Adam Leaché, Ph.D. - Publications

Affiliations: 
Biology University of Washington, Seattle, Seattle, WA 

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Davis HR, Des Roches S, Anderson RA, Leaché AD. Population expansion, divergence, and persistence in Western Fence Lizards (Sceloporus occidentalis) at the northern extreme of their distributional range. Scientific Reports. 12: 6310. PMID 35428834 DOI: 10.1038/s41598-022-10233-9  0.313
2022 Amador L, Leaché AD, Victoriano PF, Hickerson MJ, D'Elía G. Genomic scale data shows that Parastacus nicoleti encompasses more than one species of burrowing continental crayfishes and that lineage divergence occurred with and without gene flow. Molecular Phylogenetics and Evolution. 107443. PMID 35189366 DOI: 10.1016/j.ympev.2022.107443  0.491
2021 Finger N, Farleigh K, Bracken JT, Leaché AD, François O, Yang Z, Flouri T, Charran T, Jezkova T, Williams DA, Blair C. Genome-scale data reveal deep lineage divergence and a complex demographic history in the Texas horned lizard (Phrynosoma cornutum) throughout the southwestern and central US. Genome Biology and Evolution. PMID 34849831 DOI: 10.1093/gbe/evab260  0.383
2021 Jaynes KE, Myers EA, Gvoždík V, Blackburn DC, Portik DM, Greenbaum E, Jongsma GFM, Rödel MO, Badjedjea G, Bamba-Kaya A, Baptista NL, Akuboy JB, Ernst R, Kouete MT, Kusamba C, et al. Giant Tree Frog diversification in West and Central Africa: isolation by physical barriers, climate, and reproductive traits. Molecular Ecology. PMID 34516675 DOI: 10.1111/mec.16169  0.785
2021 Bedoya AM, Leaché AD, Olmstead RG. Andean uplift, drainage basin formation, and the evolution of plants living in fast-flowing aquatic ecosystems in northern South America. The New Phytologist. PMID 34318482 DOI: 10.1111/nph.17649  0.365
2021 Esquerré D, Keogh JS, Demangel D, Morando M, Avila LJ, Sites JW, Ferri-Yáñez F, Leaché AD. Rapid radiation and rampant reticulation: Phylogenomics of South American Liolaemus lizards. Systematic Biology. PMID 34259868 DOI: 10.1093/sysbio/syab058  0.426
2021 Bouzid NM, Archie JW, Anderson RA, Grummer JA, Leaché AD. Evidence for ephemeral ring species formation during the diversification history of Western Fence Lizards (Sceloporus occidentalis). Molecular Ecology. PMID 33565164 DOI: 10.1111/mec.15836  0.383
2020 Magee AF, Höhna S, Vasylyeva TI, Leaché AD, Minin VN. Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts. Plos Computational Biology. 16: e1007999. PMID 33112848 DOI: 10.1371/journal.pcbi.1007999  0.701
2020 Thanou E, Kornilios P, Lymberakis P, Leaché AD. Genomic and mitochondrial evidence of ancient isolations and extreme introgression in the four-lined snake. Current Zoology. 66: 99-111. PMID 32467710 DOI: 10.1093/cz/zoz018  0.342
2020 Morando M, Olave M, Avila LJ, Sites JW, Leaché AD. Phylogenomic data resolve higher-level relationships within South American Liolaemus lizards. Molecular Phylogenetics and Evolution. 106781. PMID 32147573 DOI: 10.1016/j.ympev.2020.106781  0.387
2020 Leaché AD, Oaks JR, Ofori-Boateng C, Fujita MK. Comparative phylogeography of West African amphibians and reptiles. Evolution; International Journal of Organic Evolution. PMID 32067219 DOI: 10.1111/Evo.13941  0.762
