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James F. Parham, Ph. D. - Publications

Geological Sciences California State University, Fullerton, Fullerton, CA, United States 
Vertebrate Paleontology, Herpetology

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Gentry AD, Kiernan CR, Parham JF. A large non-marine turtle from the Upper Cretaceous of Alabama and a review of North American "Macrobaenids". Anatomical Record (Hoboken, N.J. : 2007). 306: 1411-1430. PMID 37158131 DOI: 10.1002/ar.25054  0.417
2020 Gong S, Wu J, Gao Y, Fong JJ, Parham JF, Shi H. Integrating and updating wildlife conservation in China. Current Biology : Cb. 30: R915-R919. PMID 32810445 DOI: 10.1016/J.Cub.2020.06.080  0.722
2020 Simison WB, Parham JF, Papenfuss TJ, Lam AW, Henderson JB. An Annotated Chromosome-Level Reference Genome of the Red-Eared Slider Turtle (Trachemys scripta elegans). Genome Biology and Evolution. PMID 32227195 DOI: 10.1093/Gbe/Evaa063  0.759
2019 Parham JF, Papenfuss TJ, Sellas AB, Stuart BL, Brian Simison W. Genetic variation and admixture of red-eared sliders (Trachemys scripta elegans) in the USA. Molecular Phylogenetics and Evolution. 106722. PMID 31874235 DOI: 10.1016/J.Ympev.2019.106722  0.722
2019 Fong JJ, Stuart BL, Mccormack TEM, Parham JF. First Genetic Data of the Critically Endangered Vietnamese Pond Turtle (Mauremys annamensis) from Known-locality Specimens Current Herpetology. 38: 140. DOI: 10.5358/Hsj.38.140  0.77
2018 Magallanes I, Parham JF, Santos GP, Velez-Juarbe J. A new tuskless walrus from the Miocene of Orange County, California, with comments on the diversity and taxonomy of odobenids. Peerj. 6: e5708. PMID 30345169 DOI: 10.7717/Peerj.5708  0.752
2018 Gentry AD, Parham JF, Ehret DJ, Ebersole JA. A new species of Peritresius Leidy, 1856 (Testudines: Pan-Cheloniidae) from the Late Cretaceous (Campanian) of Alabama, USA, and the occurrence of the genus within the Mississippi Embayment of North America. Plos One. 13: e0195651. PMID 29668704 DOI: 10.1371/Journal.Pone.0195651  0.51
2018 Arakelyan M, Türkozan O, Hezaveh N, Parham JF. Ecomorphology of tortoises (Testudo graeca complex) from the Araks River Valley Russian Journal of Herpetology. 25: 245. DOI: 10.30906/1026-2296-2018-25-4-245-252  0.349
2016 Pyenson ND, Parham JF, Velez-Juarbe J. The dilemma of trade samples and the importance of museum vouchers-caveats from a study on the extinction of Steller's sea cow: a comment on Crerar et al. (2014). Biology Letters. 12. PMID 26843552 DOI: 10.1098/Rsbl.2015.0149  0.642
2016 Santos GP, Parham JF, Beatty BL. New data on the ontogeny and senescence of Desmostylus (Desmostylia, Mammalia) Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2016.1078344  0.773
2016 Kloess PA, Parham JF. A specimen-based approach to reconstructing the late Neogene seabird communities of California Palaeogeography, Palaeoclimatology, Palaeoecology. 468: 473-484. DOI: 10.1016/J.Palaeo.2016.12.042  0.732
2016 Auliya M, Altherr S, Ariano-Sanchez D, Baard EH, Brown C, Brown RM, Cantu J, Gentile G, Gildenhuys P, Henningheim E, Hintzmann J, Kanari K, Krvavac M, Lettink M, Lippert J, ... ... Parham JF, et al. Trade in live reptiles, its impact on wild populations, and the role of the European market Biological Conservation. 204: 103-119. DOI: 10.1016/J.Biocon.2016.05.017  0.454
