Philip Donoghue - Publications

University of Bristol, Bristol, England, United Kingdom 

112 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, ... ... Donoghue PCJ, et al. Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature Ecology & Evolution. PMID 38216617 DOI: 10.1038/s41559-023-02299-z  0.769
2023 Mahendrarajah TA, Moody ERR, Schrempf D, Szánthó LL, Dombrowski N, Davín AA, Pisani D, Donoghue PCJ, Szöllősi GJ, Williams TA, Spang A. ATP synthase evolution on a cross-braced dated tree of life. Nature Communications. 14: 7456. PMID 37978174 DOI: 10.1038/s41467-023-42924-w  0.533
2023 Donoghue PCJ, Kay C, Spang A, Szöllősi G, Nenarokova A, Moody ERR, Pisani D, Williams TA. Defining eukaryotes to dissect eukaryogenesis. Current Biology : Cb. 33: R919-R929. PMID 37699353 DOI: 10.1016/j.cub.2023.07.048  0.536
2023 Smith TJ, Sansom RS, Pisani D, Donoghue PCJ. Fossilization can mislead analyses of phenotypic disparity. Proceedings. Biological Sciences. 290: 20230522. PMID 37554036 DOI: 10.1098/rspb.2023.0522  0.791
2023 Carlisle E, Janis CM, Pisani D, Donoghue PCJ, Silvestro D. A timescale for placental mammal diversification based on Bayesian modeling of the fossil record. Current Biology : Cb. PMID 37379845 DOI: 10.1016/j.cub.2023.06.016  0.533
2023 Wu R, Pisani D, Donoghue PCJ. The unbearable uncertainty of panarthropod relationships. Biology Letters. 19: 20220497. PMID 36628953 DOI: 10.1098/rsbl.2022.0497  0.578
2022 Gai Z, Li Q, Ferrón HG, Keating JN, Wang J, Donoghue PCJ, Zhu M. Galeaspid anatomy and the origin of vertebrate paired appendages. Nature. 609: 959-963. PMID 36171376 DOI: 10.1038/s41586-022-04897-6  0.608
2022 López-Antoñanzas R, Mitchell J, Simões TR, Condamine FL, Aguilée R, Peláez-Campomanes P, Renaud S, Rolland J, Donoghue PCJ. Integrative Phylogenetics: Tools for Palaeontologists to Explore the Tree of Life. Biology. 11. PMID 36009812 DOI: 10.3390/biology11081185  0.317
2022 Ferrón HG, Donoghue PCJ. Evolutionary analysis of swimming speed in early vertebrates challenges the 'New Head Hypothesis'. Communications Biology. 5: 863. PMID 36002583 DOI: 10.1038/s42003-022-03730-0  0.317
2022 Mills DB, Boyle RA, Daines SJ, Sperling EA, Pisani D, Donoghue PCJ, Lenton TM. Eukaryogenesis and oxygen in Earth history. Nature Ecology & Evolution. PMID 35449457 DOI: 10.1038/s41559-022-01733-y  0.455
2022 Cai C, Tihelka E, Giacomelli M, Lawrence JF, Ślipiński A, Kundrata R, Yamamoto S, Thayer MK, Newton AF, Leschen RAB, Gimmel ML, Lü L, Engel MS, Bouchard P, Huang D, ... ... Donoghue PCJ, et al. Integrated phylogenomics and fossil data illuminate the evolution of beetles. Royal Society Open Science. 9: 211771. PMID 35345430 DOI: 10.1098/rsos.211771  0.58
2021 Álvarez-Carretero S, Tamuri AU, Battini M, Nascimento FF, Carlisle E, Asher RJ, Yang Z, Donoghue PCJ, Dos Reis M. A Species-Level Timeline of Mammal Evolution Integrating Phylogenomic Data. Nature. PMID 34937052 DOI: 10.1038/s41586-021-04341-1  0.573
2021 Tihelka E, Cai C, Giacomelli M, Lozano-Fernandez J, Rota-Stabelli O, Huang D, Engel MS, Donoghue PCJ, Pisani D. The evolution of insect biodiversity. Current Biology : Cb. 31: R1299-R1311. PMID 34637741 DOI: 10.1016/j.cub.2021.08.057  0.597
