Philip Donoghue - Publications

Affiliations: 
University of Bristol, Bristol, England, United Kingdom 

116 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 O'Shea J, Keating JN, Donoghue PCJ. The dermal skeleton of the jawless vertebrate Tremataspis mammillata (Osteostraci, stem-Gnathostomata). Journal of Morphology. PMID 31066961 DOI: 10.1002/jmor.20997  1
2018 Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K. Unicellular Origin of the Animal MicroRNA Machinery. Current Biology : Cb. PMID 30318349 DOI: 10.1016/j.cub.2018.08.018  0.72
2018 Deline B, Greenwood JM, Clark JW, Puttick MN, Peterson KJ, Donoghue PCJ. Evolution of metazoan morphological disparity. Proceedings of the National Academy of Sciences of the United States of America. PMID 30181261 DOI: 10.1073/pnas.1810575115  0.44
2018 Keating JN, Marquart CL, Marone F, Donoghue PCJ. The nature of aspidin and the evolutionary origin of bone. Nature Ecology & Evolution. PMID 30065354 DOI: 10.1038/s41559-018-0624-1  1
2018 Tarver JE, Taylor RS, Puttick MN, Lloyd GT, Pett W, Fromm B, Schirrmeister BE, Pisani D, Peterson KJ, Donoghue PCJ. Well-annotated microRNAomes do not evidence pervasive miRNA loss. Genome Biology and Evolution. PMID 29788279 DOI: 10.1093/gbe/evy096  0.72
2017 Puttick MN, O'Reilly JE, Oakley D, Tanner AR, Fleming JF, Clark J, Holloway L, Lozano-Fernandez J, Parry LA, Tarver JE, Pisani D, Donoghue PCJ. Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al. Proceedings. Biological Sciences. 284. PMID 29021176 DOI: 10.1098/rspb.2017.1636  0.72
2017 Davies TG, Rahman IA, Lautenschlager S, Cunningham JA, Asher RJ, Barrett PM, Bates KT, Bengtson S, Benson RB, Boyer DM, Braga J, Bright JA, Claessens LP, Cox PG, Dong XP, ... ... Donoghue PC, et al. Open data and digital morphology. Proceedings. Biological Sciences. 284. PMID 28404779 DOI: 10.1098/rspb.2017.0194  0.48
2017 Puttick MN, O'Reilly JE, Tanner AR, Fleming JF, Clark J, Holloway L, Lozano-Fernandez J, Parry LA, Tarver JE, Pisani D, Donoghue PC. Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data. Proceedings. Biological Sciences. 284. PMID 28077778 DOI: 10.1098/rspb.2016.2290  0.72
2017 Taylor RS, Tarver JE, Foroozani A, Donoghue PC. MicroRNA annotation of plant genomes - Do it right or not at all. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28054378 DOI: 10.1002/bies.201600113  0.72
2016 Cunningham JA, Liu AG, Bengtson S, Donoghue PC. The origin of animals: Can molecular clocks and the fossil record be reconciled? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 27918074 DOI: 10.1002/bies.201600120  0.44
2016 Cunningham JA, Vargas K, Marone F, Bengtson S, Donoghue PC. A multicellular organism with embedded cell clusters from the Ediacaran Weng'an biota (Doushantuo Formation, South China). Evolution & Development. 18: 308-316. PMID 27870211 DOI: 10.1111/ede.12210  0.6
2016 Gabbott SE, Donoghue PC, Sansom RS, Vinther J, Dolocan A, Purnell MA. Pigmented anatomy in Carboniferous cyclostomes and the evolution of the vertebrate eye. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27488650 DOI: 10.1098/rspb.2016.1151  1
2016 De Baets K, Antonelli A, Donoghue PC. Tectonic blocks and molecular clocks. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27325840 DOI: 10.1098/rstb.2016.0098  1
