| Year |
Citation |
Score |
| 2024 |
Miao Z, Ren Y, Tarabini A, Yang L, Li H, Ye C, Liti G, Fischer G, Li J, Yue JX. ScRAPdb: an integrated pan-omics database for the Saccharomyces cerevisiae reference assembly panel. Nucleic Acids Research. PMID 39470715 DOI: 10.1093/nar/gkae955 |
0.462 |
|
| 2024 |
Peña TA, Villarreal P, Agier N, De Chiara M, Barría T, Urbina K, Villarroel CA, Santos ARO, Rosa CA, Nespolo RF, Liti G, Fischer G, Cubillos FA. An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia. Plos Genetics. 20: e1011396. PMID 39241096 DOI: 10.1371/journal.pgen.1011396 |
0.329 |
|
| 2023 |
Villarreal P, O'Donnell S, Agier N, Muñoz-Guzman F, Benavides-Parra J, Urbina K, Peña TA, Solomon M, Nespolo RF, Fischer G, Varela C, Cubillos FA. Domestication signatures in the non-conventional yeast . Msystems. e0105823. PMID 38085042 DOI: 10.1128/msystems.01058-23 |
0.327 |
|
| 2023 |
Chaux F, Agier N, Garrido C, Fischer G, Eberhard S, Xu Z. Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in . Genome Research. PMID 37580131 DOI: 10.1101/gr.278043.123 |
0.593 |
|
| 2023 |
O'Donnell S, Yue JX, Saada OA, Agier N, Caradec C, Cokelaer T, De Chiara M, Delmas S, Dutreux F, Fournier T, Friedrich A, Kornobis E, Li J, Miao Z, Tattini L, ... ... Fischer G, et al. Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae. Nature Genetics. PMID 37524789 DOI: 10.1038/s41588-023-01459-y |
0.762 |
|
| 2021 |
Droghetti R, Agier N, Fischer G, Gherardi M, Cosentino Lagomarsino M. An evolutionary model identifies the main evolutionary biases for the evolution of genome-replication profiles. Elife. 10. PMID 34013887 DOI: 10.7554/eLife.63542 |
0.37 |
|
| 2021 |
Agier N, Fleiss A, Delmas S, Fischer G. A Versatile Protocol to Generate Translocations in Yeast Genomes Using CRISPR/Cas9. Methods in Molecular Biology (Clifton, N.J.). 2196: 181-198. PMID 32889721 DOI: 10.1007/978-1-0716-0868-5_14 |
0.593 |
|
| 2020 |
Fischer G, Liti G, Llorente B. The Budding Yeast Life Cycle: more complex than anticipated? Yeast (Chichester, England). PMID 33197073 DOI: 10.1002/yea.3533 |
0.332 |
|
| 2020 |
O'Donnell S, Chaux F, Fischer G. Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690. Microbiology Resource Announcements. 9. PMID 32912911 DOI: 10.1128/MRA.00726-20 |
0.49 |
|
| 2020 |
Drillon G, Champeimont R, Oteri F, Fischer G, Carbone A. Phylogenetic reconstruction based on synteny block and gene adjacencies. Molecular Biology and Evolution. PMID 32384156 DOI: 10.1093/Molbev/Msaa114 |
0.581 |
|
| 2020 |
Mardones W, Villarroel CA, Krogerus K, Tapia SM, Urbina K, Oporto CI, O'Donnell S, Minebois R, Nespolo R, Fischer G, Querol A, Gibson B, Cubillos FA. Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates. Microbial Biotechnology. PMID 32096913 DOI: 10.1111/1751-7915.13545 |
0.365 |
|
| 2020 |
O'Donnell S, Fischer G. MUM&Co: Accurate detection of all SV types through whole genome alignment. Bioinformatics (Oxford, England). PMID 32096823 DOI: 10.1093/Bioinformatics/Btaa115 |
0.547 |
|
| 2019 |
Fleiss A, O'Donnell S, Fournier T, Lu W, Agier N, Delmas S, Schacherer J, Fischer G. Reshuffling yeast chromosomes with CRISPR/Cas9. Plos Genetics. 15: e1008332. PMID 31465441 DOI: 10.1371/Journal.Pgen.1008332 |
0.713 |
|
| 2019 |
