Matthew C. Brandley, Ph.D. - Publications

University of Sydney, Camperdown, New South Wales, Australia 

43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Warren DL, Eytan RI, Dornburg A, Iglesias TL, Brandley MC, Wainwright PC. Reevaluating claims of ecological speciation in . Ecology and Evolution. 11: 11449-11456. PMID 34429932 DOI: 10.1002/ece3.7936  1
2020 Foster CSP, Thompson MB, Van Dyke JU, Brandley MC, Whittington CM. Emergence of an evolutionary innovation: Gene expression differences associated with the transition between oviparity and viviparity. Molecular Ecology. PMID 32153075 DOI: 10.1111/Mec.15409  1
2017 Hendrawan K, Whittington CM, Brandley MC, Belov K, Thompson MB. The Regulation of Uterine Proinflammatory Gene Expression during Pregnancy in the Live-Bearing Lizard, Pseudemoia entrecasteauxii. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 28296138 DOI: 10.1002/Jez.B.22733  1
2017 Liu J, Organ CL, Benton MJ, Brandley MC, Aitchison JC. Live birth in an archosauromorph reptile. Nature Communications. 8: 14445. PMID 28195584 DOI: 10.1038/Ncomms14445  0.01
2016 Griffith OW, Brandley MC, Belov K, Thompson MB. Reptile pregnancy is underpinned by complex changes in uterine gene expression: a comparative analysis of the uterine transcriptome in viviparous and oviparous lizards. Genome Biology and Evolution. PMID 27635053 DOI: 10.1093/Gbe/Evw229  1
2016 Muñoz MM, Langham GM, Brandley MC, Rosauer D, Williams SE, Moritz C. Basking behavior predicts the evolution of heat tolerance in Australian rainforest lizards. Evolution; International Journal of Organic Evolution. PMID 27612295 DOI: 10.1111/Evo.13064  1
2016 Griffith OW, Brandley MC, Whittington CM, Belov K, Thompson MB. Comparative genomics of hormonal signaling in the chorioallantoic membrane of oviparous and viviparous amniotes. General and Comparative Endocrinology. PMID 27102939 DOI: 10.1016/J.Ygcen.2016.04.017  1
2016 Griffith OW, Brandley MC, Belov K, Thompson MB. Allelic expression of mammalian imprinted genes in a matrotrophic lizard, Pseudemoia entrecasteauxii. Development Genes and Evolution. PMID 26943808 DOI: 10.1007/S00427-016-0531-X  1
2015 Wright AM, Lyons KM, Brandley MC, Hillis DM. Which came first: The lizard or the egg? Robustness in phylogenetic reconstruction of ancestral states. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 324: 504-16. PMID 26227660 DOI: 10.1002/Jez.B.22642  1
2015 Brandley MC, Bragg JG, Singhal S, Chapple DG, Jennings CK, Lemmon AR, Lemmon EM, Thompson MB, Moritz C. Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards. Bmc Evolutionary Biology. 15: 62. PMID 25880916 DOI: 10.1186/S12862-015-0318-0  1
2015 Iglesias TL, Dornburg A, Brandley MC, Alfaro ME, Warren DL. Life in the unthinking depths: energetic constraints on encephalization in marine fishes. Journal of Evolutionary Biology. 28: 1080-90. PMID 25818759 DOI: 10.1111/Jeb.12631  1
2015 Griffith OW, Blackburn DG, Brandley MC, Van Dyke JU, Whittington CM, Thompson MB. Ancestral state reconstructions require biological evidence to test evolutionary hypotheses: A case study examining the evolution of reproductive mode in squamate reptiles. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 25732809 DOI: 10.1002/Jez.B.22614  1
2014 Brandley MC, Kuriyama T, Hasegawa M. Snake and bird predation drive the repeated convergent evolution of correlated life history traits and phenotype in the Izu Island Scincid lizard (Plestiodon latiscutatus). Plos One. 9: e92233. PMID 24667496 DOI: 10.1371/Journal.Pone.0092233  1
2014 Near TJ, Dornburg A, Tokita M, Suzuki D, Brandley MC, Friedman M. Boom and bust: ancient and recent diversification in bichirs (Polypteridae: Actinopterygii), a relictual lineage of ray-finned fishes. Evolution; International Journal of Organic Evolution. 68: 1014-26. PMID 24274466 DOI: 10.1111/Evo.12323  1