2016 O'Reilly JE, Puttick MN, Parry L, Tanner AR, Tarver JE, Fleming J, Pisani D, Donoghue PC. Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data. Biology Letters. 12. PMID 27095266 DOI: 10.1098/rsbl.2016.0081  0.72
2016 Keating JN, Donoghue PC. Histology and affinity of anaspids, and the early evolution of the vertebrate dermal skeleton. Proceedings. Biological Sciences / the Royal Society. 283. PMID 26962140 DOI: 10.1098/rspb.2015.2917  1
2016 Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D. The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference. Genome Biology and Evolution. PMID 26733575 DOI: 10.1093/gbe/evv261  0.72
2015 Dos Reis M, Donoghue PC, Yang Z. Bayesian molecular clock dating of species divergences in the genomics era. Nature Reviews. Genetics. PMID 26688196 DOI: 10.1038/nrg.2015.8  1
2015 Puttick MN, Clark J, Donoghue PC. Size is not everything: rates of genome size evolution, not C-value, correlate with speciation in angiosperms. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26631568 DOI: 10.1098/rspb.2015.2289  1
2015 Dos Reis M, Thawornwattana Y, Angelis K, Telford MJ, Donoghue PC, Yang Z. Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales. Current Biology : Cb. PMID 26603774 DOI: 10.1016/j.cub.2015.09.066  1
2015 O'Reilly JE, Dos Reis M, Donoghue PC. Dating Tips for Divergence-Time Estimation. Trends in Genetics : Tig. 31: 637-50. PMID 26439502 DOI: 10.1016/j.tig.2015.08.001  1
2015 Cunningham JA, Vargas K, Pengju L, Belivanova V, Marone F, Martínez-Pérez C, Guizar-Sicairos M, Holler M, Bengtson S, Donoghue PC. Critical appraisal of tubular putative eumetazoans from the Ediacaran Weng'an Doushantuo biota. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26180072 DOI: 10.1098/rspb.2015.1169  1
2015 Rücklin M, Donoghue PC. Romundina and the evolutionary origin of teeth. Biology Letters. 11. PMID 26109615 DOI: 10.1098/rsbl.2015.0326  1
2015 Keating JN, Marquart CL, Donoghue PC. Histology of the heterostracan dermal skeleton: Insight into the origin of the vertebrate mineralised skeleton. Journal of Morphology. 276: NA. PMID 25989042 DOI: 10.1002/jmor.20409  1
2015 Butler AD, Cunningham JA, Budd GE, Donoghue PC. Experimental taphonomy of Artemia reveals the role of endogenous microbes in mediating decay and fossilization. Proceedings. Biological Sciences / the Royal Society. 282: 20150476. PMID 25972468 DOI: 10.1098/rspb.2015.0476  1
2015 Ksepka DT, Parham JF, Allman JF, Benton MJ, Carrano MT, Cranston KA, Donoghue PC, Head JJ, Hermsen EJ, Irmis RB, Joyce WG, Kohli M, Lamm KD, Leehr D, Patané JL, et al. The Fossil Calibration Database-A New Resource for Divergence Dating. Systematic Biology. PMID 25922515 DOI: 10.1093/sysbio/syv025  1
2015 Keating JN, Marquart CL, Donoghue PC. Histology of the heterostracan dermal skeleton: Insight into the origin of the vertebrate mineralised skeleton. Journal of Morphology. 276: 657-80. PMID 25829358 DOI: 10.1002/jmor.20370  1
2015 Sansom RS, Randle E, Donoghue PC. Discriminating signal from noise in the fossil record of early vertebrates reveals cryptic evolutionary history. Proceedings. Biological Sciences / the Royal Society. 282: 20142245. PMID 25520359 DOI: 10.1098/rspb.2014.2245  1
2015 Warnock RC, Parham JF, Joyce WG, Lyson TR, Donoghue PC. Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors. Proceedings. Biological Sciences / the Royal Society. 282: 20141013. PMID 25429012 DOI: 10.1098/rspb.2014.1013  1
