Elizabeth A Hadly - Publications

Stanford University, Palo Alto, CA 
Evolution, ecology, paleobiology, global change, environment, morphology, population

54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Solari KA, Hadly EA. Experimental study of hypoxia-induced changes in gene expression in an Asian pika, Ochotona dauurica. Plos One. 15: e0240435. PMID 33044983 DOI: 10.1371/journal.pone.0240435  1
2019 Natesh M, Taylor RW, Truelove NK, Hadly EA, Palumbi SR, Petrov DA, Ramakrishnan U. Empowering conservation practice with efficient and economical genotyping from poor quality samples. Methods in Ecology and Evolution. 10: 853-859. PMID 31511786 DOI: 10.1111/2041-210X.13173  1
2018 Solari KA, Ramakrishnan U, Hadly EA. Gene expression is implicated in the ability of pikas to occupy Himalayan elevational gradient. Plos One. 13: e0207936. PMID 30540800 DOI: 10.1371/journal.pone.0207936  1
2018 Frank HK, Boyd SD, Hadly EA. Global fingerprint of humans on the distribution of Bartonella bacteria in mammals. Plos Neglected Tropical Diseases. 12: e0006865. PMID 30439961 DOI: 10.1371/journal.pntd.0006865  1
2018 Solari KA, Hadly EA. Evolution for extreme living: variation in mitochondrial cytochrome c oxidase genes correlated with elevation in pikas (genus Ochotona). Integrative Zoology. PMID 29851233 DOI: 10.1111/1749-4877.12332  1
2017 Hsu JL, Crawford JC, Tammone MN, Ramakrishnan U, Lacey EA, Hadly EA. Genomic data reveal a loss of diversity in two species of tuco-tucos (genus Ctenomys) following a volcanic eruption. Scientific Reports. 7: 16227. PMID 29176629 DOI: 10.1038/s41598-017-16430-1  1
2017 Perkins ML, Frank HK, Pauly JM, Hadly EA. Frequency shifting reduces but does not eliminate acoustic interference between echolocating bats: A theoretical analysis. The Journal of the Acoustical Society of America. 142: 2133. PMID 29092549 DOI: 10.1121/1.5006928  1
2017 Wu Y, Wang H, Wang H, Hadly EA. Rethinking the Origin of Primates by Reconstructing Their Diel Activity Patterns Using Genetics and Morphology. Scientific Reports. 7: 11837. PMID 28928374 DOI: 10.1038/s41598-017-12090-3  1
2017 Frank HK, Frishkoff LO, Mendenhall CD, Daily GC, Hadly EA. Phylogeny, Traits, and Biodiversity of a Neotropical Bat Assemblage: Close Relatives Show Similar Responses to Local Deforestation. The American Naturalist. 190: 200-212. PMID 28731793 DOI: 10.1086/692534  1
2017 Wu Y, Wang H, Hadly EA. Invasion of Ancestral Mammals into Dim-light Environments Inferred from Adaptive Evolution of the Phototransduction Genes. Scientific Reports. 7: 46542. PMID 28425474 DOI: 10.1038/srep46542  1
2017 Barnosky AD, Hadly EA, Gonzalez P, Head J, Polly PD, Lawing AM, Eronen JT, Ackerly DD, Alex K, Biber E, Blois J, Brashares J, Ceballos G, Davis E, Dietl GP, et al. Merging paleobiology with conservation biology to guide the future of terrestrial ecosystems. Science (New York, N.Y.). 355. PMID 28183912 DOI: 10.1126/science.aah4787  1
2016 Dahal N, Lissovsky AA, Lin Z, Solari K, Hadly EA, Zhan X, Ramakrishnan U. Corrigendum to "Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya" [Mol. Phylogenet. Evol. 106 (2017) 55-60]. Molecular Phylogenetics and Evolution. PMID 27888666 DOI: 10.1016/j.ympev.2016.11.010  1
