Jonathan J. Fong, Ph.D. - Publications

1996-2001 Department of Integrative Biology University of California, Berkeley, Berkeley, CA, United States 
 2001-2003 Department of Natural Sciences Loma Linda University, Loma Linda, United States 
 2003-2004 Evolutionary Genomics Lab DOE Joint Genome Institute 
 2004-2011 Department of Integrative Biology University of California, Berkeley, Berkeley, CA, United States 
 2011-2015 School of Biological Sciences Seoul National University, Seoul, South Korea 
 2015- Science Unit Lingnan University 
Evolutionary Biology, Molecular Systematics, Herpetology, Conservation Genetics

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Tan DKT, Fong JJ, Zhang C. Re-description of the genus Heterobiantes and its type species H. geniculatus (Opiliones: Laniatores: Epedanidae) with additional genital and external morphology data. Zootaxa. 5353: 533-550. PMID 38220664 DOI: 10.11646/zootaxa.5353.6.2  0.772
2021 Lee C, Fong JJ, Jiang JP, Li PP, Waldman B, Chong JR, Lee H, Min MS. Phylogeographic study of the species complex, with emphasis on Northeast Asia. Animal Cells and Systems. 25: 434-444. PMID 35059143 DOI: 10.1080/19768354.2021.2015438  0.348
2021 Lee H, Wissitrassameewong K, Park MS, Fong JJ, Verbeken A, Kim C, Lim YW. Taxonomic Revision of the Genus (Russulales, Basidiomycota) of South Korea. Mycobiology. 49: 308-345. PMID 34512077 DOI: 10.1080/12298093.2021.1943812  0.65
2020 Park KH, Oh SY, Yoo S, Fong JJ, Kim CS, Jo JW, Lim YW. Influence of Season and Soil Properties on Fungal Communities of Neighboring Climax Forests ( and ). Frontiers in Microbiology. 11: 572706. PMID 33193174 DOI: 10.3389/fmicb.2020.572706  0.518
2020 Park KH, Oh SY, Yoo S, Park MS, Fong JJ, Lim YW. Successional Change of the Fungal Microbiome Pine Seedling Roots Inoculated With . Frontiers in Microbiology. 11: 574146. PMID 33101248 DOI: 10.3389/fmicb.2020.574146  0.561
2020 Gong S, Wu J, Gao Y, Fong JJ, Parham JF, Shi H. Integrating and updating wildlife conservation in China. Current Biology : Cb. 30: R915-R919. PMID 32810445 DOI: 10.1016/J.Cub.2020.06.080  0.769
2020 Borzée A, Fong JJ, Nguyen HQ, Jang Y. Large-Scale Hybridisation as an Extinction Threat to the Suweon Treefrog (Hylidae: ). Animals : An Open Access Journal From Mdpi. 10. PMID 32349428 DOI: 10.3390/Ani10050764  0.499
2020 Kim JS, Park J, Fong JJ, Zhang YP, Li SR, Ota H, Min SH, Min MS, Park D. Genetic diversity and inferred dispersal history of the Schlegel's Japanese Gecko () in Northeast Asia based on population genetic analyses and paleo-species distribution modelling. Mitochondrial Dna. Part a, Dna Mapping, Sequencing, and Analysis. 1-11. PMID 32212876 DOI: 10.1080/24701394.2020.1742332  0.438
2020 Park J, Pavlov IN, Kim M, Park MS, Oh S, Park KH, Fong JJ, Lim YW. Investigating Wood Decaying Fungi Diversity in Central Siberia, Russia Using ITS Sequence Analysis and Interaction with Host Trees Sustainability. 12: 2535. DOI: 10.3390/Su12062535  0.423
2020 Fong JJ, Yang B, Li P, Waldman B, Min M. Phylogenetic Systematics of the Water Toad (Bufo stejnegeri) Elucidates the Evolution of Semi-aquatic Toad Ecology and Pleistocene Glacial Refugia Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00523  0.469
2020 Kim D, Park I, Bae S, Fong JJ, Zhang Y, Li S, Ota H, Kim J, Park D. Prediction of present and future distribution of the Schlegel’s Japanese gecko (Gekko japonicus) using MaxEnt modeling Journal of Ecology and Environment. 44. DOI: 10.1186/S41610-020-0147-Y  0.373
2019 Cho HJ, Lee H, Park MS, Kim C, Wisitrassameewong K, Lupala A, Park KH, Kim MJ, Fong JJ, Lim YW. in Korea: New Records and a New Species. Mycobiology. 47: 368-377. PMID 32010458 DOI: 10.1080/12298093.2019.1663122  0.685