2015 Ksepka DT, Parham JF, Allman JF, Benton MJ, Carrano MT, Cranston KA, Donoghue PC, Head JJ, Hermsen EJ, Irmis RB, Joyce WG, Kohli M, Lamm KD, Leehr D, Patané JL, et al. The Fossil Calibration Database-A New Resource for Divergence Dating. Systematic Biology. PMID 25922515 DOI: 10.1093/Sysbio/Syv025  0.758
2015 Crawford NG, Parham JF, Sellas AB, Faircloth BC, Glenn TC, Papenfuss TJ, Henderson JB, Hansen MH, Simison WB. A phylogenomic analysis of turtles. Molecular Phylogenetics and Evolution. 83: 250-7. PMID 25450099 DOI: 10.1016/J.Ympev.2014.10.021  0.815
2015 Warnock RC, Parham JF, Joyce WG, Lyson TR, Donoghue PC. Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors. Proceedings. Biological Sciences / the Royal Society. 282: 20141013. PMID 25429012 DOI: 10.1098/Rspb.2014.1013  0.328
2015 David Polly P, Ksepka DT, Parham JF. Announcing the fossil calibration series and database Palaeontologia Electronica. 18. DOI: 10.26879/151E  0.403
2014 Rocha LA, Aleixo A, Allen G, Almeda F, Baldwin CC, Barclay MV, Bates JM, Bauer AM, Benzoni F, Berns CM, Berumen ML, Blackburn DC, Blum S, Bolaños F, Bowie RC, ... ... Parham JF, et al. Specimen collection: an essential tool. Science (New York, N.Y.). 344: 814-5. PMID 24855245 DOI: 10.1126/Science.344.6186.814  0.788
2014 Pyenson ND, Gutstein CS, Parham JF, Le Roux JP, Chavarría CC, Little H, Metallo A, Rossi V, Valenzuela-Toro AM, Velez-Juarbe J, Santelli CM, Rogers DR, Cozzuol MA, Suárez ME. Repeated mass strandings of Miocene marine mammals from Atacama Region of Chile point to sudden death at sea. Proceedings. Biological Sciences / the Royal Society. 281: 20133316. PMID 24573855 DOI: 10.1098/Rspb.2013.3316  0.653
2014 Pyenson ND, Kelley NP, Parham JF. Marine tetrapod macroevolution: Physical and biological drivers on 250Ma of invasions and evolution in ocean ecosystems Palaeogeography, Palaeoclimatology, Palaeoecology. 400: 1-8. DOI: 10.1016/J.Palaeo.2014.02.018  0.7
2014 Parham JF, Otero RA, Suárez ME. A sea turtle skull from the Cretaceous of Chile with comments on the taxonomy and biogeography of Euclastes (formerly Osteopygis) Cretaceous Research. 49: 181-189. DOI: 10.1016/J.Cretres.2014.03.004  0.353
2013 Parham JF, Papenfuss TJ, Dijk PP, Wilson BS, Marte C, Schettino LR, Brian Simison W. Genetic introgression and hybridization in Antillean freshwater turtles (Trachemys) revealed by coalescent analyses of mitochondrial and cloned nuclear markers. Molecular Phylogenetics and Evolution. 67: 176-87. PMID 23353072 DOI: 10.1016/J.Ympev.2013.01.004  0.759
2013 Papenfuss TJ, Parham JF. Four New Species of California Legless Lizards (Anniella) Breviora. 536: 1-17. DOI: 10.3099/Mcz10.1  0.709
2013 Joyce WG, Parham JF, Lyson TR, Warnock RCM, Donoghue PCJ. A divergence dating analysis of turtles using fossil calibrations: An example of best practices Journal of Paleontology. 87: 612-634. DOI: 10.1666/12-149  0.382
2013 Simison WB, Sellas AB, Feldheim KA, Parham JF. Isolation and characterization of microsatellite markers for identifying hybridization and genetic pollution associated with red-eared slider turtles (Trachemys scripta elegans) Conservation Genetics Resources. 5: 1139-1140. DOI: 10.1007/S12686-013-9978-5  0.733