2015 Guizar-Sicairos M, Holler M, Diaz A, Da Silva JC, Tsai EHR, Bunk O, Martinez-Perez C, Donoghue PCJ, Wellman CH, Menzel A. Ptychographic nanotomography at the Swiss Light Source Proceedings of Spie - the International Society For Optical Engineering. 9592. DOI: 10.1117/12.2188313  1
2015 Schirrmeister BE, Gugger M, Donoghue PC. Corrigendum to Cyanobacteria and the Great Oxidation Event: Evidence from genes and fossils. [Palaeontology. (2015). doi: 10.1111/pala.12178] Palaeontology. 58: 935-936. DOI: 10.1111/pala.12193  1
2015 Schirrmeister BE, Gugger M, Donoghue PCJ. Cyanobacteria and the Great Oxidation Event: Evidence from genes and fossils Palaeontology. DOI: 10.1111/pala.12178  1
2015 Hetherington AJ, Sherratt E, Ruta M, Wilkinson M, Deline B, Donoghue PCJ. Do cladistic and morphometric data capture common patterns of morphological disparity? Palaeontology. 58: 393-399. DOI: 10.1111/pala.12159  1
2015 De Baets K, Dentzien-Dias P, Upeniece I, Verneau O, Donoghue PCJ. Constraining the Deep Origin of Parasitic Flatworms and Host-Interactions with Fossil Evidence Advances in Parasitology. DOI: 10.1016/bs.apar.2015.06.002  1
2015 Donoghue PCJ, Cunningham JA, Dong XP, Bengtson S. Embryology in deep time Evolutionary Developmental Biology of Invertebrates 1: Introduction, Non-Bilateria, Acoelomorpha, Xenoturbellida, Chaetognatha. 45-63. DOI: 10.1007/978-3-7091-1862-7_3  1
2015 Benton MJ, Donoghue PCJ, Asher RJ, Friedman M, Near TJ, Vinther J. Constraints on the timescale of animal evolutionary history Palaeontologia Electronica. 18.  1
2014 Rücklin M, Donoghue PC, Cunningham JA, Marone F, Stampanoni M. DEVELOPMENTAL PALEOBIOLOGY OF THE VERTEBRATE SKELETON. Journal of Paleontology. 88: 676-683. PMID 26306050 DOI: 10.1666/13-107  0.6
2014 Murdock DJ, Rayfield EJ, Donoghue PC. Functional adaptation underpinned the evolutionary assembly of the earliest vertebrate skeleton. Evolution & Development. 16: 354-61. PMID 25271121 DOI: 10.1111/ede.12096  1
2014 Donoghue PC, Rücklin M. The ins and outs of the evolutionary origin of teeth. Evolution & Development. PMID 25219878 DOI: 10.1111/ede.12099  1
2014 Cunningham JA, Rahman IA, Lautenschlager S, Rayfield EJ, Donoghue PC. A virtual world of paleontology. Trends in Ecology & Evolution. 29: 347-57. PMID 24821516 DOI: 10.1016/j.tree.2014.04.004  1
2014 dos Reis M, Donoghue PC, Yang Z. Neither phylogenomic nor palaeontological data support a Palaeogene origin of placental mammals. Biology Letters. 10: 20131003. PMID 24429684 DOI: 10.1098/rsbl.2013.1003  1
2014 Taylor RS, Tarver JE, Hiscock SJ, Donoghue PC. Evolutionary history of plant microRNAs. Trends in Plant Science. 19: 175-82. PMID 24405820 DOI: 10.1016/j.tplants.2013.11.008  1
2014 Murdock DJ, Bengtson S, Marone F, Greenwood JM, Donoghue PC. Evaluating scenarios for the evolutionary assembly of the brachiopod body plan. Evolution & Development. 16: 13-24. PMID 24393464 DOI: 10.1111/ede.12059  1
2014 Rücklin M, Donoghue PCJ, Cunningham JA, Marone F, Stampanoni M. Developmental paleobiology of the vertebrate skeleton Journal of Paleontology. 88: 676-683. DOI: 10.1666/13-107  1
2014 Donoghue PCJ, Keating JN. Early vertebrate evolution Palaeontology. 57: 879-893. DOI: 10.1111/pala.12125  1