2021 Dunn FS, Liu AG, Grazhdankin DV, Vixseboxse P, Flannery-Sutherland J, Green E, Harris S, Wilby PR, Donoghue PCJ. The developmental biology of and the eumetazoan affinity of the Ediacaran rangeomorphs. Science Advances. 7. PMID 34301594 DOI: 10.1126/sciadv.abe0291  0.34
2021 Beavan AJS, Pisani D, Donoghue PCJ. Diversification dynamics of total-, stem-, and crown-groups are compatible with molecular clock estimates of divergence times. Science Advances. 7. PMID 34117058 DOI: 10.1126/sciadv.abf2257  0.527
2021 Kawasaki K, Keating JN, Nakatomi M, Welten M, Mikami M, Sasagawa I, Puttick MN, Donoghue PCJ, Ishiyama M. Coevolution of enamel, ganoin, enameloid, and their matrix SCPP genes in osteichthyans. Iscience. 24: 102023. PMID 33506188 DOI: 10.1016/j.isci.2020.102023  0.577
2021 Ferrón HG, Martínez-Pérez C, Rahman IA, Selles de Lucas V, Botella H, Donoghue PCJ. Functional assessment of morphological homoplasy in stem-gnathostomes. Proceedings. Biological Sciences. 288: 20202719. PMID 33467997 DOI: 10.1098/rspb.2020.2719  0.306
2020 Tihelka E, Cai C, Giacomelli M, Pisani D, Donoghue PCJ. Integrated phylogenomic and fossil evidence of stick and leaf insects (Phasmatodea) reveal a Permian-Triassic co-origination with insectivores. Royal Society Open Science. 7: 201689. PMID 33391817 DOI: 10.1098/rsos.201689  0.563
2020 Tihelka E, Cai C, Pisani D, Donoghue PCJ. Mitochondrial genomes illuminate the evolutionary history of the Western honey bee (Apis mellifera). Scientific Reports. 10: 14515. PMID 32884034 DOI: 10.1038/S41598-020-71393-0  0.539
2020 Guillerme T, Cooper N, Brusatte SL, Davis KE, Jackson AL, Gerber S, Goswami A, Healy K, Hopkins MJ, Jones MEH, Lloyd GT, O'Reilly JE, Pate A, Puttick MN, Rayfield EJ, ... ... Donoghue PCJ, et al. Disparities in the analysis of morphological disparity. Biology Letters. 16: 20200199. PMID 32603646 DOI: 10.1098/Rsbl.2020.0199  0.568
2020 Beavan AJS, Donoghue PCJ, Beaumont MA, Pisani D. Performance of a priori and a posteriori calibration strategies in divergence time estimation. Genome Biology and Evolution. PMID 32442306 DOI: 10.1093/Gbe/Evaa105  0.528
2020 Cai C, Tihelka E, Pisani D, Donoghue PCJ. Data curation and modeling of compositional heterogeneity in insect phylogenomics: A case study of the phylogeny of Dytiscoidea (Coleoptera: Adephaga). Molecular Phylogenetics and Evolution. 147: 106782. PMID 32147574 DOI: 10.1016/J.Ympev.2020.106782  0.558
2019 Donoghue P. Evolution: The Flowering of Land Plant Evolution. Current Biology : Cb. 29: R753-R756. PMID 31386854 DOI: 10.1016/J.Cub.2019.06.021  0.322
2019 O'Shea J, Keating JN, Donoghue PCJ. The dermal skeleton of the jawless vertebrate Tremataspis mammillata (Osteostraci, stem-Gnathostomata). Journal of Morphology. PMID 31066961 DOI: 10.1002/Jmor.20997  0.636
2019 Püschel HP, O'Reilly JE, Pisani D, Donoghue PCJ. The impact of fossil stratigraphic ranges on tip‐calibration, and the accuracy and precision of divergence time estimates Palaeontology. 63: 67-83. DOI: 10.1111/Pala.12443  0.477
2019 Huang J, Martínez‐Pérez C, Hu S, Zhang Q, Zhang K, Zhou C, Wen W, Xie T, Benton MJ, Chen Z, Luo M, Donoghue PCJ. Apparatus architecture of the conodont Nicoraella kockeli (Gondolelloidea, Prioniodinina) constrains functional interpretations Palaeontology. 62: 823-835. DOI: 10.1111/Pala.12429  0.375