2016 Wu Y, Hadly EA, Teng W, Hao Y, Liang W, Liu Y, Wang H. Corrigendum: Retinal transcriptome sequencing sheds light on the adaptation to nocturnal and diurnal lifestyles in raptors. Scientific Reports. 6: 35895. PMID 27821873 DOI: 10.1038/srep35895  1
2016 Marcy AE, Hadly EA, Sherratt E, Garland K, Weisbecker V. Getting a head in hard soils: Convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys). Bmc Evolutionary Biology. 16: 207. PMID 27724858 DOI: 10.1186/s12862-016-0782-1  1
2016 Wu Y, Hadly EA, Teng W, Hao Y, Liang W, Liu Y, Wang H. Retinal transcriptome sequencing sheds light on the adaptation to nocturnal and diurnal lifestyles in raptors. Scientific Reports. 6: 33578. PMID 27645106 DOI: 10.1038/srep33578  1
2016 Dahal N, Lissovsky AA, Lin Z, Solari K, Hadly EA, Zhan X, Ramakrishnan U. Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya. Molecular Phylogenetics and Evolution. PMID 27640954 DOI: 10.1016/j.ympev.2016.09.015  1
2016 Frank HK, Mendenhall CD, Judson SD, Daily GC, Hadly EA. Anthropogenic impacts on Costa Rican bat parasitism are sex specific. Ecology and Evolution. 6: 4898-909. PMID 27547321 DOI: 10.1002/ece3.2245  1
2016 Frishkoff LO, Karp DS, Flanders JR, Zook J, Hadly EA, Daily GC, M'Gonigle LK. Climate change and habitat conversion favour the same species. Ecology Letters. PMID 27396714 DOI: 10.1111/ele.12645  1
2016 Goldberg A, Mychajliw AM, Hadly EA. Post-invasion demography of prehistoric humans in South America Nature. 532: 232-235. PMID 27049941 DOI: 10.1038/nature17176  1
2015 Barnosky AD, Lindsey EL, Villavicencio NA, Bostelmann E, Hadly EA, Wanket J, Marshall CR. Variable impact of late-Quaternary megafaunal extinction in causing ecological state shifts in North and South America. Proceedings of the National Academy of Sciences of the United States of America. PMID 26504219 DOI: 10.1073/pnas.1505295112  1
2015 Frishkoff LO, Hadly EA, Daily GC. Thermal niche predicts tolerance to habitat conversion in tropical amphibians and reptiles. Global Change Biology. 21: 3901-16. PMID 26148337 DOI: 10.1111/gcb.13016  1
2014 Karp DS, Judson S, Daily GC, Hadly EA. Molecular diagnosis of bird-mediated pest consumption in tropical farmland. Springerplus. 3: 630. PMID 25392800 DOI: 10.1186/2193-1801-3-630  1
2014 Frishkoff LO, Karp DS, M'Gonigle LK, Mendenhall CD, Zook J, Kremen C, Hadly EA, Daily GC. Loss of avian phylogenetic diversity in neotropical agricultural systems. Science (New York, N.Y.). 345: 1343-6. PMID 25214627 DOI: 10.1126/science.1254610  1
2014 Mendenhall CD, Karp DS, Meyer CF, Hadly EA, Daily GC. Predicting biodiversity change and averting collapse in agricultural landscapes. Nature. 509: 213-7. PMID 24739971 DOI: 10.1038/nature13139  1
2014 Bay RA, Ramakrishnan U, Hadly EA. A call for tiger management using "reserves" of genetic diversity. The Journal of Heredity. 105: 295-302. PMID 24336928 DOI: 10.1093/jhered/est086  1
2013 Karp DS, Mendenhall CD, Sandí RF, Chaumont N, Ehrlich PR, Hadly EA, Daily GC. Forest bolsters bird abundance, pest control and coffee yield. Ecology Letters. 16: 1339-47. PMID 23981013 DOI: 10.1111/ele.12173  1
2013 Hadly EA. Ecology: Getting the word out on biosphere crisis. Nature. 497: 565. PMID 23719454 DOI: 10.1038/497565b  0.01