2019 Esquerré D, Ramírez-Álvarez D, Pavón-Vázquez CJ, Troncoso-Palacios J, Garín CF, Scott Keogh J, Leaché AD. Speciation across mountains: phylogenomics, species delimitation and taxonomy of the Liolaemus leopardinus clade (Squamata, Liolaemidae). Molecular Phylogenetics and Evolution. 106524. PMID 31170522 DOI: 10.1016/j.ympev.2019.106524  0.484
2019 Portik DM, Bell RC, Blackburn DC, Bauer AM, Barratt CD, Branch WR, Burger M, Channing A, Colston TJ, Conradie W, Dehling JM, Drewes RC, Ernst R, Greenbaum E, Gvoždík V, et al. Sexual Dichromatism Drives Diversification within a Major Radiation of African Amphibians. Systematic Biology. PMID 31140573 DOI: 10.1093/Sysbio/Syz023  0.687
2019 Villamil J, Avila LJ, Morando M, Sites JW, Leaché AD, Maneyro R, Camargo A. Coalescent-based species delimitation in the sand lizards of the Liolaemus wiegmannii complex (Squamata: Liolaemidae). Molecular Phylogenetics and Evolution. PMID 31128241 DOI: 10.1016/J.Ympev.2019.05.024  0.405
2019 Leaché AD, Portik DM, Rivera D, Rödel M, Penner J, Gvoždík V, Greenbaum E, Jongsma GFM, Ofori‐Boateng C, Burger M, Eniang EA, Bell RC, Fujita MK. Exploring rain forest diversification using demographic model testing in the African foam‐nest treefrog Chiromantis rufescens Journal of Biogeography. 46: 2706-2721. DOI: 10.1111/Jbi.13716  0.749
2019 Krishnan S, Ofori-Boateng C, Fujita MK, Leaché AD. Geographic variation in West African Agama picticauda: insights from genetics, morphology and ecology African Journal of Herpetology. 68: 33-49. DOI: 10.1080/21564574.2018.1509139  0.708
2018 Leaché AD, Zhu T, Rannala B, Yang Z. The Spectre of Too Many Species. Systematic Biology. PMID 29982825 DOI: 10.1093/Sysbio/Syy051  0.458
2018 Leaché AD, McElroy MT, Trinh A. A genomic evaluation of taxonomic trends through time in coast horned lizards (genus Phrynosoma). Molecular Ecology. PMID 29742301 DOI: 10.1111/mec.14715  0.511
2018 Ofori-Boateng C, LeachÉ AD, Obeng-Kankam B, KouamÉ NG, Hillers A, RÖdel MO. A new species of Puddle Frog, genus Phrynobatrachus (Amphibia: Anura: Phrynobatrachidae) from Ghana. Zootaxa. 4374: 565-578. PMID 29689792  0.506
2018 Psonis N, Antoniou A, Karameta E, Leaché AD, Kotsakiozi P, Darriba D, Kozlov A, Stamatakis A, Poursanidis D, Kukushkin O, Jablonski D, Crnobrnja-Isailović J, Gherghel I, Lymberakis P, Poulakakis N. Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system. Molecular Phylogenetics and Evolution. PMID 29574273 DOI: 10.1016/J.Ympev.2018.03.021  0.524
2018 Grummer JA, Morando MM, Avila LJ, Sites JW, Leaché AD. Phylogenomic evidence for a recent and rapid radiation of lizards in the Patagonian Liolaemus fitzingerii species group. Molecular Phylogenetics and Evolution. PMID 29555296 DOI: 10.1016/j.ympev.2018.03.023  0.306
2018 Charles KL, Bell RC, Blackburn DC, Burger M, Fujita MK, Gvoždík V, Jongsma GF, Kouete MT, Leaché AD, Portik DM. Sky, sea, and forest islands: Diversification in the African leaf-folding frog Afrixalus paradorsalis (Anura: Hyperoliidae) of the Lower Guineo-Congolian rain forest Journal of Biogeography. 45: 1781-1794. DOI: 10.1111/Jbi.13365  0.661