2014 Martínez-Pérez C, Rayfield EJ, Purnell MA, Donoghue PCJ. Finite element, occlusal, microwear and microstructural analyses indicate that conodont microstructure is adapted to dental function Palaeontology. 57: 1059-1066. DOI: 10.1111/pala.12102  1
2014 Martínez-Pérez C, Plasencia P, Jones D, Kolar-Jurkovšek T, Sha J, Botella H, Donoghue PCJ. There is no general model for occlusal kinematics in conodonts Lethaia. 47: 547-555. DOI: 10.1111/let.12080  1
2013 Murdock DJ, Dong XP, Repetski JE, Marone F, Stampanoni M, Donoghue PC. The origin of conodonts and of vertebrate mineralized skeletons. Nature. 502: 546-9. PMID 24132236 DOI: 10.1038/nature12645  1
2013 Murdock DJ, Sansom IJ, Donoghue PC. Cutting the first 'teeth': a new approach to functional analysis of conodont elements. Proceedings. Biological Sciences / the Royal Society. 280: 20131524. PMID 23945689 DOI: 10.1098/rspb.2013.1524  1
2013 Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ. miRNAs: small genes with big potential in metazoan phylogenetics. Molecular Biology and Evolution. 30: 2369-82. PMID 23913097 DOI: 10.1093/molbev/mst133  1
2013 Fang H, Oates ME, Pethica RB, Greenwood JM, Sardar AJ, Rackham OJ, Donoghue PC, Stamatakis A, de Lima Morais DA, Gough J. A daily-updated tree of (sequenced) life as a reference for genome research. Scientific Reports. 3: 2015. PMID 23778980 DOI: 10.1038/srep02015  1
2013 Dong XP, Cunningham JA, Bengtson S, Thomas CW, Liu J, Stampanoni M, Donoghue PC. Embryos, polyps and medusae of the Early Cambrian scyphozoan Olivooides. Proceedings. Biological Sciences / the Royal Society. 280: 20130071. PMID 23446532 DOI: 10.1098/rspb.2013.0071  1
2013 Giles S, Rücklin M, Donoghue PC. Histology of "placoderm" dermal skeletons: Implications for the nature of the ancestral gnathostome. Journal of Morphology. 274: 627-44. PMID 23378262 DOI: 10.1002/jmor.20119  1
2013 Joyce WG, Parham JF, Lyson TR, Warnock RCM, Donoghue PCJ. A divergence dating analysis of turtles using fossil calibrations: An example of best practices Journal of Paleontology. 87: 612-634. DOI: 10.1666/12-149  1
2012 Rücklin M, Donoghue PC, Johanson Z, Trinajstic K, Marone F, Stampanoni M. Development of teeth and jaws in the earliest jawed vertebrates. Nature. 491: 748-51. PMID 23075852 DOI: 10.1038/nature11555  1
2012 Bengtson S, Cunningham JA, Yin C, Donoghue PC. A merciful death for the "earliest bilaterian," Vernanimalcula. Evolution & Development. 14: 421-7. PMID 22947315 DOI: 10.1111/j.1525-142X.2012.00562.x  1
2012 Tarver JE, Donoghue PC, Peterson KJ. Do miRNAs have a deep evolutionary history? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 857-66. PMID 22847169 DOI: 10.1002/bies.201200055  1
2012 Jones D, Evans AR, Rayfield EJ, Siu KK, Donoghue PC. Testing microstructural adaptation in the earliest dental tools. Biology Letters. 8: 952-5. PMID 22764115 DOI: 10.1098/rsbl.2012.0487  1
2012 dos Reis M, Inoue J, Hasegawa M, Asher RJ, Donoghue PC, Yang Z. Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny. Proceedings. Biological Sciences / the Royal Society. 279: 3491-500. PMID 22628470 DOI: 10.1098/rspb.2012.0683  1
2012 Cunningham JA, Rücklin M, Blom H, Botella H, Donoghue PC. Testing models of dental development in the earliest bony vertebrates, Andreolepis and Lophosteus. Biology Letters. 8: 833-7. PMID 22628098 DOI: 10.1098/rsbl.2012.0357  1