2019 Park MS, Oh SY, Fong JJ, Houbraken J, Lim YW. The diversity and ecological roles of Penicillium in intertidal zones. Scientific Reports. 9: 13540. PMID 31537866 DOI: 10.1038/S41598-019-49966-5  0.633
2019 Fong JJ, Stuart BL, Mccormack TEM, Parham JF. First Genetic Data of the Critically Endangered Vietnamese Pond Turtle (Mauremys annamensis) from Known-locality Specimens Current Herpetology. 38: 140. DOI: 10.5358/Hsj.38.140  0.764
2019 Kim D, Park I, Ota H, Fong JJ, Kim J, Zhang Y, Li S, Choi W, Park D. Patterns of morphological variation in the Schlegel’s Japanese gecko (Gekko japonicus) across populations in China, Japan, and Korea Journal of Ecology and Environment. 43. DOI: 10.1186/S41610-019-0132-5  0.348
2019 Rujirawan A, Fong JJ, Ampai N, Yodthong S, Termprayoon K, Aowphol A. A new karst-dwelling gecko of theGekko petricolusgroup (Reptilia: Gekkonidae) from Phitsanulok Province, central Thailand Journal of Natural History. 53: 557-576. DOI: 10.1080/00222933.2019.1597937  0.428
2019 Lam IPY, Sung Y, Lin L, Fong JJ. Developing quantitative PCR assays to detect threatened and invasive freshwater turtles in Hong Kong using environmental DNA Conservation Genetics Resources. 12: 293-300. DOI: 10.1007/S12686-019-01103-0  0.462
2018 Lin L, Hu Q, Fong JJ, Yang J, Chen Z, Zhou F, Wang J, Xiao F, Shi H. Reproductive ecology of the endangered Beal's-eyed turtle, . Peerj. 6: e4997. PMID 29963334 DOI: 10.7717/Peerj.4997  0.308
2018 Sung Y, Fong JJ. Assessing consumer trends and illegal activity by monitoring the online wildlife trade Biological Conservation. 227: 219-225. DOI: 10.1016/J.Biocon.2018.09.025  0.43
2017 Park J, Kim IH, Fong JJ, Koo KS, Choi WJ, Tsai TS, Park D. Northward dispersal of sea kraits (Laticauda semifasciata) beyond their typical range. Plos One. 12: e0179871. PMID 28644894 DOI: 10.1371/Journal.Pone.0179871  0.388
2017 Lee WD, Fong JJ, Eimes JA, Lim YW. Diversity and abundance of human-pathogenic fungi associated with pigeon feces in urban environments. Molecular Ecology. PMID 28636808 DOI: 10.1111/Mec.14216  0.768
2017 Yang BT, Zhou Y, Min MS, Matsui M, Dong BJ, Li PP, Fong JJ. Diversity and phylogeography of Northeast Asian brown frogs allied to Rana dybowskii (Anura, Ranidae). Molecular Phylogenetics and Evolution. PMID 28476494 DOI: 10.1016/J.Ympev.2017.04.026  0.419
2017 Gong SP, Shi HT, Jiang AW, Fong JJ, Gaillard D, Wang JC. Disappearance of endangered turtles within China's nature reserves. Current Biology : Cb. 27: R170-R171. PMID 28267967 DOI: 10.1016/J.Cub.2017.01.039  0.407
2017 Lin Y, Chen Y, Yi C, Fong JJ, Kim W, Rius M, Zhan A. Genetic signatures of natural selection in a model invasive ascidian. Scientific Reports. 7: 44080. PMID 28266616 DOI: 10.1038/Srep44080  0.363
2017 Fong JJ, Sung Y. Shells in Trouble—Turtle Ecology, Conservation, and the Asian Turtle Crisis Frontiers For Young Minds. 5. DOI: 10.3389/Frym.2017.00068  0.366
2016 Oh SY, Fong JJ, Park MS, Lim YW. Distinctive Feature of Microbial Communities and Bacterial Functional Profiles in Tricholoma matsutake Dominant Soil. Plos One. 11: e0168573. PMID 27977803 DOI: 10.1371/Journal.Pone.0168573  0.532
2015 Cho HJ, Park MS, Lee H, Oh SY, Jang Y, Fong JJ, Lim YW. Four New Species of Amanita in Inje County, Korea. Mycobiology. 43: 408-14. PMID 26839500 DOI: 10.5941/Myco.2015.43.4.408  0.679
2015 Fong JJ, Li PP, Yang BT, Zhou ZY, Leaché AD, Min MS, Waldman B. Influence of geology and human activity on the genetic structure and demography of the Oriental fire-bellied toad (Bombina orientalis). Molecular Phylogenetics and Evolution. PMID 26748269 DOI: 10.1016/J.Ympev.2015.12.019  0.663