2013 Marcy AE, Fendorf S, Patton JL, Hadly EA. Morphological adaptations for digging and climate-impacted soil properties define pocket gopher (Thomomys spp.) distributions. Plos One. 8: e64935. PMID 23717675 DOI: 10.1371/journal.pone.0064935  1
2013 Tomimatsu H, Sasaki T, Kurokawa H, Bridle JR, Fontaine C, Kitano J, Stouffer DB, Vellend M, Bezemer TM, Fukami T, Hadly EA, van der Heijden MGA, Kawata M, Kéfi S, Kraft NJB, et al. FORUM: Sustaining ecosystem functions in a changing world: A call for an integrated approach Journal of Applied Ecology. 50: 1124-1130. DOI: 10.1111/1365-2664.12116  1
2012 Barnosky AD, Hadly EA, Bascompte J, Berlow EL, Brown JH, Fortelius M, Getz WM, Harte J, Hastings A, Marquet PA, Martinez ND, Mooers A, Roopnarine P, Vermeij G, Williams JW, et al. Approaching a state shift in Earth's biosphere. Nature. 486: 52-8. PMID 22678279 DOI: 10.1038/nature11018  1
2012 McMenamin SK, Hadly EA. Ancient DNA assessment of tiger salamander population in Yellowstone National Park. Plos One. 7: e32763. PMID 22427878 DOI: 10.1371/journal.pone.0032763  1
2011 Chan YL, Hadly EA. Genetic variation over 10,000 years in Ctenomys: comparative phylochronology provides a temporal perspective on rarity, environmental change and demography. Molecular Ecology. 20: 4592-605. PMID 22008209 DOI: 10.1111/j.1365-294X.2011.05295.x  1
2010 Blois JL, McGuire JL, Hadly EA. Small mammal diversity loss in response to late-Pleistocene climatic change. Nature. 465: 771-4. PMID 20495547 DOI: 10.1038/nature09077  1
2010 McMenamin SK, Hadly EA. Developmental dynamics of Ambystoma tigrinum in a changing landscape. Bmc Ecology. 10: 10. PMID 20361876 DOI: 10.1186/1472-6785-10-10  1
2009 Wake DB, Hadly EA, Ackerly DD. Biogeography, changing climates, and niche evolution: Biogeography, changing climates, and niche evolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 19631-6. PMID 19918080 DOI: 10.1073/pnas.0911097106  1
2009 Hadly EA, Spaeth PA, Li C. Niche conservatism above the species level. Proceedings of the National Academy of Sciences of the United States of America. 106: 19707-14. PMID 19897730 DOI: 10.1073/pnas.0901648106  1
2009 O'Keefe K, Ramakrishnan U, VAN Tuinen M, Hadly EA. Source-sink dynamics structure a common montane mammal. Molecular Ecology. 18: 4775-89. PMID 19863718 DOI: 10.1111/j.1365-294X.2009.04382.x  1
2009 Ramakrishnan U, Hadly EA. Do complex population histories drive higher estimates of substitution rate in phylogenetic reconstructions? Molecular Ecology. 18: 4341-3. PMID 19845859 DOI: 10.1111/j.1365-294X.2009.04334.x  1
2009 Ramakrishnan U, Hadly EA. Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Molecular Ecology. 18: 1310-30. PMID 19281471 DOI: 10.1111/j.1365-294X.2009.04092.x  1
2008 McMenamin SK, Hadly EA, Wright CK. Climatic change and wetland desiccation cause amphibian decline in Yellowstone National Park. Proceedings of the National Academy of Sciences of the United States of America. 105: 16988-93. PMID 18955700 DOI: 10.1073/pnas.0809090105  1
2008 Van Tuinen M, O'Keefe K, Ramakrishnan U, Hadly EA. Fire and ice: genetic structure of the Uinta ground squirrel (Spermophilus armatus) across the Yellowstone hotspot. Molecular Ecology. 17: 1776-88. PMID 18284571 DOI: 10.1111/j.1365-294X.2008.03671.x  1
