.762
2012 Gamermann D, Montagud A, Aparicio P, Navarro E, Triana J, Villatoro FR, UrchueguÍa JF, De CÓrdoba PF. A modular synthetic device to calibrate promoters Journal of Biological Systems. 20: 37-55. DOI: 10.1142/S0218339012500015  0.742
2011 Belda E, Pedrola L, Peretó J, Martínez-Blanch JF, Montagud A, Navarro E, Urchueguía J, Ramón D, Moya A, Porcar M. Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis. Plos One. 6: e21751. PMID 21738787 DOI: 10.1371/Journal.Pone.0021751  0.77
2011 Vilanova C, Hueso A, Palanca C, Marco G, Pitarch M, Otero E, Crespo J, Szablowski J, Rivera S, Domínguez-Escribà L, Navarro E, Montagud A, de Córdoba PF, González A, Ariño J, et al. Aequorin-expressing yeast emits light under electric control. Journal of Biotechnology. 152: 93-5. PMID 21291926 DOI: 10.1016/J.Jbiotec.2011.01.005  0.421
2011 Montagud A, Zelezniak A, Navarro E, de Córdoba PF, Urchueguía JF, Patil KR. Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803. Biotechnology Journal. 6: 330-42. PMID 21226012 DOI: 10.1002/Biot.201000109  0.806
2010 Montagud A, Navarro E, Fernández de Córdoba P, Urchueguía JF, Patil KR. Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium. Bmc Systems Biology. 4: 156. PMID 21083885 DOI: 10.1186/1752-0509-4-156  0.789
2009 Delás J, Notari M, Forés J, Pechuan J, Porcar M, Navarro E, Montagud A, Baguena M, Peretó J, de Córdoba PF, González-Barroso MM, Rial E, Moya A, Urchueguía J. Yeast cultures with UCP1 uncoupling activity as a heating device. New Biotechnology. 26: 300-6. PMID 19761877 DOI: 10.1016/J.Nbt.2009.09.005  0.755
2009 Navarro E, Montagud A, Fernández de Córdoba P, Urchueguía J. Metabolic flux analysis of the hydrogen production potential in Synechocystis sp. PCC6803 International Journal of Hydrogen Energy. 34: 8828-8838. DOI: 10.1016/J.Ijhydene.2009.08.036  0.776
2007 Rodrigo G, Carrera J, Gimenez D, Fernandez-de-Cordoba P, Salgado J, Montagud A, Urchueguia J, Aroca M, Mata C, Ferrando A, Navarrete C, Tortosa P, Baguena M, Jaramillo A, Fuertes G, et al. Vanillin cell sensor Iet Synthetic Biology. 1: 74-78. DOI: 10.1049/Iet-Stb:20060003  0.756
Show low-probability matches.