2012 Shimeld SM, Donoghue PC. Evolutionary crossroads in developmental biology: cyclostomes (lamprey and hagfish). Development (Cambridge, England). 139: 2091-9. PMID 22619386 DOI: 10.1242/dev.074716  1
2012 Jones D, Evans AR, Siu KK, Rayfield EJ, Donoghue PC. The sharpest tools in the box? Quantitative analysis of conodont element functional morphology. Proceedings. Biological Sciences / the Royal Society. 279: 2849-54. PMID 22418253 DOI: 10.1098/rspb.2012.0147  1
2012 Cunningham JA, Thomas CW, Bengtson S, Kearns SL, Xiao S, Marone F, Stampanoni M, Donoghue PC. Distinguishing geology from biology in the Ediacaran Doushantuo biota relaxes constraints on the timing of the origin of bilaterians. Proceedings. Biological Sciences / the Royal Society. 279: 2369-76. PMID 22319125 DOI: 10.1098/rspb.2011.2280  1
2012 Cunningham JA, Thomas CW, Bengtson S, Marone F, Stampanoni M, Turner FR, Bailey JV, Raff RA, Raff EC, Donoghue PC. Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils. Proceedings. Biological Sciences / the Royal Society. 279: 1857-64. PMID 22158954 DOI: 10.1098/rspb.2011.2064  1
2012 Parham JF, Donoghue PC, Bell CJ, Calway TD, Head JJ, Holroyd PA, Inoue JG, Irmis RB, Joyce WG, Ksepka DT, Patané JS, Smith ND, Tarver JE, van Tuinen M, Yang Z, et al. Best practices for justifying fossil calibrations. Systematic Biology. 61: 346-59. PMID 22105867 DOI: 10.1093/sysbio/syr107  1
2012 Warnock RC, Yang Z, Donoghue PC. Exploring uncertainty in the calibration of the molecular clock. Biology Letters. 8: 156-9. PMID 21865245 DOI: 10.1098/rsbl.2011.0710  1
2012 Huldtgren T, Cunningham JA, Yin C, Stampanoni M, Marone F, Donoghue PCJ, Bengtson S. Response to comment on "fossilized nuclei and germination structures identify ediacaran 'animal embryos'as encysting protists" Science. 335: 1169-d. DOI: 10.1126/science.1219076  1
2012 Duan B, Dong XP, Donoghue PCJ. New palaeoscolecid worms from the Furongian (upper Cambrian) of Hunan, South China: Is Markuelia an embryonic palaeoscolecid? Palaeontology. 55: 613-622. DOI: 10.1111/j.1475-4983.2012.01148.x  1
2012 Murdock DJE, Donoghue PCJ, Bengtson S, Marone F. Ontogeny and microstructure of the enigmatic Cambrian tommotiid Sunnaginia Missarzhevsky, 1969 Palaeontology. 55: 661-676. DOI: 10.1111/j.1475-4983.2012.01131.x  1
2011 Rücklin M, Giles S, Janvier P, Donoghue PC. Teeth before jaws? Comparative analysis of the structure and development of the external and internal scales in the extinct jawless vertebrate Loganellia scotica. Evolution & Development. 13: 523-32. PMID 23016936 DOI: 10.1111/j.1525-142X.2011.00508.x  1
2011 Huldtgren T, Cunningham JA, Yin C, Stampanoni M, Marone F, Donoghue PC, Bengtson S. Fossilized nuclei and germination structures identify Ediacaran "animal embryos" as encysting protists. Science (New York, N.Y.). 334: 1696-9. PMID 22194575 DOI: 10.1126/science.1209537  1
2011 Gai Z, Donoghue PC, Zhu M, Janvier P, Stampanoni M. Fossil jawless fish from China foreshadows early jawed vertebrate anatomy. Nature. 476: 324-7. PMID 21850106 DOI: 10.1038/nature10276  1
2011 Clarke JT, Warnock RC, Donoghue PC. Establishing a time-scale for plant evolution. The New Phytologist. 192: 266-301. PMID 21729086 DOI: 10.1111/j.1469-8137.2011.03794.x  1