2007 Feranec RS, Hadly EA, Paytan A. Determining landscape use of Holocene mammals using strontium isotopes. Oecologia. 153: 943-50. PMID 17593400 DOI: 10.1007/s00442-007-0779-y  1
2007 Newsome SD, Etnier MA, Gifford-Gonzalez D, Phillips DL, van Tuinen M, Hadly EA, Costa DP, Kennett DJ, Guilderson TP, Koch PL. The shifting baseline of northern fur seal ecology in the northeast Pacific Ocean. Proceedings of the National Academy of Sciences of the United States of America. 104: 9709-14. PMID 17526720 DOI: 10.1073/pnas.0610986104  1
2006 Chan YL, Anderson CN, Hadly EA. Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. Plos Genetics. 2: e59. PMID 16636697 DOI: 10.1371/journal.pgen.0020059  1
2005 Chan YL, Lacey EA, Pearson OP, Hadly EA. Ancient DNA reveals Holocene loss of genetic diversity in a South American rodent. Biology Letters. 1: 423-6. PMID 17148223 DOI: 10.1098/rsbl.2005.0354  1
2005 McGill BJ, Hadly EA, Maurer BA. Community inertia of Quaternary small mammal assemblages in North America. Proceedings of the National Academy of Sciences of the United States of America. 102: 16701-6. PMID 16260748 DOI: 10.1073/pnas.0504225102  1
2005 Bruzgul JE, Long W, Hadly EA. Temporal response of the tiger salamander (Ambystoma tigrinum) to 3,000 years of climatic variation. Bmc Ecology. 5: 7. PMID 16159383 DOI: 10.1186/1472-6785-5-7  0.32
2005 Ramakrishnan U, Hadly EA, Mountain JL. Detecting past population bottlenecks using temporal genetic data. Molecular Ecology. 14: 2915-22. PMID 16101762 DOI: 10.1111/j.1365-294X.2005.02586.x  1
2005 Anderson CN, Ramakrishnan U, Chan YL, Hadly EA. Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics (Oxford, England). 21: 1733-4. PMID 15564305 DOI: 10.1093/bioinformatics/bti154  1
2004 van Tuinen M, Ramakrishnan U, Hadly EA. Studying the effect of environmental change on biotic evolution: past genetic contributions, current work and future directions. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 362: 2795-820. PMID 15539371 DOI: 10.1098/rsta.2004.1465  1
2004 van Tuinen M, Hadly EA. Error in estimation of rate and time inferred from the early amniote fossil record and avian molecular clocks. Journal of Molecular Evolution. 59: 267-76. PMID 15486700 DOI: 10.1007/s00239-004-2624-9  1
2004 Hadly EA, Ramakrishnan U, Chan YL, van Tuinen M, O'Keefe K, Spaeth PA, Conroy CJ. Genetic response to climatic change: insights from ancient DNA and phylochronology. Plos Biology. 2: e290. PMID 15361933 DOI: 10.1371/journal.pbio.0020290  1
2004 Smith FA, Brown JH, Haskell JP, Lyons SK, Alroy J, Charnov EL, Dayan T, Enquist BJ, Ernest SK, Hadly EA, Jones KE, Kaufman DM, Marquet PA, Maurer BA, Niklas KJ, et al. Similarity of mammalian body size across the taxonomic hierarchy and across space and time. The American Naturalist. 163: 672-91. PMID 15122486 DOI: 10.1086/382898  1
2003 Morgan Ernest SK, Enquist BJ, Brown JH, Charnov EL, Gillooly JF, Savage VM, White EP, Smith FA, Hadly EA, Haskell JP, Lyons SK, Maurer BA, Niklas KJ, Tiffney B. Thermodynamic and metabolic effects on the scaling of production and population energy use Ecology Letters. 6: 990-995. DOI: 10.1046/j.1461-0248.2003.00526.x  1
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