2019 Gai Z, Zhu M, Donoghue PC. The circulatory system of Galeaspida (Vertebrata; stem-Gnathostomata) revealed by synchrotron X-ray tomographic microscopy Palaeoworld. 28: 441-460. DOI: 10.1016/J.Palwor.2019.04.005  0.524
2019 Sun W, Yin Z, Donoghue P, Liu P, Shang X, Zhu M. Tubular microfossils from the Ediacaran Weng’an Biota (Doushantuo Formation, South China) are not early animals Palaeoworld. 28: 469-477. DOI: 10.1016/J.Palwor.2019.04.004  0.385
2019 Huang J, Martínez-Pérez C, Hu S, Donoghue PC, Zhang Q, Zhou C, Wen W, Benton MJ, Luo M, Yao H, Zhang K. Middle Triassic conodont apparatus architecture revealed by synchrotron X-ray microtomography Palaeoworld. 28: 429-440. DOI: 10.1016/J.Palwor.2018.08.003  0.412
2019 Huang J, Hu S, Zhang Q, Donoghue PC, Benton MJ, Zhou C, Martínez-Pérez C, Wen W, Xie T, Chen Z, Luo M, Yao H, Zhang K. Gondolelloid multielement conodont apparatus (Nicoraella) from the Middle Triassic of Yunnan Province, southwestern China Palaeogeography, Palaeoclimatology, Palaeoecology. 522: 98-110. DOI: 10.1016/J.Palaeo.2018.07.015  0.43
2018 Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K. Unicellular Origin of the Animal MicroRNA Machinery. Current Biology : Cb. PMID 30318349 DOI: 10.1016/J.Cub.2018.08.018  0.694
2018 Morris JL, Puttick MN, Clark JW, Edwards D, Kenrick P, Pressel S, Wellman CH, Yang Z, Schneider H, Donoghue PCJ. Reply to Hedges et al.: Accurate timetrees do indeed require accurate calibrations. Proceedings of the National Academy of Sciences of the United States of America. PMID 30266794 DOI: 10.1073/Pnas.1812816115  0.524
2018 Deline B, Greenwood JM, Clark JW, Puttick MN, Peterson KJ, Donoghue PCJ. Evolution of metazoan morphological disparity. Proceedings of the National Academy of Sciences of the United States of America. PMID 30181261 DOI: 10.1073/Pnas.1810575115  0.568
2018 Betts HC, Puttick MN, Clark JW, Williams TA, Donoghue PCJ, Pisani D. Integrated genomic and fossil evidence illuminates life's early evolution and eukaryote origin. Nature Ecology & Evolution. PMID 30127539 DOI: 10.1038/S41559-018-0644-X  0.508
2018 Keating JN, Marquart CL, Marone F, Donoghue PCJ. The nature of aspidin and the evolutionary origin of bone. Nature Ecology & Evolution. PMID 30065354 DOI: 10.1038/S41559-018-0624-1  0.562
2018 Tarver JE, Taylor RS, Puttick MN, Lloyd GT, Pett W, Fromm B, Schirrmeister BE, Pisani D, Peterson KJ, Donoghue PCJ. Well-annotated microRNAomes do not evidence pervasive miRNA loss. Genome Biology and Evolution. PMID 29788279 DOI: 10.1093/Gbe/Evy096  0.778
2018 Morris JL, Puttick MN, Clark JW, Edwards D, Kenrick P, Pressel S, Wellman CH, Yang Z, Schneider H, Donoghue PCJ. The timescale of early land plant evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463716 DOI: 10.1073/Pnas.1719588115  0.536
2018 Puttick MN, Morris JL, Williams TA, Cox CJ, Edwards D, Kenrick P, Pressel S, Wellman CH, Schneider H, Pisani D, Donoghue PCJ. The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte. Current Biology : Cb. PMID 29456145 DOI: 10.1016/J.Cub.2018.01.063  0.524
2018 Barba-Montoya J, Dos Reis M, Schneider H, Donoghue PCJ, Yang Z. Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution. The New Phytologist. PMID 29399804 DOI: 10.1111/Nph.15011  0.604
