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Daniel Murad Ibrahim, PhD - Publications

Affiliations: 
Max Planck Institute for Molecular Genetics, Berlin, Berlin, Germany 
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21/22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Huang X, Henck J, Qiu C, Sreenivasan VKA, Balachandran S, Amarie OV, Hrabě de Angelis M, Behncke RY, Chan WL, Despang A, Dickel DE, Duran M, Feuchtinger A, Fuchs H, Gailus-Durner V, ... ... Ibrahim DM, et al. Single-cell, whole-embryo phenotyping of mammalian developmental disorders. Nature. PMID 37968388 DOI: 10.1038/s41586-023-06548-w  0.621
2023 Weischenfeldt J, Ibrahim DM. When 3D genome changes cause disease: the impact of structural variations in congenital disease and cancer. Current Opinion in Genetics & Development. 80: 102048. PMID 37156210 DOI: 10.1016/j.gde.2023.102048  0.308
2022 Ringel AR, Szabo Q, Chiariello AM, Chudzik K, Schöpflin R, Rothe P, Mattei AL, Zehnder T, Harnett D, Laupert V, Bianco S, Hetzel S, Glaser J, Phan MHQ, Schindler M, ... Ibrahim DM, et al. Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes. Cell. 185: 3689-3704.e21. PMID 36179666 DOI: 10.1016/j.cell.2022.09.006  0.739
2020 Basu S, Mackowiak SD, Niskanen H, Knezevic D, Asimi V, Grosswendt S, Geertsema H, Ali S, Jerković I, Ewers H, Mundlos S, Meissner A, Ibrahim DM, Hnisz D. Unblending of Transcriptional Condensates in Human Repeat Expansion Disease. Cell. PMID 32386547 DOI: 10.1016/J.Cell.2020.04.018  0.749
2020 Ibrahim DM, Mundlos S. The role of 3D chromatin domains in gene regulation: a multi-facetted view on genome organization. Current Opinion in Genetics & Development. 61: 1-8. PMID 32199341 DOI: 10.1016/J.Gde.2020.02.015  0.639
2020 Ibrahim DM, Mundlos S. Three-dimensional chromatin in disease: What holds us together and what drives us apart? Current Opinion in Cell Biology. 64: 1-9. PMID 32036200 DOI: 10.1016/J.Ceb.2020.01.003  0.613
2019 Despang A, Schöpflin R, Franke M, Ali S, Jerković I, Paliou C, Chan WL, Timmermann B, Wittler L, Vingron M, Mundlos S, Ibrahim DM. Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture. Nature Genetics. PMID 31358994 DOI: 10.1038/S41588-019-0466-Z  0.796
2019 Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L, Steemers FJ, Trapnell C, Shendure J. The single-cell transcriptional landscape of mammalian organogenesis. Nature. PMID 30787437 DOI: 10.1038/S41586-019-0969-X  0.575
2019 Kraft K, Magg A, Heinrich V, Riemenschneider C, Schöpflin R, Markowski J, Ibrahim DM, Acuna-Hidalgo R, Despang A, Andrey G, Wittler L, Timmermann B, Vingron M, Mundlos S. Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature Cell Biology. PMID 30742094 DOI: 10.1038/S41556-019-0273-X  0.798
2018 Hernandez-Miranda LR, Ibrahim DM, Ruffault PL, Larrosa M, Balueva K, Müller T, Weerd W, Stolte-Dijkstra I, Hostra RMW, Brunet JF, Fortin G, Mundlos S, Birchmeier C. Mutation in precludes transcription factor cooperativity and causes congenital hypoventilation in humans and mice. Proceedings of the National Academy of Sciences of the United States of America. PMID 30487221 DOI: 10.1073/Pnas.1813520115  0.528
2017 Vallecillo-García P, Orgeur M, Vom Hofe-Schneider S, Stumm J, Kappert V, Ibrahim DM, Börno ST, Hayashi S, Relaix F, Hildebrandt K, Sengle G, Koch M, Timmermann B, Marazzi G, Sassoon DA, et al. Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development. Nature Communications. 8: 1218. PMID 29084951 DOI: 10.1038/S41467-017-01120-3  0.632