2018 Caviedes-Solis IW, Leaché AD. Leapfrogging the Mexican highlands: influence of biogeographical and ecological factors on the diversification of highland species Biological Journal of the Linnean Society. 123: 767-781. DOI: 10.1093/biolinnean/bly002  0.784
2017 Jongsma GFM, Barej MF, Barratt CD, Burger M, Conradie W, Ernst R, Greenbaum E, Hirschfeld M, Leaché AD, Penner J, Portik DM, Zassi-Boulou AG, Rödel MO, Blackburn DC. Diversity and biogeography of frogs in the genus Amnirana (Anura: Ranidae) across sub-Saharan Africa. Molecular Phylogenetics and Evolution. PMID 29246817 DOI: 10.1016/J.Ympev.2017.12.006  0.79
2017 Harris RB, Alström P, Ödeen A, Leaché AD. Discordance between genomic divergence and phenotypic variation in a rapidly evolving avian genus (Motacilla). Molecular Phylogenetics and Evolution. PMID 29246816 DOI: 10.1016/j.ympev.2017.11.020  0.499
2017 Panzera A, Leaché AD, D'Elía G, Victoriano PF. Phylogenomic analysis of the Chilean clade of Liolaemus lizards (Squamata: Liolaemidae) based on sequence capture data. Peerj. 5: e3941. PMID 29085750 DOI: 10.7717/peerj.3941  0.369
2017 Portik DM, Leaché AD, Rivera D, Barej MF, Burger M, Hirschfeld M, Rödel MO, Blackburn DC, Fujita MK. Evaluating mechanisms of diversification in a Guineo-Congolian tropical forest frog using demographic model selection. Molecular Ecology. PMID 28748565 DOI: 10.1111/Mec.14266  0.784
2017 Richmond JQ, Wood DA, Westphal MF, Vandergast AG, Leaché AD, Saslaw LR, Butterfield HS, Fisher RN. Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert. Molecular Ecology. PMID 28370723 DOI: 10.1111/Mec.14125  0.427
2016 de Oca AN, Barley AJ, Meza-Lázaro RN, García-Vázquez UO, Zamora-Abrego JG, Thomson RC, Leaché AD. Corrigendum to "Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity" [Mol. Phylogen. Evol. 106 (2017) 241-253]. Molecular Phylogenetics and Evolution. PMID 27816561 DOI: 10.1016/J.Ympev.2016.11.002  0.417
2016 de Oca AN, Barley AJ, Meza-Lázaro RN, García-Vázquez UO, Zamora-Abrego JG, Thomson RC, Leaché AD. Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity. Molecular Phylogenetics and Evolution. PMID 27720785 DOI: 10.1016/J.Ympev.2016.09.001  0.371
2016 Levy H, Clucas GV, Rogers AD, Leaché AD, Ciborowski KL, Polito MJ, Lynch HJ, Dunn MJ, Hart T. Population structure and phylogeography of the Gentoo Penguin (Pygoscelis papua) across the Scotia Arc. Ecology and Evolution. PMID 26933489 DOI: 10.1002/Ece3.1929  0.342
2016 Linkem CW, Minin VN, Leaché AD. Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae). Systematic Biology. PMID 26738927 DOI: 10.1093/Sysbio/Syw001  0.509
2016 Leaché AD, Grummer JA, Miller M, Krishnan S, Fujita MK, Böhme W, Schmitz A, Lebreton M, Ineich I, Chirio L, Ofori-boateng C, Eniang EA, Greenbaum E, Rödel M, Wagner P. Bayesian inference of species diffusion in the West AfricanAgama agamaspecies group (Reptilia, Agamidae) Systematics and Biodiversity. 15: 192-203. DOI: 10.1080/14772000.2016.1238018  0.732
2015 Fong JJ, Li PP, Yang BT, Zhou ZY, Leaché AD, Min MS, Waldman B. Influence of geology and human activity on the genetic structure and demography of the Oriental fire-bellied toad (Bombina orientalis). Molecular Phylogenetics and Evolution. PMID 26748269 DOI: 10.1016/J.Ympev.2015.12.019  0.571