2015 Jargalmaa S, Park MS, Park JY, Fong JJ, Jang Y, Lim YW. Taxonomic Study of the Genus Abundisporus in Korea. Mycobiology. 43: 225-30. PMID 26539038 DOI: 10.5941/Myco.2015.43.3.225  0.662
2015 Park MS, Eom JE, Fong JJ, Lim YW. New record and enzyme activity of four species in Penicillium section Citrina from marine environments in Korea. Journal of Microbiology (Seoul, Korea). 53: 219-25. PMID 25845537 DOI: 10.1007/S12275-015-4700-9  0.604
2015 Fong JJ, Cheng TL, Bataille A, Pessier AP, Waldman B, Vredenburg VT. Early 1900 s detection of Batrachochytrium dendrobatidis in Korean amphibians. Plos One. 10: e0115656. PMID 25738656 DOI: 10.1371/Journal.Pone.0115656  0.351
2015 Park MS, Fong JJ, Oh SY, Houbraken J, Sohn JH, Hong SB, Lim YW. Penicillium jejuense sp. nov., isolated from the marine environments of Jeju Island, Korea. Mycologia. 107: 209-16. PMID 25361832 DOI: 10.3852/14-180  0.66
2015 Zhou Y, Yang BT, Li PP, Min MS, Fong JJ, Dong BJ, Zhou ZY, Lu YY. Molecular and Morphological Evidence for Rana kunyuensis as a Junior Synonym of Rana coreana (Anura: Ranidae) Journal of Herpetology. 49: 302-307. DOI: 10.1670/13-111  0.337
2015 Lee H, Park MS, Jung PE, Fong JJ, Oh SY, Verbeken A, Lim YW. Lactarius cucurbitoides (Russulales, Basidiomycota), a new species from South Korea supported by molecular and morphological data Phytotaxa. 205: 168-176. DOI: 10.11646/Phytotaxa.205.3.4  0.425
2014 Min YJ, Park MS, Fong JJ, Seok SJ, Han SK, Lim YW. Molecular Taxonomical Re-classification of the Genus Suillus Micheli ex S. F. Gray in South Korea. Mycobiology. 42: 221-8. PMID 25346598 DOI: 10.5941/Myco.2014.42.3.221  0.608
2014 Lee WD, Lee H, Fong JJ, Oh SY, Park MS, Quan Y, Jung PE, Lim YW. A checklist of the basidiomycetous macrofungi and a record of five new species from mt. Oseo in Korea. Mycobiology. 42: 132-9. PMID 25071381 DOI: 10.5941/Myco.2014.42.2.132  0.791
2014 Park MS, Lee EJ, Fong JJ, Sohn JH, Lim YW. A New Record of Penicillium antarcticum from Marine Environments in Korea. Mycobiology. 42: 109-13. PMID 25071378 DOI: 10.5941/Myco.2014.42.2.109  0.583
2014 Park MS, Oh SY, Cho HJ, Fong JJ, Cheon WJ, Lim YW. Trichoderma songyi sp. nov., a new species associated with the pine mushroom (Tricholoma matsutake). Antonie Van Leeuwenhoek. 106: 593-603. PMID 25052534 DOI: 10.1007/S10482-014-0230-4  0.657
2014 Park MS, Lee H, Oh SY, Jung PE, Seok SJ, Fong JJ, Lim YW. Species delimitation of three species within the Russula subgenus Compacta in Korea: R. eccentrica, R. nigricans, and R. subnigricans. Journal of Microbiology (Seoul, Korea). 52: 631-8. PMID 24994012 DOI: 10.1007/S12275-014-4168-Z  0.58
2014 Jung PE, Fong JJ, Park MS, Oh SY, Kim C, Lim YW. Sequence validation for the identification of the white-rot fungi Bjerkandera in public sequence databases. Journal of Microbiology and Biotechnology. 24: 1301-7. PMID 24912556 DOI: 10.4014/Jmb.1404.04021  0.602
2014 Park MS, Fong JJ, Oh SY, Kwon KK, Sohn JH, Lim YW. Marine-derived Penicillium in Korea: diversity, enzyme activity, and antifungal properties. Antonie Van Leeuwenhoek. 106: 331-45. PMID 24908060 DOI: 10.1007/S10482-014-0205-5  0.596
2014 Oh SY, Fong JJ, Park MS, Chang L, Lim YW. Identifying airborne fungi in Seoul, Korea using metagenomics. Journal of Microbiology (Seoul, Korea). 52: 465-72. PMID 24723107 DOI: 10.1007/S12275-014-3550-1  0.601
2014 Min YJ, Park MS, Fong JJ, Quan Y, Jung S, Lim YW. Diversity and saline resistance of endophytic fungi associated with Pinus thunbergii in coastal shelterbelts of Korea. Journal of Microbiology and Biotechnology. 24: 324-33. PMID 24317482 DOI: 10.4014/Jmb.1310.10041  0.631
2014 Park MS, Fong JJ, Lee H, Shin S, Lee S, Lee N, Lim YW. Determination of coleopteran insects associated with spore dispersal of Cryptoporus volvatus (Polyporaceae: Basidiomycota) in Korea Journal of Asia-Pacific Entomology. 17: 647-651. DOI: 10.1016/J.Aspen.2014.06.005  0.46