2014 Van Dyke JU, Brandley MC, Thompson MB. The evolution of viviparity: molecular and genomic data from squamate reptiles advance understanding of live birth in amniotes. Reproduction (Cambridge, England). 147: R15-26. PMID 24129151 DOI: 10.1530/Rep-13-0309  1
2014 Brandley MC, Kuriyama T, Hasegawa M. A. Map of the Izu Islands and nearby mainland Japan. Plos One. DOI: 10.1371/Journal.Pone.0092233.G001  1
2013 Andrews RM, Brandley MC, Greene VW. Developmental sequences of squamate reptiles are taxon specific. Evolution & Development. 15: 326-43. PMID 24074279 DOI: 10.1111/Ede.12042  1
2012 Burbrink FT, Chen X, Myers EA, Brandley MC, Pyron RA. Evidence for determinism in species diversification and contingency in phenotypic evolution during adaptive radiation. Proceedings. Biological Sciences / the Royal Society. 279: 4817-26. PMID 23034709 DOI: 10.1098/Rspb.2012.1669  1
2012 Dornburg A, Moore JA, Webster R, Warren DL, Brandley MC, Iglesias TL, Wainwright PC, Near TJ. Molecular phylogenetics of squirrelfishes and soldierfishes (Teleostei: Beryciformes: Holocentridae): reconciling more than 100 years of taxonomic confusion. Molecular Phylogenetics and Evolution. 65: 727-38. PMID 22884866 DOI: 10.1016/J.Ympev.2012.07.020  1
2012 Murphy BF, Brandley MC, Murphy CR, Thompson MB. Morphology and development of the placentae in Eulamprus quoyii group skinks (Squamata: Scincidae). Journal of Anatomy. 220: 454-71. PMID 22420511 DOI: 10.1111/J.1469-7580.2012.01492.X  1
2012 Brandley MC, Young RL, Warren DL, Thompson MB, Wagner GP. Uterine gene expression in the live-bearing lizard, Chalcides ocellatus, reveals convergence of squamate reptile and mammalian pregnancy mechanisms. Genome Biology and Evolution. 4: 394-411. PMID 22333490 DOI: 10.1093/Gbe/Evs013  1
2012 Dornburg A, Brandley MC, McGowen MR, Near TJ. Relaxed clocks and inferences of heterogeneous patterns of nucleotide substitution and divergence time estimates across whales and dolphins (Mammalia: Cetacea). Molecular Biology and Evolution. 29: 721-36. PMID 21926070 DOI: 10.1093/Molbev/Msr228  1
2012 Brandley MC, Ota H, Hikida T, Nieto Montes De Oca A, Fería-Ortíz M, Guo X, Wang Y. The phylogenetic systematics of blue-tailed skinks (Plestiodon) and the family Scincidae Zoological Journal of the Linnean Society. 165: 163-189. DOI: 10.1111/J.1096-3642.2011.00801.X  1
2011 Brandley MC, Wang Y, Guo X, de Oca AN, Fería-Ortíz M, Hikida T, Ota H. Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards. Systematic Biology. 60: 3-15. PMID 20952756 DOI: 10.1093/Sysbio/Syq045  1
2011 Dornburg A, Warren DL, Iglesias T, Brandley MC. Natural history observations of the ichthyological and herpetological fauna on the island of Curaçao (Netherlands) Bulletin of the Peabody Museum of Natural History. 52: 181-186. DOI: 10.3374/014.052.0106  1
2011 Kuriyama T, Brandley MC, Katayama A, Mori A, Honda M, Hasegawa M. A time-calibrated phylogenetic approach to assessing the phylogeography, colonization history and phenotypic evolution of snakes in the Japanese Izu Islands Journal of Biogeography. 38: 259-271. DOI: 10.1111/J.1365-2699.2010.02403.X  1
2010 Brandley MC, Guiher TJ, Pyron RA, Winne CT, Burbrink FT. Does dispersal across an aquatic geographic barrier obscure phylogeographic structure in the diamond-backed watersnake (Nerodia rhombifer)? Molecular Phylogenetics and Evolution. 57: 552-60. PMID 20688180 DOI: 10.1016/J.Ympev.2010.07.015  1
2010 Suzuki D, Brandley MC, Tokita M. The mitochondrial phylogeny of an ancient lineage of ray-finned fishes (Polypteridae) with implications for the evolution of body elongation, pelvic fin loss, and craniofacial morphology in Osteichthyes. Bmc Evolutionary Biology. 10: 209. PMID 20624284 DOI: 10.1186/1471-2148-10-209  1