2015 Grummer JA, Calderón-Espinosa ML, Nieto-Montes de Oca A, Smith EN, Méndez-de la Cruz FR, Leaché AD. Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands. Molecular Ecology. 24: 1523-42. PMID 25712551 DOI: 10.1111/Mec.13122  0.315
2015 Leaché AD, Chavez AS, Jones LN, Grummer JA, Gottscho AD, Linkem CW. Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing. Genome Biology and Evolution. 7: 706-19. PMID 25663487 DOI: 10.1093/Gbe/Evv026  0.336
2015 Leaché AD, Linkem CW. Phylogenomics of Horned Lizards (Genus: Phrynosoma) Using Targeted Sequence Capture Data Copeia. 103: 586-594. DOI: 10.1643/Ch-15-248  0.321
2015 Caviedes-Solis IW, Bouzid NM, Banbury BL, Leaché AD. Uprooting phylogenetic uncertainty in coalescent species delimitation: A meta-analysis of empirical studies Current Zoology. 61: 866-873.  0.785
2014 Leaché AD, Wagner P, Linkem CW, Böhme W, Papenfuss TJ, Chong RA, Lavin BR, Bauer AM, Nielsen SV, Greenbaum E, Rödel MO, Schmitz A, LeBreton M, Ineich I, Chirio L, et al. A hybrid phylogenetic-phylogenomic approach for species tree estimation in African Agama lizards with applications to biogeography, character evolution, and diversification. Molecular Phylogenetics and Evolution. 79: 215-30. PMID 24973715 DOI: 10.1016/J.Ympev.2014.06.013  0.749
2014 Leaché AD, Fujita MK, Minin VN, Bouckaert RR. Species delimitation using genome-wide SNP data. Systematic Biology. 63: 534-42. PMID 24627183 DOI: 10.1093/Sysbio/Syu018  0.74
2014 Leaché AD, Harris RB, Rannala B, Yang Z. The influence of gene flow on species tree estimation: a simulation study. Systematic Biology. 63: 17-30. PMID 23945075 DOI: 10.1093/Sysbio/Syt049  0.474
2014 De Oca ANM, Arenas-Moreno D, Beltrán-Sánchez E, Leaché AD. A new species of horned lizard (genus phrynosoma) from guerrero, México, with an updated multilocus phylogeny Herpetologica. 70: 241-257. DOI: 10.1655/HERPETOLOGICA-D-13-00077  0.436
2014 Wagner P, Leaché A, Mazuch T, Böhme W. Additions to the lizard diversity of the Horn of Africa: Two new species in the Agama spinosa group Amphibia Reptilia. 34: 363-387. DOI: 10.1163/15685381-00002897  0.575
2014 Wagner P, Leaché AD, Fujita MK. Description of four new West African forest geckos of the Hemidactylus fasciatus Gray, 1842 complex, revealed by coalescent species delimitation Bonn Zoological Bulletin. 63: 1-14.  0.723
2013 Leaché AD, Harris RB, Maliska ME, Linkem CW. Comparative species divergence across eight triplets of spiny lizards (Sceloporus) using genomic sequence data. Genome Biology and Evolution. 5: 2410-9. PMID 24259316 DOI: 10.1093/Gbe/Evt186  0.396
2012 Rödel MO, Barej MF, Hillers A, Leaché AD, Kouamé NG, Ofori-Boateng C, Assemian NE, Tohé B, Penner J, Hirschfeld M, Doumbia J, Gonwouo LN, Nopper J, Brede C, Diaz R, et al. The genus Astylosternus in the Upper Guinea rainforests, west africa, with the description of a new species (amphibia: Anura: Arthroleptidae) Zootaxa. 1-29. DOI: 10.5281/Zenodo.280508  0.731