2018 O'Reilly JE, Puttick MN, Pisani D, Donoghue PCJ. Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data. Palaeontology. 61: 105-118. PMID 29398726 DOI: 10.1111/Pala.12330  0.564
2018 O'Reilly JE, Puttick MN, Pisani D, Donoghue PCJ. Empirical realism of simulated data is more important than the model used to generate it: a reply to Goloboff et al . Palaeontology. 61: 631-635. DOI: 10.1111/Pala.12361  0.444
2017 Dunn FS, Liu AG, Donoghue PCJ. Ediacaran developmental biology. Biological Reviews of the Cambridge Philosophical Society. PMID 29105292 DOI: 10.1111/brv.12379  0.311
2017 Puttick MN, O'Reilly JE, Oakley D, Tanner AR, Fleming JF, Clark J, Holloway L, Lozano-Fernandez J, Parry LA, Tarver JE, Pisani D, Donoghue PCJ. Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al. Proceedings. Biological Sciences. 284. PMID 29021176 DOI: 10.1098/Rspb.2017.1636  0.766
2017 Warnock RCM, Yang Z, Donoghue PCJ. Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution. Proceedings. Biological Sciences. 284. PMID 28637852 DOI: 10.1098/Rspb.2017.0227  0.791
2017 Lozano-Fernandez J, Dos Reis M, Donoghue PCJ, Pisani D. RelTime rates collapses to a strict clock when estimating the timeline of animal diversification. Genome Biology and Evolution. PMID 28449025 DOI: 10.1093/Gbe/Evx079  0.546
2017 Davies TG, Rahman IA, Lautenschlager S, Cunningham JA, Asher RJ, Barrett PM, Bates KT, Bengtson S, Benson RB, Boyer DM, Braga J, Bright JA, Claessens LP, Cox PG, Dong XP, ... ... Donoghue PC, et al. Open data and digital morphology. Proceedings. Biological Sciences. 284. PMID 28404779 DOI: 10.1098/Rspb.2017.0194  0.54
2017 Donoghue P. Evolution: Divining the Nature of the Ancestral Vertebrate. Current Biology : Cb. 27: R277-R279. PMID 28376337 DOI: 10.1016/J.Cub.2017.02.029  0.377
2017 Puttick MN, O'Reilly JE, Tanner AR, Fleming JF, Clark J, Holloway L, Lozano-Fernandez J, Parry LA, Tarver JE, Pisani D, Donoghue PC. Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data. Proceedings. Biological Sciences. 284. PMID 28077778 DOI: 10.1098/Rspb.2016.2290  0.768
2017 Taylor RS, Tarver JE, Foroozani A, Donoghue PC. MicroRNA annotation of plant genomes - Do it right or not at all. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28054378 DOI: 10.1002/Bies.201600113  0.676
2016 Gabbott SE, Donoghue PC, Sansom RS, Vinther J, Dolocan A, Purnell MA. Pigmented anatomy in Carboniferous cyclostomes and the evolution of the vertebrate eye. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27488650 DOI: 10.1098/Rspb.2016.1151  0.763
2016 De Baets K, Antonelli A, Donoghue PC. Tectonic blocks and molecular clocks. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27325840 DOI: 10.1098/Rstb.2016.0098  0.76
2016 Donoghue PC, Yang Z. The evolution of methods for establishing evolutionary timescales. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27325838 DOI: 10.1098/Rstb.2016.0020  0.585
2016 Yang Z, Donoghue PC. Dating species divergences using rocks and clocks. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27325825 DOI: 10.1098/Rstb.2015.0126  0.575
2016 O'Reilly JE, Puttick MN, Parry L, Tanner AR, Tarver JE, Fleming J, Pisani D, Donoghue PC. Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data. Biology Letters. 12. PMID 27095266 DOI: 10.1098/Rsbl.2016.0081  0.759