2010 Brandley MC, Wang Y, Guo X, Nieto Montes de Oca A, Fería Ortíz M, Hikida T, Ota H. Bermuda as an evolutionary life raft for an ancient lineage of endangered lizards. Plos One. 5: e11375. PMID 20614024 DOI: 10.1371/Journal.Pone.0011375  1
2010 He K, Li YJ, Brandley MC, Lin LK, Wang YX, Zhang YP, Jiang XL. A multi-locus phylogeny of Nectogalini shrews and influences of the paleoclimate on speciation and evolution. Molecular Phylogenetics and Evolution. 56: 734-46. PMID 20363345 DOI: 10.1016/J.Ympev.2010.03.039  1
2010 Suzuki D, Brandley MC, Tokita M. The mitochondrial phylogeny of an ancient lineage of ray-finned fishes (Polypteridae) with implications for the evolution of body elongation, pelvic fin loss, and craniofacial morphology in Osteichthyes. Bmc Evolutionary Biology. 10: 21. PMID 20100320 DOI: 10.1186/1471-2148-10-21  1
2010 Kohlsdorf T, Lynch VJ, Rodrigues MT, Brandley MC, Wagner GP. Data and data interpretation in the study of limb evolution: A reply to Galis et al. On the reevolution of digits in the lizard genus bachia Evolution. 64: 2477-2485. DOI: 10.1111/J.1558-5646.2010.01042.X  1
2009 Brandley MC, Warren DL, Leaché AD, McGuire JA. Homoplasy and clade support. Systematic Biology. 58: 184-98. PMID 20525577 DOI: 10.1093/Sysbio/Syp019  1
2009 Vincent SE, Brandley MC, Herrel A, Alfaro ME. Convergence in trophic morphology and feeding performance among piscivorous natricine snakes. Journal of Evolutionary Biology. 22: 1203-11. PMID 19389153 DOI: 10.1111/J.1420-9101.2009.01739.X  1
2009 Xiong Y, Brandley MC, Xu S, Zhou K, Yang G. Seven new dolphin mitochondrial genomes and a time-calibrated phylogeny of whales. Bmc Evolutionary Biology. 9: 20. PMID 19166626 DOI: 10.1186/1471-2148-9-20  1
2009 Vincent S, Brandley M, Kuriyama T, Mori A, Herrel A, Hasegawa M. Insular gigantism and dwarfism in a snake, adaptive response or spandrel to selection on gape size? Nature Precedings. 4: 1-1. DOI: 10.1038/Npre.2009.3360.1  1
2008 Brandley MC, Huelsenbeck JP, Wiens JJ. Rates and patterns in the evolution of snake-like body form in squamate reptiles: evidence for repeated re-evolution of lost digits and long-term persistence of intermediate body forms. Evolution; International Journal of Organic Evolution. 62: 2042-64. PMID 18507743 DOI: 10.1111/J.1558-5646.2008.00430.X  1
2006 Wiens JJ, Brandley MC, Reeder TW. Why does a trait evolve multiple times within a clade? Repeated evolution of snakelike body form in squamate reptiles. Evolution; International Journal of Organic Evolution. 60: 123-41. PMID 16568638 DOI: 10.1554/05-328.1  1
2006 Brandley MC, Leaché AD, Warren DL, McGuire JA. Are unequal clade priors problematic for Bayesian phylogenetics? Systematic Biology. 55: 138-46; author reply. PMID 16507530 DOI: 10.1080/10635150500431155  1
2006 Brandley MC, Wynn A, De Queiroz K. Karyotype and relationships of Anolis desechensis Journal of Herpetology. 40: 136-139. DOI: 10.1670/98-05N.1  1
2005 Brandley MC, Schmitz A, Reeder TW. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Systematic Biology. 54: 373-90. PMID 16012105 DOI: 10.1080/10635150590946808  1
2005 Schmitz A, Brandley MC, Mausfeld P, Vences M, Glaw F, Nussbaum RA, Reeder TW. Opening the black box: phylogenetics and morphological evolution of the Malagasy fossorial lizards of the subfamily "Scincinae". Molecular Phylogenetics and Evolution. 34: 118-33. PMID 15579386 DOI: 10.1016/J.Ympev.2004.08.016  1
2004 Brandley MC, De Queiroz K. Phylogeny, ecomorphological evolution, and historical biogeography of the Anolis cristatellus series Herpetological Monographs. 90-126. DOI: 10.1655/0733-1347(2004)018[0090:Peeahb]2.0.Co;2  1
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