Ashley Teufel, Ph.D - Related publications

Affiliations: 
2010-2015 Molecular Biology University of Wyoming, Laramie, WY, United States 
 2015- Integrative Biology University of Texas at Austin, Austin, Texas, U.S.A. 
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Acs-Szabo L, Papp LA, Sipiczki M, Miklos I. Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34682285 DOI: 10.3390/jof7100864   
2021 Li X, Li Y, Sylvester SP, Zang M, El-Kassaby YA, Fang Y. Evolutionary patterns of nucleotide substitution rates in plastid genomes of . Ecology and Evolution. 11: 13401-13414. PMID 34646478 DOI: 10.1002/ece3.8063   
2021 Young Chae G, Hong WJ, Jeong Jang M, Jung KH, Kim S. Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants. Nucleic Acids Research. PMID 34725701 DOI: 10.1093/nar/gkab932   
2021 Morgenthaler AB, Fritts RK, Copley SD. Amplicon remodeling and genomic mutations drive population dynamics after segmental amplification. Molecular Biology and Evolution. PMID 34581806 DOI: 10.1093/molbev/msab289   
2021 Awan F, Ali MM, Hamid M, Awan MH, Mushtaq MH, Kalsoom S, Ijaz M, Mehmood K, Liu Y. Epi-Gene: An R-Package for Easy Pan-Genome Analysis. Biomed Research International. 2021: 5585586. PMID 34595238 DOI: 10.1155/2021/5585586   
2021 Xie D, Chen G, Meng X, Wang H, Bi X, Fang M, Yang C, Zhou Y, Long E, Feng S. Comparable Number of Genes Having Experienced Positive Selection among Great Ape Species. Animals : An Open Access Journal From Mdpi. 11. PMID 34827995 DOI: 10.3390/ani11113264   
2021 Zhou P, Wang L, Liu H, Li C, Li Z, Wang J, Tan X. CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria. Nucleic Acids Research. PMID 34614159 DOI: 10.1093/nar/gkab891   
2021 Gompert Z, Feder JL, Nosil P. Natural selection drives genome-wide evolution via chance genetic associations. Molecular Ecology. PMID 34704650 DOI: 10.1111/mec.16247   
2021 Yamamoto T. Genomic Aberrations Associated with the Pathophysiological Mechanisms of Neurodevelopmental Disorders. Cells. 10. PMID 34571966 DOI: 10.3390/cells10092317   
2021 Zhuang X, Cheng CC. Propagation of a De Novo Gene under Natural Selection: Antifreeze Glycoprotein Genes and Their Evolutionary History in Codfishes. Genes. 12. PMID 34828383 DOI: 10.3390/genes12111777   
2021 Oh J, Lee SG, Park C. PIC-Me: paralogs and isoforms classifier based on machine-learning approaches. Bmc Bioinformatics. 22: 311. PMID 34674638 DOI: 10.1186/s12859-021-04229-x   
2021 Wright BW, Molloy MP, Jaschke PR. Overlapping genes in natural and engineered genomes. Nature Reviews. Genetics. PMID 34611352 DOI: 10.1038/s41576-021-00417-w   
2021 Watson AK, Lopez P, Bapteste E. Hundreds of out-of-frame remodelled gene families in the E. coli pangenome. Molecular Biology and Evolution. PMID 34792602 DOI: 10.1093/molbev/msab329   
2021 Zeng WQ, Yan HJ, Wu YZ, Wang RR, Xiao XF, Qi ZC, Yan XL. The complete chloroplast genome sequence of Japanese buttercup Thunb. Mitochondrial Dna. Part B, Resources. 6: 3186-3187. PMID 34660897 DOI: 10.1080/23802359.2021.1987166   
2021 Sun TW, Ku C. Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. Virus Evolution. 7: veab081. PMID 34754514 DOI: 10.1093/ve/veab081   
2021 Tian R, Yang C, Geng Y, Seim I, Yang G. Genomewide analysis of sperm whale E2 ubiquitin conjugating enzyme genes. Journal of Genetics. 100. PMID 34787113   
2021 Jiang N, Hu S, Peng B, Li Z, Yuan X, Xiao S, Fu Y. Genome of Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for . Frontiers in Microbiology. 12: 724451. PMID 34603250 DOI: 10.3389/fmicb.2021.724451   
2021 Hu Q, Ma Y, Mandáková T, Shi S, Chen C, Sun P, Zhang L, Feng L, Zheng Y, Feng X, Yang W, Jiang J, Li T, Zhou P, Yu Q, et al. Genome evolution of the psammophyte for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34649989 DOI: 10.1073/pnas.2025711118   