2017 Jerković I, Ibrahim DM, Andrey G, Haas S, Hansen P, Janetzki C, González Navarrete I, Robinson PN, Hecht J, Mundlos S. Genome-Wide Binding of Posterior HOXA/D Transcription Factors Reveals Subgrouping and Association with CTCF. Plos Genetics. 13: e1006567. PMID 28103242 DOI: 10.1371/Journal.Pgen.1006567  0.743
2016 Andrey G, Schöpflin R, Jerković I, Heinrich V, Ibrahim DM, Paliou C, Hochradel M, Timmermann B, Haas S, Vingron M, Mundlos S. Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding. Genome Research. PMID 27923844 DOI: 10.1101/Gr.213066.116  0.737
2016 Franke M, Ibrahim DM, Andrey G, Schwarzer W, Heinrich V, Schöpflin R, Kraft K, Kempfer R, Jerković I, Chan WL, Spielmann M, Timmermann B, Wittler L, Kurth I, Cambiaso P, et al. Formation of new chromatin domains determines pathogenicity of genomic duplications. Nature. PMID 27706140 DOI: 10.1038/Nature19800  0.727
2016 Ibrahim DM, Tayebi N, Knaus A, Stiege AC, Sahebzamani A, Hecht J, Mundlos S, Spielmann M. A homozygous HOXD13 missense mutation causes a severe form of synpolydactyly with metacarpal to carpal transformation. American Journal of Medical Genetics. Part A. 170: 615-21. PMID 26581570 DOI: 10.1002/Ajmg.A.37464  0.502
2015 Hansen P, Hecht J, Ibrahim DM, Krannich A, Truss M, Robinson PN. Saturation analysis of ChIP-seq data for reproducible identification of binding peaks. Genome Research. 25: 1391-400. PMID 26163319 DOI: 10.1101/Gr.189894.115  0.398
2015 Kraft K, Geuer S, Will AJ, Chan WL, Paliou C, Borschiwer M, Harabula I, Wittler L, Franke M, Ibrahim DM, Kragesteen BK, Spielmann M, Mundlos S, Lupiáñez DG, Andrey G. Deletions, Inversions, Duplications: Engineering of Structural Variants using CRISPR/Cas in Mice. Cell Reports. PMID 25660031 DOI: 10.1016/J.Celrep.2015.01.016  0.763
2014 Kuss P, Kraft K, Stumm J, Ibrahim D, Vallecillo-Garcia P, Mundlos S, Stricker S. Regulation of cell polarity in the cartilage growth plate and perichondrium of metacarpal elements by HOXD13 and WNT5A. Developmental Biology. 385: 83-93. PMID 24161848 DOI: 10.1016/J.Ydbio.2013.10.013  0.735
2013 Ibrahim DM, Hansen P, Rödelsperger C, Stiege AC, Doelken SC, Horn D, Jäger M, Janetzki C, Krawitz P, Leschik G, Wagner F, Scheuer T, Schmidt-von Kegler M, Seemann P, Timmermann B, et al. Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations. Genome Research. 23: 2091-102. PMID 23995701 DOI: 10.1101/Gr.157610.113  0.608
2013 Ibrahim DM, Biehs B, Kornberg TB, Klebes A. Microarray comparison of anterior and posterior Drosophila wing imaginal disc cells identifies novel wing genes. G3 (Bethesda, Md.). 3: 1353-62. PMID 23749451 DOI: 10.1534/G3.113.006569  0.757
2012 Spielmann M, Brancati F, Krawitz PM, Robinson PN, Ibrahim DM, Franke M, Hecht J, Lohan S, Dathe K, Nardone AM, Ferrari P, Landi A, Wittler L, Timmermann B, Chan D, et al. Homeotic arm-to-leg transformation associated with genomic rearrangements at the PITX1 locus. American Journal of Human Genetics. 91: 629-35. PMID 23022097 DOI: 10.1016/J.Ajhg.2012.08.014  0.611
Low-probability matches (unlikely to be authored by this person)
2015 Ibrahim DM. Missense-Mutationen in Transkriptionsfaktoren Medizinische Genetik. 27: 1-6. DOI: 10.1007/S11825-015-0034-6  0.219
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