2016 Keating JN, Donoghue PC. Histology and affinity of anaspids, and the early evolution of the vertebrate dermal skeleton. Proceedings. Biological Sciences / the Royal Society. 283. PMID 26962140 DOI: 10.1098/Rspb.2015.2917  0.651
2016 Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D. The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference. Genome Biology and Evolution. PMID 26733575 DOI: 10.1093/Gbe/Evv261  0.769
2015 Schirrmeister BE, Gugger M, Donoghue PC. Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils. Palaeontology. 58: 769-785. PMID 26924853 DOI: 10.1111/pala.12178  0.307
2015 Dos Reis M, Donoghue PC, Yang Z. Bayesian molecular clock dating of species divergences in the genomics era. Nature Reviews. Genetics. PMID 26688196 DOI: 10.1038/Nrg.2015.8  0.558
2015 Dos Reis M, Thawornwattana Y, Angelis K, Telford MJ, Donoghue PC, Yang Z. Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales. Current Biology : Cb. PMID 26603774 DOI: 10.1016/J.Cub.2015.09.066  0.583
2015 De Baets K, Dentzien-Dias P, Upeniece I, Verneau O, Donoghue PC. Constraining the Deep Origin of Parasitic Flatworms and Host-Interactions with Fossil Evidence. Advances in Parasitology. 90: 93-135. PMID 26597066 DOI: 10.1016/bs.apar.2015.06.002  0.724
2015 Ksepka DT, Parham JF, Allman JF, Benton MJ, Carrano MT, Cranston KA, Donoghue PC, Head JJ, Hermsen EJ, Irmis RB, Joyce WG, Kohli M, Lamm KD, Leehr D, Patané JL, et al. The Fossil Calibration Database-A New Resource for Divergence Dating. Systematic Biology. PMID 25922515 DOI: 10.1093/Sysbio/Syv025  0.766
2015 Keating JN, Marquart CL, Donoghue PC. Histology of the heterostracan dermal skeleton: Insight into the origin of the vertebrate mineralised skeleton. Journal of Morphology. 276: 657-80. PMID 25829358 DOI: 10.1002/Jmor.20370  0.582
2015 Sansom RS, Randle E, Donoghue PC. Discriminating signal from noise in the fossil record of early vertebrates reveals cryptic evolutionary history. Proceedings. Biological Sciences / the Royal Society. 282: 20142245. PMID 25520359 DOI: 10.1098/rspb.2014.2245  0.784
2015 Warnock RC, Parham JF, Joyce WG, Lyson TR, Donoghue PC. Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors. Proceedings. Biological Sciences / the Royal Society. 282: 20141013. PMID 25429012 DOI: 10.1098/Rspb.2014.1013  0.734
2015 Benton MJ, Donoghue PCJ, Asher RJ, Friedman M, Near TJ, Vinther J. Constraints on the timescale of animal evolutionary history Palaeontologia Electronica. 18. DOI: 10.26879/424  0.46
2015 De Baets K, Dentzien-Dias P, Upeniece I, Verneau O, Donoghue PCJ. Constraining the Deep Origin of Parasitic Flatworms and Host-Interactions with Fossil Evidence Advances in Parasitology. DOI: 10.1016/bs.apar.2015.06.002  0.699
2014 Murdock DJ, Rayfield EJ, Donoghue PC. Functional adaptation underpinned the evolutionary assembly of the earliest vertebrate skeleton. Evolution & Development. 16: 354-61. PMID 25271121 DOI: 10.1111/ede.12096  0.778
2014 dos Reis M, Donoghue PC, Yang Z. Neither phylogenomic nor palaeontological data support a Palaeogene origin of placental mammals. Biology Letters. 10: 20131003. PMID 24429684 DOI: 10.1098/Rsbl.2013.1003  0.507