2011 Murdock DJ, Donoghue PC. Evolutionary origins of animal skeletal biomineralization. Cells, Tissues, Organs. 194: 98-102. PMID 21625061 DOI: 10.1159/000324245  1
2011 Tarver JE, Donoghue PC. The trouble with topology: phylogenies without fossils provide a revisionist perspective of evolutionary history in topological analyses of diversity. Systematic Biology. 60: 700-12. PMID 21436106 DOI: 10.1093/sysbio/syr018  1
2011 Tarver JE, Donoghue PC, Benton MJ. Is evolutionary history repeatedly rewritten in light of new fossil discoveries? Proceedings. Biological Sciences / the Royal Society. 278: 599-604. PMID 20810435 DOI: 10.1098/rspb.2010.0663  1
2010 Heimberg AM, Cowper-Sal-lari R, Sémon M, Donoghue PC, Peterson KJ. microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate. Proceedings of the National Academy of Sciences of the United States of America. 107: 19379-83. PMID 20959416 DOI: 10.1073/pnas.1010350107  1
2010 Donoghue PC, Antcliffe JB. Early life: Origins of multicellularity. Nature. 466: 41-2. PMID 20596008 DOI: 10.1038/466041a  1
2010 Inoue J, Donoghue PC, Yang Z. The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times. Systematic Biology. 59: 74-89. PMID 20525621 DOI: 10.1093/sysbio/syp078  1
2010 Harvey TH, Dong X, Donoghue PC. Are palaeoscolecids ancestral ecdysozoans? Evolution & Development. 12: 177-200. PMID 20433458 DOI: 10.1111/j.1525-142X.2010.00403.x  1
2010 Dong XP, Bengtson S, Gostling NJ, Cunningham JA, Harvey THP, Kouchinsky A, Val'Kov AK, Repetski JE, Stampanoni M, Marone F, Donoghue PCJ. The anatomy, taphonomy, taxonomy and systematic affinity of Markuelia: Early Cambrian to Early Ordovician scalidophorans Palaeontology. 53: 1291-1314. DOI: 10.1111/j.1475-4983.2010.01006.x  1
2010 Cuthill JFH, Braddy SJ, Donoghue PCJ. A formula for maximum possible steps in multistate characters: Isolating matrix parameter effects on measures of evolutionary convergence Cladistics. 26: 98-102. DOI: 10.1111/j.1096-0031.2009.00270.x  1
2009 Downs JP, Donoghue PC. Skeletal histology of Bothriolepis canadensis (Placodermi, Antiarchi) and evolution of the skeleton at the origin of jawed vertebrates. Journal of Morphology. 270: 1364-80. PMID 19533688 DOI: 10.1002/jmor.10765  1
2009 Sire JY, Donoghue PC, Vickaryous MK. Origin and evolution of the integumentary skeleton in non-tetrapod vertebrates. Journal of Anatomy. 214: 409-40. PMID 19422423 DOI: 10.1111/j.1469-7580.2009.01046.x  1
2009 Scott AC, Galtier J, Gostling NJ, Smith SY, Collinson ME, Stampanoni M, Marone F, Donoghue PC, Bengtson S. Scanning electron microscopy and synchrotron radiation x-ray tomographic microscopy of 330 million year old charcoalified seed fern fertile organs. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 15: 166-73. PMID 19284898 DOI: 10.1017/S1431927609090126  1
2009 Donoghue PC, Purnell MA. Distinguishing heat from light in debate over controversial fossils. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 178-89. PMID 19204990 DOI: 10.1002/bies.200800128  1
2009 Gostling NJ, Dong X, Donoghue PCJ. Otogeny and taphonomy: An experimental taphonomy study of the development of the brine shrimp Artemia salina Palaeontology. 52: 169-186. DOI: 10.1111/j.1475-4983.2008.00834.x  1
2009 Botella H, Donoghue PCJ, Martínez-Pérez C. Enameloid microstructure in the oldest known chondrichthyan teeth Acta Zoologica. 90: 103-108. DOI: 10.1111/j.1463-6395.2008.00337.x  1