2012 Parham JF, Donoghue PC, Bell CJ, Calway TD, Head JJ, Holroyd PA, Inoue JG, Irmis RB, Joyce WG, Ksepka DT, Patané JS, Smith ND, Tarver JE, van Tuinen M, Yang Z, et al. Best practices for justifying fossil calibrations. Systematic Biology. 61: 346-59. PMID 22105867 DOI: 10.1093/Sysbio/Syr107  0.797
2012 Otero RA, Parham JF, Soto-Acuña S, Jimenez-Huidobro P, Rubilar-Rogers D. Marine reptiles from Late Cretaceous (early Maastrichtian) deposits in Algarrobo, central Chile Cretaceous Research. 35: 124-132. DOI: 10.1016/J.Cretres.2011.12.003  0.415
2012 Parham JF, Stuart BL, Danilov IG, Ananjeva NB. A genetic characterization of CITES-listed Iranian tortoises (Testudo graeca) through the sequencing of topotypic samples and a 19th century holotype Herpetological Journal. 22: 73-78.  0.548
2011 Ksepka DT, Benton MJ, Carrano MT, Gandolfo MA, Head JJ, Hermsen EJ, Joyce WG, Lamm KS, Patané JS, Phillips MJ, Polly PD, Van Tuinen M, Ware JL, Warnock RC, Parham JF. Synthesizing and databasing fossil calibrations: divergence dating and beyond. Biology Letters. 7: 801-3. PMID 21525049 DOI: 10.1098/Rsbl.2011.0356  0.621
2011 Bauer AM, Parham JF, Brown RM, Stuart BL, Grismer L, Papenfuss TJ, Böhme W, Savage JM, Carranza S, Grismer JL, Wagner P, Schmitz A, Ananjeva NB, Inger RF. Availability of new Bayesian-delimited gecko names and the importance of character-based species descriptions. Proceedings. Biological Sciences / the Royal Society. 278: 490-2; discussion 49. PMID 20961901 DOI: 10.1098/Rspb.2010.1330  0.789
2010 Parham JF, Pyenson ND. New sea turtle from the Miocene of Peru and the iterative evolution of feeding ecomorphologies since the Cretaceous Journal of Paleontology. 84: 231-247. DOI: 10.1666/09-077R.1  0.72
2010 Türkozan O, Kiremit F, Parham JF, Olgun K, Ta?kavak E. A quantitative reassessment of morphology-based taxonomic schemes for Turkish tortoises (Testudo graeca) Amphibia Reptilia. 31: 69-83. DOI: 10.1163/156853810790457894  0.456
2009 Parham JF, Papenfuss TJ. High genetic diversity among fossorial lizard populations (Anniella pulchra) in a rapidly developing landscape (Central California) Conservation Genetics. 10: 169-176. DOI: 10.1007/S10592-008-9544-Y  0.696
2008 Shi H, Fong JJ, Parham JF, Pang J, Wang J, Hong M, Zhang YP. Mitochondrial variation of the "eyed" turtles (Sacalia) based on known-locality and trade specimens. Molecular Phylogenetics and Evolution. 49: 1025-9. PMID 18938252 DOI: 10.1016/J.Ympev.2008.10.001  0.682
2008 Parham JF, Outerbridge ME, Stuart BL, Wingate DB, Erlenkeuser H, Papenfuss TJ. Introduced delicacy or native species? A natural origin of Bermudian terrapins supported by fossil and genetic data. Biology Letters. 4: 216-9. PMID 18270164 DOI: 10.1098/Rsbl.2007.0599  0.79
2008 Parham JF, Irmis RB. Caveats on the use of fossil calibrations for molecular dating: a comment on Near et al. The American Naturalist. 171: 132-6; author reply . PMID 18171158 DOI: 10.1086/524198  0.661
2008 Arakelyan M, Parham JF. The geographic distribution of Turtles in Armenia and the Nagorno-Karabakh Republic (Artsakh) Chelonian Conservation and Biology. 7: 70-77. DOI: 10.2744/Ccb-0664.1  0.391
2008 Danilov IG, Parham JF. A reassessment of some poorly known turtles from the Middle Jurassic of China, with comments on the antiquity of extant turtles Journal of Vertebrate Paleontology. 28: 306-318. DOI: 10.1671/0272-4634(2008)28[306:Arospk]2.0.Co;2  0.485