2014 Taylor RS, Tarver JE, Hiscock SJ, Donoghue PC. Evolutionary history of plant microRNAs. Trends in Plant Science. 19: 175-82. PMID 24405820 DOI: 10.1016/J.Tplants.2013.11.008  0.67
2014 Murdock DJ, Bengtson S, Marone F, Greenwood JM, Donoghue PC. Evaluating scenarios for the evolutionary assembly of the brachiopod body plan. Evolution & Development. 16: 13-24. PMID 24393464 DOI: 10.1111/ede.12059  0.797
2014 Donoghue PCJ, Keating JN. Early vertebrate evolution Palaeontology. 57: 879-893. DOI: 10.1111/Pala.12125  0.679
2014 Martínez-Pérez C, Rayfield EJ, Purnell MA, Donoghue PCJ. Finite element, occlusal, microwear and microstructural analyses indicate that conodont microstructure is adapted to dental function Palaeontology. 57: 1059-1066. DOI: 10.1111/Pala.12102  0.749
2014 Martínez-Pérez C, Plasencia P, Jones D, Kolar-Jurkovšek T, Sha J, Botella H, Donoghue PCJ. There is no general model for occlusal kinematics in conodonts Lethaia. 47: 547-555. DOI: 10.1111/Let.12080  0.565
2013 Murdock DJ, Dong XP, Repetski JE, Marone F, Stampanoni M, Donoghue PC. The origin of conodonts and of vertebrate mineralized skeletons. Nature. 502: 546-9. PMID 24132236 DOI: 10.1038/nature12645  0.8
2013 Murdock DJ, Sansom IJ, Donoghue PC. Cutting the first 'teeth': a new approach to functional analysis of conodont elements. Proceedings. Biological Sciences / the Royal Society. 280: 20131524. PMID 23945689 DOI: 10.1098/rspb.2013.1524  0.778
2013 Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ. miRNAs: small genes with big potential in metazoan phylogenetics. Molecular Biology and Evolution. 30: 2369-82. PMID 23913097 DOI: 10.1093/Molbev/Mst133  0.73
2013 Fang H, Oates ME, Pethica RB, Greenwood JM, Sardar AJ, Rackham OJ, Donoghue PC, Stamatakis A, de Lima Morais DA, Gough J. A daily-updated tree of (sequenced) life as a reference for genome research. Scientific Reports. 3: 2015. PMID 23778980 DOI: 10.1038/Srep02015  0.53
2013 Dong XP, Cunningham JA, Bengtson S, Thomas CW, Liu J, Stampanoni M, Donoghue PC. Embryos, polyps and medusae of the Early Cambrian scyphozoan Olivooides. Proceedings. Biological Sciences / the Royal Society. 280: 20130071. PMID 23446532 DOI: 10.1098/rspb.2013.0071  0.573
2013 Joyce WG, Parham JF, Lyson TR, Warnock RCM, Donoghue PCJ. A divergence dating analysis of turtles using fossil calibrations: An example of best practices Journal of Paleontology. 87: 612-634. DOI: 10.1666/12-149  0.745
2012 Tarver JE, Donoghue PC, Peterson KJ. Do miRNAs have a deep evolutionary history? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 857-66. PMID 22847169 DOI: 10.1002/Bies.201200055  0.658
2012 Jones D, Evans AR, Rayfield EJ, Siu KK, Donoghue PC. Testing microstructural adaptation in the earliest dental tools. Biology Letters. 8: 952-5. PMID 22764115 DOI: 10.1098/Rsbl.2012.0487  0.563
2012 dos Reis M, Inoue J, Hasegawa M, Asher RJ, Donoghue PC, Yang Z. Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny. Proceedings. Biological Sciences / the Royal Society. 279: 3491-500. PMID 22628470 DOI: 10.1098/Rspb.2012.0683  0.553
2012 Shimeld SM, Donoghue PC. Evolutionary crossroads in developmental biology: cyclostomes (lamprey and hagfish). Development (Cambridge, England). 139: 2091-9. PMID 22619386 DOI: 10.1242/dev.074716  0.306