2008 Raff EC, Schollaert KL, Nelson DE, Donoghue PC, Thomas CW, Turner FR, Stein BD, Dong X, Bengtson S, Huldtgren T, Stampanoni M, Chongyu Y, Raff RA. Embryo fossilization is a biological process mediated by microbial biofilms. Proceedings of the National Academy of Sciences of the United States of America. 105: 19360-5. PMID 19047625 DOI: 10.1073/pnas.0810106105  1
2008 Donoghue PC, Graham A, Kelsh RN. The origin and evolution of the neural crest. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 530-41. PMID 18478530 DOI: 10.1002/bies.20767  1
2008 Gostling NJ, Thomas CW, Greenwood JM, Dong X, Bengtson S, Raff EC, Raff RA, Degnan BM, Stampanoni M, Donoghue PC. Deciphering the fossil record of early bilaterian embryonic development in light of experimental taphonomy. Evolution & Development. 10: 339-49. PMID 18460095 DOI: 10.1111/j.1525-142X.2008.00242.x  1
2008 Heimberg AM, Sempere LF, Moy VN, Donoghue PC, Peterson KJ. MicroRNAs and the advent of vertebrate morphological complexity. Proceedings of the National Academy of Sciences of the United States of America. 105: 2946-50. PMID 18287013 DOI: 10.1073/pnas.0712259105  1
2008 Sansom RS, Rodygin SA, Donoghue PCJ. The anatomy, affinity and phylogenetic significance of Ilemoraspis kirkinskayae (osteostraci) from the Devonian of Siberia Journal of Vertebrate Paleontology. 28: 613-625. DOI: 10.1671/0272-4634(2008)28[613:TAAAPS]2.0.CO;2  1
2008 Donoghue PCJ, Purnell MA, Aldridge RJ, Zhang S. The interrelationships of 'complex' conodonts (Vertebrata) Journal of Systematic Palaeontology. 6: 119-153. DOI: 10.1017/S1477201907002234  1
2007 Friis EM, Crane PR, Pedersen KR, Bengtson S, Donoghue PC, Grimm GW, Stampanoni M. Phase-contrast X-ray microtomography links Cretaceous seeds with Gnetales and Bennettitales. Nature. 450: 549-52. PMID 18033296 DOI: 10.1038/nature06278  1
2007 Donoghue PC, Benton MJ. Rocks and clocks: calibrating the Tree of Life using fossils and molecules. Trends in Ecology & Evolution. 22: 424-31. PMID 17573149 DOI: 10.1016/j.tree.2007.05.005  1
2007 Gostling NJ, Donoghue PC, Bengtson S. The earliest fossil embryos begin to mature. Evolution & Development. 9: 206-7. PMID 17501743 DOI: 10.1111/j.1525-142X.2007.00152.x  1
2007 Donoghue PC. Palaeontology: embryonic identity crisis. Nature. 445: 155-6. PMID 17183264 DOI: 10.1038/nature05520  1
2007 Gillis JA, Donoghue PC. The homology and phylogeny of chondrichthyan tooth enameloid. Journal of Morphology. 268: 33-49. PMID 17146771 DOI: 10.1002/jmor.10501  1
2007 Benton MJ, Donoghue PC. Paleontological evidence to date the tree of life. Molecular Biology and Evolution. 24: 26-53. PMID 17047029 DOI: 10.1093/molbev/msl150  1
2007 Peterson KJ, Summons RE, Donoghue PCJ. Molecular palaeobiology Palaeontology. 50: 775-809. DOI: 10.1111/j.1475-4983.2007.00692.x  1
2007 Bard J, Bell MA, Brakefield PM, Budd G, Coates M, Duboule D, Hall BK, Hallgrimsson B, Jernvall J, Lieberman D, Raff R, Stern D, Wagner G, Weiss K. Discussion Novartis Foundation Symposium. 284: 101-109.  1
2007 Bard J, Bell MA, Brakefield PM, Budd G, Coates M, Duboule D, Hall BK, Hallgrimsson B, Jernvall J, Lieberman D, Raff R, Stern D, Wagner G, Weiss K. Discussion Novartis Foundation Symposium. 284: 101-109.  1