2021 Senthamizhan V, Ravindran B, Raman K. NetGenes: A Database of Essential Genes Predicted Using Features From Interaction Networks. Frontiers in Genetics. 12: 722198. PMID 34630517 DOI: 10.3389/fgene.2021.722198   
2021 Jiang S, Du Q, Feng C, Ma L, Zhang Z. CompoDynamics: a comprehensive database for characterizing sequence composition dynamics. Nucleic Acids Research. PMID 34718745 DOI: 10.1093/nar/gkab979   
2021 Jiang T, Yin Z, Cai R, Yu H, Lu Q, Zhao S, Tian Y, Yan Y, Chen X, Guo J. Chromosomal-level Genome Assembly of a True Bug, Aspongopus chinensis Dallas, 1851 (Hemiptera: Dinidoridae). Genome Biology and Evolution. PMID 34623414 DOI: 10.1093/gbe/evab232   
2021 Caicedo-Montoya C, Manzo-Ruiz M, Ríos-Estepa R. Pan-Genome of the Genus and Prioritization of Biosynthetic Gene Clusters With Potential to Produce Antibiotic Compounds. Frontiers in Microbiology. 12: 677558. PMID 34659136 DOI: 10.3389/fmicb.2021.677558   
2021 Fuchs S, Garrood WT, Beber A, Hammond A, Galizi R, Gribble M, Morselli G, Hui TJ, Willis K, Kranjc N, Burt A, Crisanti A, Nolan T. Resistance to a CRISPR-based gene drive at an evolutionarily conserved site is revealed by mimicking genotype fixation. Plos Genetics. 17: e1009740. PMID 34610011 DOI: 10.1371/journal.pgen.1009740   
2021 Kim P, Tan H, Liu J, Yang M, Zhou X. FusionAI: Predicting fusion breakpoint from DNA sequence with deep learning. Iscience. 24: 103164. PMID 34646994 DOI: 10.1016/j.isci.2021.103164   
2021 Chatterjee N, Zhang X. CRISPR approach in environmental chemical screening focusing on population variability. The Journal of Toxicological Sciences. 46: 499-507. PMID 34719552 DOI: 10.2131/jts.46.499   
2021 Han S, Jiao Z, Niu MX, Yu X, Huang M, Liu C, Wang HL, Zhou Y, Mao W, Wang X, Yin W, Xia X. Genome-Wide Comprehensive Analysis of the Gene Family in . International Journal of Molecular Sciences. 22. PMID 34830215 DOI: 10.3390/ijms222212336   
2021 Dewar AE, Thomas JL, Scott TW, Wild G, Griffin AS, West SA, Ghoul M. Plasmids do not consistently stabilize cooperation across bacteria but may promote broad pathogen host-range. Nature Ecology & Evolution. PMID 34750532 DOI: 10.1038/s41559-021-01573-2   
2021 Zhou J, Wu P, Xiong Z, Liu N, Zhao N, Ji M, Qiu Y, Yang B. Chromosome-Level Genome Assembly Reveals Significant Gene Expansion in the Toll and IMD Signaling Pathways of . Frontiers in Genetics. 12: 728418. PMID 34777464 DOI: 10.3389/fgene.2021.728418   
2021 Denoyelle L, de Villemereuil P, Boyer F, Khelifi M, Gaffet C, Alberto F, Benjelloun B, Pompanon F. Genetic Variations and Differential DNA Methylation to Face Contrasted Climates in Small Ruminants: An Analysis on Traditionally-Managed Sheep and Goats. Frontiers in Genetics. 12: 745284. PMID 34650601 DOI: 10.3389/fgene.2021.745284   
2021 Yocca AE, Edger PP. Current status and future perspectives on the evolution of cis-regulatory elements in plants. Current Opinion in Plant Biology. 65: 102139. PMID 34837823 DOI: 10.1016/j.pbi.2021.102139   
2021 Zhang Y, Liu Y, Ge Q, Han K, Shi C, Liu X. The complete chloroplast genome of a shrub species, (Smilacaceae) from Guangdong, China. Mitochondrial Dna. Part B, Resources. 6: 3064-3066. PMID 34595338 DOI: 10.1080/23802359.2021.1979431   
2021 Zhou S, Wu Y, Xie ZX, Jia B, Yuan YJ. Directed genome evolution driven by structural rearrangement techniques. Chemical Society Reviews. PMID 34651628 DOI: 10.1039/d1cs00722j   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Peterson KA, Murray SA. Progress towards completing the mutant mouse null resource. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 34698892 DOI: 10.1007/s00335-021-09905-0   