2012 Jones D, Evans AR, Siu KK, Rayfield EJ, Donoghue PC. The sharpest tools in the box? Quantitative analysis of conodont element functional morphology. Proceedings. Biological Sciences / the Royal Society. 279: 2849-54. PMID 22418253 DOI: 10.1098/rspb.2012.0147  0.576
2012 Cunningham JA, Thomas CW, Bengtson S, Kearns SL, Xiao S, Marone F, Stampanoni M, Donoghue PC. Distinguishing geology from biology in the Ediacaran Doushantuo biota relaxes constraints on the timing of the origin of bilaterians. Proceedings. Biological Sciences / the Royal Society. 279: 2369-76. PMID 22319125 DOI: 10.1098/Rspb.2011.2280  0.565
2012 Cunningham JA, Thomas CW, Bengtson S, Marone F, Stampanoni M, Turner FR, Bailey JV, Raff RA, Raff EC, Donoghue PC. Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils. Proceedings. Biological Sciences / the Royal Society. 279: 1857-64. PMID 22158954 DOI: 10.1098/Rspb.2011.2064  0.541
2012 Parham JF, Donoghue PC, Bell CJ, Calway TD, Head JJ, Holroyd PA, Inoue JG, Irmis RB, Joyce WG, Ksepka DT, Patané JS, Smith ND, Tarver JE, van Tuinen M, Yang Z, et al. Best practices for justifying fossil calibrations. Systematic Biology. 61: 346-59. PMID 22105867 DOI: 10.1093/Sysbio/Syr107  0.793
2012 Warnock RC, Yang Z, Donoghue PC. Exploring uncertainty in the calibration of the molecular clock. Biology Letters. 8: 156-9. PMID 21865245 DOI: 10.1098/Rsbl.2011.0710  0.769
2011 Gai Z, Donoghue PC, Zhu M, Janvier P, Stampanoni M. Fossil jawless fish from China foreshadows early jawed vertebrate anatomy. Nature. 476: 324-7. PMID 21850106 DOI: 10.1038/nature10276  0.566
2011 Clarke JT, Warnock RC, Donoghue PC. Establishing a time-scale for plant evolution. The New Phytologist. 192: 266-301. PMID 21729086 DOI: 10.1111/J.1469-8137.2011.03794.X  0.736
2011 Murdock DJ, Donoghue PC. Evolutionary origins of animal skeletal biomineralization. Cells, Tissues, Organs. 194: 98-102. PMID 21625061 DOI: 10.1159/000324245  0.8
2011 Tarver JE, Donoghue PC. The trouble with topology: phylogenies without fossils provide a revisionist perspective of evolutionary history in topological analyses of diversity. Systematic Biology. 60: 700-12. PMID 21436106 DOI: 10.1093/Sysbio/Syr018  0.727
2011 Tarver JE, Donoghue PC, Benton MJ. Is evolutionary history repeatedly rewritten in light of new fossil discoveries? Proceedings. Biological Sciences / the Royal Society. 278: 599-604. PMID 20810435 DOI: 10.1098/Rspb.2010.0663  0.767
2010 Inoue J, Donoghue PC, Yang Z. The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times. Systematic Biology. 59: 74-89. PMID 20525621 DOI: 10.1093/Sysbio/Syp078  0.534
2010 Harvey TH, Dong X, Donoghue PC. Are palaeoscolecids ancestral ecdysozoans? Evolution & Development. 12: 177-200. PMID 20433458 DOI: 10.1111/j.1525-142X.2010.00403.x  0.364
2009 Downs JP, Donoghue PC. Skeletal histology of Bothriolepis canadensis (Placodermi, Antiarchi) and evolution of the skeleton at the origin of jawed vertebrates. Journal of Morphology. 270: 1364-80. PMID 19533688 DOI: 10.1002/Jmor.10765  0.757
2009 Donoghue PC, Purnell MA. Distinguishing heat from light in debate over controversial fossils. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 178-89. PMID 19204990 DOI: 10.1002/Bies.200800128  0.768