2008 Meiling H, Haitao S, Lirong F, Shiping G, Fong JJ, Parham JF. Scientific refutation of traditional Chinese medicine claims about turtles Applied Herpetology. 5: 173-187. DOI: 10.1163/157075408784648835  0.686
2008 Haitao S, Parham JF, Zhiyong F, Meiling H, Feng Y. Evidence for the massive scale of turtle farming in China Oryx. 42: 147-150. DOI: 10.1017/S0030605308000562  0.424
2007 Haitao S, Parham JF, Lau M, Tien-Hsi C. Farming endangered turtles to extinction in China. Conservation Biology : the Journal of the Society For Conservation Biology. 21: 5-6. PMID 17298500 DOI: 10.1111/J.1523-1739.2006.00622_2.X  0.329
2007 Danilov IG, Parham JF. The type series of 'Sinemys' wuerhoensis, a problematic turtle from the lower cretaceous of China, includes at least three taxa Palaeontology. 50: 431-444. DOI: 10.1111/J.1475-4983.2006.00632.X  0.395
2007 Fong JJ, Parham JF, Shi H, Stuart BL, Carter RL. A genetic survey of heavily exploited, endangered turtles: Caveats on the conservation value of trade animals Animal Conservation. 10: 452-460. DOI: 10.1111/J.1469-1795.2007.00131.X  0.788
2007 Stuart BL, Parham JF. Recent hybrid origin of three rare Chinese turtles Conservation Genetics. 8: 169-175. DOI: 10.1007/S10592-006-9159-0  0.673
2006 Macey JR, Schulte JA, Strasburg JL, Brisson JA, Larson A, Ananjeva NB, Wang Y, Parham JF, Papenfuss TJ. Assembly of the eastern North American herpetofauna: new evidence from lizards and frogs. Biology Letters. 2: 388-92. PMID 17148411 DOI: 10.1098/Rsbl.2006.0473  0.698
2006 Parham JF, Feldman CR, Boore JL. The complete mitochondrial genome of the enigmatic bigheaded turtle (Platysternon): description of unusual genomic features and the reconciliation of phylogenetic hypotheses based on mitochondrial and nuclear DNA. Bmc Evolutionary Biology. 6: 11. PMID 16464263 DOI: 10.1186/1471-2148-6-11  0.765
2006 Parham JF, Macey JR, Papenfuss TJ, Feldman CR, Türkozan O, Polymeni R, Boore J. The phylogeny of Mediterranean tortoises and their close relatives based on complete mitochondrial genome sequences from museum specimens. Molecular Phylogenetics and Evolution. 38: 50-64. PMID 16150614 DOI: 10.1016/J.Ympev.2005.07.015  0.815
2006 Danilov IG, Parham JF. A redescription of 'Plesiochelys' tatsuensis from the Late Jurassic of China, with comments on the antiquity of the crown clade Cryptodira Journal of Vertebrate Paleontology. 26: 573-580. DOI: 10.1671/0272-4634(2006)26[573:Aroptf]2.0.Co;2  0.489
2006 Parmley D, Hutchison JH, Parham JF. Diverse turtle fauna from the late eocene of Georgia including the oldest records of aquatic testudinoids in southeastern North America Journal of Herpetology. 40: 343-350. DOI: 10.1670/0022-1511(2006)40[343:Dtfftl]2.0.Co;2  0.619
2006 de Lapparent de Broin F, Bour R, Parham JF, Perälä J. Eurotestudo, a new genus for the species Testudo hermanni Gmelin, 1789 (Chelonii, Testudinidae) Comptes Rendus - Palevol. 5: 803-811. DOI: 10.1016/J.Crpv.2006.03.002  0.493
2005 Holroyd PA, Parham JF, Hutchison JH. A reappraisal of some Paleogene turtles from the southeastern United States Journal of Vertebrate Paleontology. 25: 979-982. DOI: 10.1671/0272-4634(2005)025[0979:Arospt]2.0.Co;2  0.682