Fairhead C, Fischer G, Liti G, Neuvéglise C, Schacherer J. André Goffeau's imprinting on second generation yeast "genomologists*".* André enjoyed neologisms and used this one frequently. Yeast (Chichester, England). PMID 30645763 DOI: 10.1002/Yea.3377 |
0.735 |
|
| 2018 |
Muller H, Scolari VF, Agier N, Piazza A, Thierry A, Mercy G, Descorps-Declere S, Lazar-Stefanita L, Espeli O, Llorente B, Fischer G, Mozziconacci J, Koszul R. Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C. Molecular Systems Biology. 14: e8293. PMID 30012718 DOI: 10.15252/Msb.20188293 |
0.532 |
|
| 2018 |
Agier N, Delmas S, Zhang Q, Fleiss A, Jaszczyszyn Y, van Dijk E, Thermes C, Weigt M, Cosentino-Lagomarsino M, Fischer G. The evolution of the temporal program of genome replication. Nature Communications. 9: 2199. PMID 29875360 DOI: 10.1038/S41467-018-04628-4 |
0.53 |
|
| 2017 |
Vakirlis NN, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I. A molecular portrait of de novo genes in yeasts. Molecular Biology and Evolution. PMID 29220506 DOI: 10.1093/Molbev/Msx315 |
0.437 |
|
| 2017 |
Yue JX, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergström A, Coupland P, Warringer J, Lagomarsino MC, Fischer G, Durbin R, Liti G. Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Nature Genetics. PMID 28416820 DOI: 10.1038/Ng.3847 |
0.65 |
|
| 2016 |
Sigwalt A, Caradec C, Brion C, Hou J, de Montigny J, Jung P, Fischer G, Llorente B, Friedrich A, Schacherer J. Dissection of quantitative traits by bulk segregant mapping in a protoploid yeast species. Fems Yeast Research. PMID 27371856 DOI: 10.1093/Femsyr/Fow056 |
0.626 |
|
| 2016 |
Fischer G. Forty years of yeast genome exploration by Bernard Dujon. Yeast (Chichester, England). 33: 205-7. PMID 27250574 DOI: 10.1002/Yea.3174 |
0.532 |
|
| 2016 |
Vakirlis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel JP, Blanpain L, Carbone A, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, ... ... Fischer G, et al. Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus. Genome Research. PMID 27247244 DOI: 10.1101/Gr.204420.116 |
0.751 |
|
| 2016 |
Agier N, Fischer G. A Versatile Procedure to Generate Genome-Wide Spatiotemporal Program of Replication in Yeast Species. Methods in Molecular Biology (Clifton, N.J.). 1361: 247-64. PMID 26483026 DOI: 10.1007/978-1-4939-3079-1_14 |
0.507 |
|
| 2015 |
Gillet-Markowska A, Richard H, Fischer G, Lafontaine I. Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries. Bioinformatics (Oxford, England). 31: 801-8. PMID 25380961 DOI: 10.1093/Bioinformatics/Btu730 |
0.45 |
|
| 2015 |
Friedrich A, Jung P, Reisser C, Fischer G, Schacherer J. Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast. Molecular Biology and Evolution. 32: 184-92. PMID 25349286 DOI: 10.1093/Molbev/Msu295 |
0.771 |
|
| 2014 |
Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R. Filling annotation gaps in yeast genomes using genome-wide contact maps. Bioinformatics (Oxford, England). 30: 2105-13. PMID 24711652 DOI: 10.1093/Bioinformatics/Btu162 |
0.611 |
|
| 2014 |
Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, ... ... Fischer G, et al. Total synthesis of a functional designer eukaryotic chromosome. Science (New York, N.Y.). 344: 55-8. PMID 24674868 DOI: 10.1126/Science.1249252 |
0.572 |
|
| 2014 |