2011 Leaché AD, Rannala B. The accuracy of species tree estimation under simulation: a comparison of methods. Systematic Biology. 60: 126-37. PMID 21088009 DOI: 10.1093/Sysbio/Syq073  0.456
2011 Fujita MK, Leaché AD. A coalescent perspective on delimiting and naming species: A reply to Bauer et al. Proceedings of the Royal Society B: Biological Sciences. 278: 493-495. DOI: 10.1098/Rspb.2010.1864  0.697
2010 Leaché AD, Fujita MK. Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus). Proceedings. Biological Sciences / the Royal Society. 277: 3071-7. PMID 20519219 DOI: 10.1098/Rspb.2010.0662  0.76
2010 Leaché AD. Species trees for spiny lizards (genus Sceloporus): identifying points of concordance and conflict between nuclear and mitochondrial data. Molecular Phylogenetics and Evolution. 54: 162-71. PMID 19751840 DOI: 10.1016/j.ympev.2009.09.006  0.483
2010 Blackburn DC, Gvožídk V, Leaché AD. A new squeaker frog (Arthroleptidae: Arthroleptis) from the Mountains of Cameroon and Nigeria Herpetologica. 66: 335-348. DOI: 10.1655/Herpetologica-D-10-00015.1  0.473
2009 Leaché AD. Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus). Systematic Biology. 58: 547-59. PMID 20525608 DOI: 10.1093/sysbio/syp057  0.535
2009 Leaché AD, Sites JW. Chromosome evolution and diversification in North American spiny lizards (genus Sceloporus). Cytogenetic and Genome Research. 127: 166-81. PMID 20203475 DOI: 10.1159/000293285  0.331
2007 Leaché AD, Mulcahy DG. Phylogeny, divergence times and species limits of spiny lizards (Sceloporus magister species group) in western North American deserts and Baja California. Molecular Ecology. 16: 5216-33. PMID 17944851 DOI: 10.1111/J.1365-294X.2007.03556.X  0.433
2007 Leaché AD, Crews SC, Hickerson MJ. Two waves of diversification in mammals and reptiles of Baja California revealed by hierarchical Bayesian analysis. Biology Letters. 3: 646-50. PMID 17698443 DOI: 10.1098/Rsbl.2007.0368  0.418
2007 Leaché AD, Cole CJ. Hybridization between multiple fence lizard lineages in an ecotone: locally discordant variation in mitochondrial DNA, chromosomes, and morphology. Molecular Ecology. 16: 1035-54. PMID 17305859 DOI: 10.1111/j.1365-294X.2006.03194.x  0.336
2006 Brandley MC, Leaché AD, Warren DL, McGuire JA. Are unequal clade priors problematic for Bayesian phylogenetics? Systematic Biology. 55: 138-46; author reply. PMID 16507530 DOI: 10.1080/10635150500431155  0.699
2006 Leaché AD, McGuire JA. Phylogenetic relationships of horned lizards (Phrynosoma) based on nuclear and mitochondrial data: evidence for a misleading mitochondrial gene tree. Molecular Phylogenetics and Evolution. 39: 628-44. PMID 16488160 DOI: 10.1016/J.Ympev.2005.12.016  0.55
2004 Niewiarowski PH, Angilletta MJ, Leaché AD. Phylogenetic comparative analysis of life-history variation among populations of the lizard Sceloporus undulatus: an example and prognosis. Evolution; International Journal of Organic Evolution. 58: 619-33. PMID 15119445  0.374
2002 Leaché AD, Reeder TW. Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of Parsimony, Likelihood, and Bayesian approaches. Systematic Biology. 51: 44-68. PMID 11943092 DOI: 10.1080/106351502753475871  0.364
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