2005 Danilov IG, Parham JF. A reassessment of the referral of an isolated skull from the late cretaceous of uzbekistan to the stem-testudinoid turtle genus lindholmemys Journal of Vertebrate Paleontology. 25: 784-791. DOI: 10.1671/0272-4634(2005)025[0784:Arotro]2.0.Co;2  0.306
2005 Parham JF. A reassessment of the referral of sea turtle skulls to the genus Osteopygis (Late Cretaceous, New Jersey, USA) Journal of Vertebrate Paleontology. 25: 71-77. DOI: 10.1671/0272-4634(2005)025[0071:Arotro]2.0.Co;2  0.407
2005 Shi H, Parham JF, Simison WB, Wang J, Gong S, Fu B. A report on the hybridization between two species of threatened Asian box turtles (Testudines: Cuora) in the wild on Hainan Island (China) with comments on the origin of 'serrata'-like turtles Amphibia Reptilia. 26: 377-381. DOI: 10.1163/156853805774408487  0.748
2004 Parham JF, Stuart BL, Bour R, Fritz U. Evolutionary distinctiveness of the extinct Yunnan box turtle (Cuora yunnanensis) revealed by DNA from an old museum specimen. Proceedings. Biological Sciences / the Royal Society. 271: S391-4. PMID 15801584 DOI: 10.1098/Rsbl.2004.0217  0.629
2004 Stuart BL, Parham JF. Molecular phylogeny of the critically endangered Indochinese box turtle (Cuora galbinifrons). Molecular Phylogenetics and Evolution. 31: 164-77. PMID 15019617 DOI: 10.1016/S1055-7903(03)00258-6  0.678
2004 Joyce WG, Parham JF, Gauthier JA. Developing a protocol for the conversion of rank-based taxon names to phylogenetically defined clade names, as exemplified by turtles Journal of Paleontology. 78: 989-1013. DOI: 10.1666/0022-3360(2004)078<0989:Dapftc>2.0.Co;2  0.68
2003 Parham JF, Hutchison JH. A new eucryptodiran turtle from the Late Cretaceous of North America (Dinosaur Provincial Park, Alberta, Canada) Journal of Vertebrate Paleontology. 23: 783-798. DOI: 10.1671/5  0.614
2003 Holroyd PA, Parham JF. The Antiquity of African tortoises Journal of Vertebrate Paleontology. 23: 688-690. DOI: 10.1671/1870  0.636
2002 Feldman CR, Parham JF. Molecular phylogenetics of emydine turtles: taxonomic revision and the evolution of shell kinesis. Molecular Phylogenetics and Evolution. 22: 388-98. PMID 11884163 DOI: 10.1006/Mpev.2001.1070  0.744
2002 Fong JJ, Parham JF, Fu J. A Reassessment of the Distribution of Cuora flavomarginata Gray 1863 on Mainland China Russian Journal of Herpetology. 9: 8-14. DOI: 10.30906/1026-2296-2002-9-1-8-14  0.7
2002 Parham JF, Simison WB, Kozak KH, Feldman CR, Shi H. VOLUME 4 PART 4 NOVEMBER 2001, pp 357–367 New Chinese turtles: endangered or invalid? A reassessment of two species using mitochondrial DNA, allozyme electrophoresis and known-locality specimens Animal Conservation. 5: 86-86. DOI: 10.1017/S1367943002001117  0.717
2001 Parham JF, Simison WB, Kozak KH, Feldman CR, Shi H. New Chinese turtles: Endangered or invalid? A reassessment of two species using mitochondrial DNA, allozyme electrophoresis and known-locality specimens Animal Conservation. 4: 357-367. DOI: 10.1017/S1367943001001421  0.819
1997 Parham JF, Zug GR. Age and growth of loggerhead sea turtles (Caretta caretta) of Coastal Georgia: An assessment of skeletochronological age-estimates Bulletin of Marine Science. 61: 287-304.  0.576
1996 Parham JF, Dodd CK, Zug GR. Skeletochronological age estimates for the Red Hills salamander, Phaeognathus hubrichti Journal of Herpetology. 30: 401-404. DOI: 10.2307/1565178  0.66
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