2021 Gaikani H, Giaever G, Nislow C. Chemical-Genetic Interactions as a Means to Characterize Drug Synergy. Methods in Molecular Biology (Clifton, N.J.). 2381: 243-263. PMID 34590281 DOI: 10.1007/978-1-0716-1740-3_14   
2021 Li Y, Sun J, Ci X, Li J, Wang D, Xu Y, Cai N. The complete chloroplast genome of . Mitochondrial Dna. Part B, Resources. 6: 3140-3141. PMID 34746384 DOI: 10.1080/23802359.2020.1806131   
2021 Alexandrino AO, Oliveira AR, Dias U, Dias Z. Incorporating intergenic regions into reversal and transposition distances with indels. Journal of Bioinformatics and Computational Biology. 2140011. PMID 34775923 DOI: 10.1142/S0219720021400114   
2021 Cui M, Lin L, Guo H, Zhang D, Zhang J, Cheng W, Song X, Xing Z, Long Y. /computational analysis of mevalonate pyrophosphate decarboxylase gene families in . Open Life Sciences. 16: 1022-1036. PMID 34616915 DOI: 10.1515/biol-2021-0103   
2021 Evans BJ, Peter BM, Melnick DJ, Andayani N, Supriatna J, Zhu J, Tosi AJ. Mitonuclear interactions and introgression genomics of macaque monkeys () highlight the influence of behaviour on genome evolution. Proceedings. Biological Sciences. 288: 20211756. PMID 34610767 DOI: 10.1098/rspb.2021.1756   
2021 Wang G, Bai X, Cao P, Han J, Zhang Z. The complete chloroplast genome of Hemsl. (Aristolochiaceae: L.). Mitochondrial Dna. Part B, Resources. 6: 3257-3258. PMID 34693016 DOI: 10.1080/23802359.2021.1992317   
2021 Kim P, Tan H, Liu J, Lee H, Jung H, Kumar H, Zhou X. FusionGDB 2.0: fusion gene annotation updates aided by deep learning. Nucleic Acids Research. PMID 34755868 DOI: 10.1093/nar/gkab1056   
2021 Pema Y, Ma C, Bautista MAC, Chen T. The complete chloroplast genome sequence of the Tibetan herb (Benth. ex Hook.f.) Mathiesen (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 3261-3262. PMID 34693018 DOI: 10.1080/23802359.2021.1993459   
2021 Li G, Guo W, Zhang Y, Cao G, Wang Z. Complete mitochondrial genome of (Artiodactyla: Cervidae). Mitochondrial Dna. Part B, Resources. 6: 3372-3374. PMID 34778556 DOI: 10.1080/23802359.2021.1997118   
2021 Lu H, Li F, Yuan L, Domenzain I, Yu R, Wang H, Li G, Chen Y, Ji B, Kerkhoven EJ, Nielsen J. Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection. Molecular Systems Biology. 17: e10427. PMID 34676984 DOI: 10.15252/msb.202110427   
2021 Lee S, Choi CH, Yun MR, Kim DW, Kim SS, Choi YK, Choi YS. Evaluation of global evolutionary variations in the early stage of SARS-CoV-2 pandemic. Heliyon. e08170. PMID 34660919 DOI: 10.1016/j.heliyon.2021.e08170   
2021 Chiurazzi MJ, Nørrevang AF, García P, Cerdán PD, Palmgren MB, Wenkel S. Controlling flowering of Medicago sativa (alfalfa) by inducing dominant mutations. Journal of Integrative Plant Biology. PMID 34761872 DOI: 10.1111/jipb.13186   
2021 Wen G, Chen S, Fan L, Zeng L, Xu B. The complete chloroplast genome of H.S.Lo (Menispermaceae), an important traditional medicine from South China. Mitochondrial Dna. Part B, Resources. 6: 3269-3270. PMID 34712807 DOI: 10.1080/23802359.2021.1993099   
2021 White ND, Batz ZA, Braun EL, Braun MJ, Carleton KL, Kimball RT, Swaroop A. A novel exome probe set captures phototransduction genes across birds (Aves) enabling efficient analysis of vision evolution. Molecular Ecology Resources. PMID 34652059 DOI: 10.1111/1755-0998.13496   
2021 Liu Y, Hu Z, Deng Y, Shang L, Gobler CJ, Tang YZ. Dependence of genome size and copy number of rRNA gene on cell volume in dinoflagellates. Harmful Algae. 109: 102108. PMID 34815026 DOI: 10.1016/j.hal.2021.102108   
2021 Zhou Q, Jiao L, Li W, Hu Z, Li Y, Zhang H, Yang M, Xu L, Yan Y. A Novel Cre/-Based Genetic Tool for Repeated, Targeted and Markerless Gene Integration in . International Journal of Molecular Sciences. 22. PMID 34639080 DOI: 10.3390/ijms221910739