2006 Hagadorn JW, Xiao S, Donoghue PC, Bengtson S, Gostling NJ, Pawlowska M, Raff EC, Raff RA, Turner FR, Chongyu Y, Zhou C, Yuan X, McFeely MB, Stampanoni M, Nealson KH. Cellular and subcellular structure of neoproterozoic animal embryos. Science (New York, N.Y.). 314: 291-4. PMID 17038620 DOI: 10.1126/science.1133129  1
2006 Donoghue PC, Bengtson S, Dong XP, Gostling NJ, Huldtgren T, Cunningham JA, Yin C, Yue Z, Peng F, Stampanoni M. Synchrotron X-ray tomographic microscopy of fossil embryos. Nature. 442: 680-3. PMID 16900198 DOI: 10.1038/nature04890  1
2006 Raff EC, Villinski JT, Turner FR, Donoghue PC, Raff RA. Experimental taphonomy shows the feasibility of fossil embryos. Proceedings of the National Academy of Sciences of the United States of America. 103: 5846-51. PMID 16571655 DOI: 10.1073/pnas.0601536103  1
2006 Donoghue PC, Sansom IJ, Downs JP. Early evolution of vertebrate skeletal tissues and cellular interactions, and the canalization of skeletal development. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 306: 278-94. PMID 16555304 DOI: 10.1002/jez.b.21090  1
2006 Donoghue PC, Kouchinsky A, Waloszek D, Bengtson S, Dong XP, Val'kov AK, Cunningham JA, Repetski JE. Fossilized embryos are widespread but the record is temporally and taxonomically biased. Evolution & Development. 8: 232-8. PMID 16509901 DOI: 10.1111/j.1525-142X.2006.00093.x  1
2006 Maas A, Braun A, Dong XP, Donoghue PCJ, Müller KJ, Olempska E, Repetski JE, Siveter DJ, Stein M, Waloszek D. The 'Orsten'-More than a Cambrian Konservat-Lagerstätte yielding exceptional preservation Palaeoworld. 15: 266-282. DOI: 10.1016/j.palwor.2006.10.005  1
2005 Sansom IJ, Donoghue PC, Albanesi G. Histology and affinity of the earliest armoured vertebrate. Biology Letters. 1: 446-9. PMID 17148229 DOI: 10.1098/rsbl.2005.0349  1
2005 Donoghue PC, Purnell MA. Genome duplication, extinction and vertebrate evolution. Trends in Ecology & Evolution. 20: 312-9. PMID 16701387 DOI: 10.1016/j.tree.2005.04.008  1
2005 Dong XP, Donoghue PC, Cunningham JA, Liu JB, Cheng H. The anatomy, affinity, and phylogenetic significance of Markuelia. Evolution & Development. 7: 468-82. PMID 16174039 DOI: 10.1111/j.1525-142X.2005.05050.x  1
2005 Wang NZ, Donoghue PCJ, Smith MM, Sansom IJ. Histology of the galeaspid dermoskeleton and endoskeleton, and the origin and early evolution of the vertebrate cranial endoskeleton Journal of Vertebrate Paleontology. 25: 745-756. DOI: 10.1671/0272-4634(2005)025[0745:HOTGDA]2.0.CO;2  1
2005 Donoghue PCJ. Saving the stem group - A contradiction in terms? Paleobiology. 31: 553-558. DOI: 10.1666/0094-8373(2005)031[0553:STSGCI]2.0.CO;2  1
2005 Dong X, Donoghue PCJ, Liu Z, Liu J, Peng F. The fossils of Orsten-type preservation from Middle and Upper Cambrian in Hunan, China - Three-dimensionally preserved soft-bodied fossils (Arthropods) Chinese Science Bulletin. 50: 1352-1357. DOI: 10.1360/982005-795  1
2002 Donoghue PC, Sansom IJ. Origin and early evolution of vertebrate skeletonization. Microscopy Research and Technique. 59: 352-72. PMID 12430166 DOI: 10.1002/jemt.10217  0.6
2000 Donoghue PC, Forey PL, Aldridge RJ. Conodont affinity and chordate phylogeny. Biological Reviews of the Cambridge Philosophical Society. 75: 191-251. PMID 10881388  1
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