Drillon G, Carbone A, Fischer G. SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes. Plos One. 9: e92621. PMID 24651407 DOI: 10.1371/Journal.Pone.0092621 |
0.565 |
|
| 2014 |
Louvel H, Gillet-Markowska A, Liti G, Fischer G. A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes. Yeast (Chichester, England). 31: 91-101. PMID 24288298 DOI: 10.1002/Yea.2991 |
0.448 |
|
| 2014 |
Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, ... ... Fischer G, et al. Total synthesis of a functional designer eukaryotic chromosome (Science (2014) 344, 6179 (55-58)) Science. 344. DOI: 10.1126/Science.1254596 |
0.376 |
|
| 2013 |
Agier N, Romano OM, Touzain F, Cosentino Lagomarsino M, Fischer G. The spatiotemporal program of replication in the genome of Lachancea kluyveri. Genome Biology and Evolution. 5: 370-88. PMID 23355306 DOI: 10.1093/Gbe/Evt014 |
0.602 |
|
| 2012 |
Agier N, Fischer G. The mutational profile of the yeast genome is shaped by replication. Molecular Biology and Evolution. 29: 905-13. PMID 22114361 DOI: 10.1093/Molbev/Msr280 |
0.466 |
|
| 2011 |
Drillon G, Fischer G. Comparative study on synteny between yeasts and vertebrates. Comptes Rendus Biologies. 334: 629-38. PMID 21819944 DOI: 10.1016/J.Crvi.2011.05.011 |
0.568 |
|
| 2011 |
Drillon G, Carbone A, Fischer G. Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs Journal of Logic and Computation. 23: 815-838. DOI: 10.1093/Logcom/Exr047 |
0.452 |
|
| 2009 |
Fischer G, Thompson D, Wortman JR, Fairhead C. Unraveling the genomic diversity of small eukaryotes. Genome Biology. 10: 318. PMID 20003475 DOI: 10.1186/Gb-2009-10-12-318 |
0.585 |
|
| 2009 |
Payen C, Fischer G, Marck C, Proux C, Sherman DJ, Coppée JY, Johnston M, Dujon B, Neuvéglise C. Unusual composition of a yeast chromosome arm is associated with its delayed replication. Genome Research. 19: 1710-21. PMID 19592681 DOI: 10.1101/Gr.090605.108 |
0.701 |
|
| 2009 |
Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, ... ... Fischer G, et al. Comparative genomics of protoploid Saccharomycetaceae. Genome Research. 19: 1696-709. PMID 19525356 DOI: 10.1101/Gr.091546.109 |
0.747 |
|
| 2009 |
Koszul R, Fischer G. A prominent role for segmental duplications in modeling eukaryotic genomes. Comptes Rendus Biologies. 332: 254-66. PMID 19281956 DOI: 10.1016/J.Crvi.2008.07.005 |
0.62 |
|
| 2008 |
Payen C, Koszul R, Dujon B, Fischer G. Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms. Plos Genetics. 4: e1000175. PMID 18773114 DOI: 10.1371/Journal.Pgen.1000175 |
0.675 |
|
| 2006 |
Fischer G, Rocha EP, Brunet F, Vergassola M, Dujon B. Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. Plos Genetics. 2: e32. PMID 16532063 DOI: 10.1371/Journal.Pgen.0020032 |
0.753 |
|
| 2006 |
Koszul R, Dujon B, Fischer G. Stability of large segmental duplications in the yeast genome. Genetics. 172: 2211-22. PMID 16489235 DOI: 10.1534/Genetics.105.048058 |
0.7 |
|
| 2004 |
Boyer J, Badis G, Fairhead C, Talla E, Hantraye F, Fabre E, Fischer G, Hennequin C, Koszul R, Lafontaine I, Ozier-Kalogeropoulos O, Ricchetti M, Richard GF, Thierry A, Dujon B. Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae. Genome Biology. 5: R72. PMID 15345056 DOI: 10.1186/Gb-2004-5-9-R72 |
0.692 |
|
| 2004 |
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, et al. Genome evolution in yeasts. Nature. 430: 35-44. PMID 15229592 DOI: 10.1038/Nature02579 |