2013 Park MS, Fong JJ, Lee H, Oh SY, Jung PE, Min YJ, Seok SJ, Lim YW. Delimitation of russula subgenus amoenula in Korea using three molecular markers. Mycobiology. 41: 191-201. PMID 24493939 DOI: 10.5941/Myco.2013.41.4.191  0.67
2013 Bataille A, Fong JJ, Cha M, Wogan GO, Baek HJ, Lee H, Min MS, Waldman B. Genetic evidence for a high diversity and wide distribution of endemic strains of the pathogenic chytrid fungus Batrachochytrium dendrobatidis in wild Asian amphibians. Molecular Ecology. 22: 4196-209. PMID 23802586 DOI: 10.1111/Mec.12385  0.78
2013 Kim IH, Kim JK, Fong JJ, Park D. Report of a dicephalic Steppes Ratsnake (Elaphe dione) collected in South Korea Asian Herpetological Research. 4: 182-186. DOI: 10.3724/Sp.J.1245.2013.00182  0.321
2012 Fong JJ, Brown JM, Fujita MK, Boussau B. A phylogenomic approach to vertebrate phylogeny supports a turtle-archosaur affinity and a possible paraphyletic lissamphibia. Plos One. 7: e48990. PMID 23145043 DOI: 10.1371/Journal.Pone.0048990  0.649
2011 Fong JJ, Fujita MK. Evaluating phylogenetic informativeness and data-type usage for new protein-coding genes across Vertebrata. Molecular Phylogenetics and Evolution. 61: 300-7. PMID 21742044 DOI: 10.1016/J.Ympev.2011.06.016  0.651
2011 Lin RC, Yeung CKL, Fong JJ, Tzeng HY, Li SH. The Lack of Pollinator Specificity in a Dioecious Fig Tree: Sympatric Fig-pollinating Wasps of Ficus septica in Southern Taiwan Biotropica. 43: 200-207. DOI: 10.1111/J.1744-7429.2010.00686.X  0.479
2010 Fong JJ, Qiao GX. New localities of endangered Chinese turtles from museum specimens and the practical and ethical challenges using and reporting natural history collection data Zootaxa. 59-68. DOI: 10.11646/Zootaxa.2393.1.5  0.436
2010 Fong JJ, Chen TH. DNA evidence for the hybridization of wild turtles in Taiwan: Possible genetic pollution from trade animals Conservation Genetics. 11: 2061-2066. DOI: 10.1007/S10592-010-0066-Z  0.38
2009 Gong SP, Chow AT, Fong JJ, Shi HT. The chelonian trade in the largest pet market in China: scale, scope and impact on turtle conservation Oryx. 43: 213-216. DOI: 10.1017/S0030605308000902  0.364
2008 Shi H, Fong JJ, Parham JF, Pang J, Wang J, Hong M, Zhang YP. Mitochondrial variation of the "eyed" turtles (Sacalia) based on known-locality and trade specimens. Molecular Phylogenetics and Evolution. 49: 1025-9. PMID 18938252 DOI: 10.1016/J.Ympev.2008.10.001  0.727
2008 Meiling H, Haitao S, Lirong F, Shiping G, Fong JJ, Parham JF. Scientific refutation of traditional Chinese medicine claims about turtles Applied Herpetology. 5: 173-187. DOI: 10.1163/157075408784648835  0.738
2008 Lin HC, Li SH, Fong J, Lin SM. Ventral coloration differentiation and mitochondrial sequences of the Chinese Cobra (Naja atra) in Taiwan Conservation Genetics. 9: 1089-1097. DOI: 10.1007/S10592-007-9418-8  0.345
2007 Fong JJ, Parham JF, Shi H, Stuart BL, Carter RL. A genetic survey of heavily exploited, endangered turtles: Caveats on the conservation value of trade animals Animal Conservation. 10: 452-460. DOI: 10.1111/J.1469-1795.2007.00131.X  0.771
2005 Macey JR, Fong JJ, Kuehl JV, Shafiei S, Ananjeva NB, Papenfuss TJ, Boore JL. The complete mitochondrial genome of a gecko and the phylogenetic position of the Middle Eastern Teratoscincus keyserlingii. Molecular Phylogenetics and Evolution. 36: 188-93. PMID 15904865 DOI: 10.1016/J.Ympev.2005.03.025  0.62
2002 Fong JJ, Parham JF, Fu J. A Reassessment of the Distribution of Cuora flavomarginata Gray 1863 on Mainland China Russian Journal of Herpetology. 9: 8-14. DOI: 10.30906/1026-2296-2002-9-1-8-14  0.744
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