2009 Donoghue PCJ, Purnell MA. The Evolutionary Emergence of Vertebrates From Among Their Spineless Relatives Evolution: Education and Outreach. 2: 204-212. DOI: 10.1007/S12052-009-0134-3  0.775
2008 Raff EC, Schollaert KL, Nelson DE, Donoghue PC, Thomas CW, Turner FR, Stein BD, Dong X, Bengtson S, Huldtgren T, Stampanoni M, Chongyu Y, Raff RA. Embryo fossilization is a biological process mediated by microbial biofilms. Proceedings of the National Academy of Sciences of the United States of America. 105: 19360-5. PMID 19047625 DOI: 10.1073/Pnas.0810106105  0.534
2008 Gostling NJ, Thomas CW, Greenwood JM, Dong X, Bengtson S, Raff EC, Raff RA, Degnan BM, Stampanoni M, Donoghue PC. Deciphering the fossil record of early bilaterian embryonic development in light of experimental taphonomy. Evolution & Development. 10: 339-49. PMID 18460095 DOI: 10.1111/J.1525-142X.2008.00242.X  0.653
2008 Sansom RS, Rodygin SA, Donoghue PCJ. The anatomy, affinity and phylogenetic significance of Ilemoraspis kirkinskayae (osteostraci) from the Devonian of Siberia Journal of Vertebrate Paleontology. 28: 613-625. DOI: 10.1671/0272-4634(2008)28[613:TAAAPS]2.0.CO;2  0.741
2008 Donoghue PCJ, Purnell MA, Aldridge RJ, Zhang S. The interrelationships of 'complex' conodonts (Vertebrata) Journal of Systematic Palaeontology. 6: 119-153. DOI: 10.1017/S1477201907002234  0.788
2007 Donoghue PC, Benton MJ. Rocks and clocks: calibrating the Tree of Life using fossils and molecules. Trends in Ecology & Evolution. 22: 424-31. PMID 17573149 DOI: 10.1016/J.Tree.2007.05.005  0.458
2007 Benton MJ, Donoghue PC. Paleontological evidence to date the tree of life. Molecular Biology and Evolution. 24: 26-53. PMID 17047029 DOI: 10.1093/Molbev/Msl150  0.468
2006 Donoghue PC, Sansom IJ, Downs JP. Early evolution of vertebrate skeletal tissues and cellular interactions, and the canalization of skeletal development. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 306: 278-94. PMID 16555304 DOI: 10.1002/Jez.B.21090  0.738
2005 Donoghue PC, Purnell MA. Genome duplication, extinction and vertebrate evolution. Trends in Ecology & Evolution. 20: 312-9. PMID 16701387 DOI: 10.1016/J.Tree.2005.04.008  0.774
2002 Donoghue PC, Sansom IJ. Origin and early evolution of vertebrate skeletonization. Microscopy Research and Technique. 59: 352-72. PMID 12430166 DOI: 10.1002/jemt.10217  0.335
2000 Donoghue PC, Forey PL, Aldridge RJ. Conodont affinity and chordate phylogeny. Biological Reviews of the Cambridge Philosophical Society. 75: 191-251. PMID 10881388 DOI: 10.1111/J.1469-185X.1999.Tb00045.X  0.765
1999 Donoghue PCJ, Purnell MA. Growth, function, and the conodont fossil record Geology. 27: 251-254. DOI: 10.1130/0091-7613(1999)027<0251:GFATCF>2.3.CO  0.711
1998 Donoghue PCJ, Purnell MA, Aldridge RJ. Conodont anatomy, chordate phylogeny and vertebrate classification Lethaia. 31: 211-219. DOI: 10.1111/J.1502-3931.1998.Tb00509.X  0.787
1997 Shunxin Z, Aldridge RJ, Donoghue PCJ. An Early Triassic conodont with periodic growth? Journal of Micropalaeontology. 16: 65-72. DOI: 10.1144/Jm.16.1.65  0.726
1995 Purnell MA, Aldridge RJ, Donoghue PCJ, Gabbott SE. Conodonts and the first vertebrates Endeavour. 19: 20-27. DOI: 10.1016/0160-9327(95)98890-R  0.765
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