0.759 |
|
| 2004 |
Lafontaine I, Fischer G, Talla E, Dujon B. Gene relics in the genome of the yeast Saccharomyces cerevisiae. Gene. 335: 1-17. PMID 15194185 DOI: 10.1016/J.Gene.2004.03.028 |
0.736 |
|
| 2004 |
Koszul R, Caburet S, Dujon B, Fischer G. Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments. The Embo Journal. 23: 234-43. PMID 14685272 DOI: 10.1038/Sj.Emboj.7600024 |
0.734 |
|
| 2003 |
Wenner T, Roth V, Fischer G, Fourrier C, Aigle B, Decaris B, Leblond P. End-to-end fusion of linear deleted chromosomes initiates a cycle of genome instability in Streptomyces ambofaciens. Molecular Microbiology. 50: 411-25. PMID 14617168 DOI: 10.1046/J.1365-2958.2003.03698.X |
0.502 |
|
| 2001 |
Fischer G, Neuvéglise C, Durrens P, Gaillardin C, Dujon B. Evolution of gene order in the genomes of two related yeast species. Genome Research. 11: 2009-19. PMID 11731490 DOI: 10.1101/Gr.212701 |
0.723 |
|
| 2000 |
Fischer G, James SA, Roberts IN, Oliver SG, Louis EJ. Chromosomal evolution in Saccharomyces Nature. 405: 451-454. PMID 10839539 DOI: 10.1038/35013058 |
0.594 |
|
| 1999 |
Martin P, Dary A, André A, Fischer G, Leblond P, Decaris B. Intraclonal polymorphism in the bacterium Streptomyces ambofaciens ATCC23877: evidence for a high degree of heterogeneity of the wild type clones. Mutation Research. 430: 75-85. PMID 10592319 DOI: 10.1016/S0027-5107(99)00149-9 |
0.388 |
|
| 1998 |
Fischer G, Wenner T, Decaris B, Leblond P. Chromosomal arm replacement generates a high level of intraspecific polymorphism in the terminal inverted repeats of the linear chromosomal DNA of Streptomyces ambofaciens. Proceedings of the National Academy of Sciences of the United States of America. 95: 14296-301. PMID 9826694 DOI: 10.1073/Pnas.95.24.14296 |
0.544 |
|
| 1998 |
Fischer G, Holl AC, Volff JN, Vandewiele D, Decaris B, Leblond P. Replication of the linear chromosomal DNA from the centrally located oriC of Streptomyces ambofaciens revealed by PFGE gene dosage analysis. Research in Microbiology. 149: 203-10. PMID 9766222 DOI: 10.1016/S0923-2508(98)80080-6 |
0.473 |
|
| 1998 |
Fischer G, Kyriacou A, Decaris B, Leblond P. Genetic instability and its possible evolutionary implications on the chromosomal structure of Streptomyces. Biochimie. 79: 555-8. PMID 9466692 DOI: 10.1016/S0300-9084(97)82003-2 |
0.497 |
|
| 1997 |
Fischer G, Decaris B, Leblond P. Occurrence of deletions, associated with genetic instability in Streptomyces ambofaciens, is independent of the linearity of the chromosomal DNA. Journal of Bacteriology. 179: 4553-8. PMID 9226265 DOI: 10.1128/Jb.179.14.4553-4558.1997 |
0.511 |
|
| 1996 |
Berger F, Fischer G, Kyriacou A, Decaris B, Leblond P. Mapping of the ribosomal operons on the linear chromosomal DNA of Streptomyces ambofaciens DSM40697. Fems Microbiology Letters. 143: 167-73. PMID 8837469 DOI: 10.1111/J.1574-6968.1996.Tb08476.X |
0.425 |
|
| 1996 |
Leblond P, Fischer G, Francou FX, Berger F, Guérineau M, Decaris B. The unstable region of Streptomyces ambofaciens includes 210 kb terminal inverted repeats flanking the extremities of the linear chromosomal DNA. Molecular Microbiology. 19: 261-71. PMID 8825772 DOI: 10.1046/J.1365-2958.1996.366894.X |
0.47 |
|
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