Vicente Pelechano - Publications

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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Wang J, Li B, Marques S, Steinmetz LM, Wei W, Pelechano V. TIF-Seq2 disentangles overlapping isoforms in complex human transcriptomes. Nucleic Acids Research. PMID 32816037 DOI: 10.1093/Nar/Gkaa691  0.68
2019 Wei W, Hennig BP, Wang J, Zhang Y, Piazza I, Pareja Sanchez Y, Chabbert CD, Adjalley SH, Steinmetz LM, Pelechano V. Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast. Genome Research. PMID 31740578 DOI: 10.1101/Gr.243378.118  0.68
2019 Garcia-Moreno M, Noerenberg M, Ni S, Järvelin AI, González-Almela E, Lenz CE, Bach-Pages M, Cox V, Avolio R, Davis T, Hester S, Sohier TJM, Li B, Heikel G, Michlewski G, ... ... Pelechano V, et al. System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Molecular Cell. PMID 30799147 DOI: 10.1016/J.Molcel.2019.01.017  0.44
2018 Chabbert CD, Adjalley SH, Steinmetz LM, Pelechano V. Multiplexed ChIP-Seq Using Direct Nucleosome Barcoding: A Tool for High-Throughput Chromatin Analysis. Methods in Molecular Biology (Clifton, N.J.). 1689: 177-194. PMID 29027175 DOI: 10.1007/978-1-4939-7380-4_16  0.68
2017 Gómez-Herreros F, Margaritis T, Rodríguez-Galán O, Pelechano V, Begley V, Millán-Zambrano G, Morillo-Huesca M, Muñoz-Centeno MC, Pérez-Ortín JE, de la Cruz J, Holstege FCP, Chávez S. The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation. Nucleic Acids Research. PMID 28637236 DOI: 10.1093/nar/gkx529  0.52
2016 Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, et al. A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.). 353. PMID 27708008 DOI: 10.1126/Science.Aaf1420  0.68
2016 Chen Y, Pai AA, Herudek J, Lubas M, Meola N, Järvelin AI, Andersson R, Pelechano V, Steinmetz LM, Jensen TH, Sandelin A. Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters. Nature Genetics. PMID 27455346 DOI: 10.1038/Ng.3616  0.68
2016 Chlamydas S, Holz H, Samata M, Chelmicki T, Georgiev P, Pelechano V, Dündar F, Dasmeh P, Mittler G, Cadete FT, Ramírez F, Conrad T, Wei W, Raja S, Manke T, et al. Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation. Nature Structural & Molecular Biology. PMID 27183194 DOI: 10.1038/Nsmb.3233  0.68
2016 Adjalley SH, Chabbert CD, Klaus B, Pelechano V, Steinmetz LM. Landscape and Dynamics of Transcription Initiation in the Malaria Parasite Plasmodium falciparum. Cell Reports. PMID 26947071 DOI: 10.1016/J.Celrep.2016.02.025  0.68
2016 Pelechano V, Wei W, Steinmetz LM. Genome-wide quantification of 5'-phosphorylated mRNA degradation intermediates for analysis of ribosome dynamics. Nature Protocols. 11: 359-76. PMID 26820793 DOI: 10.1038/Nprot.2016.026  0.68
2016 Jordán-Pla A, Miguel A, Serna E, Pelechano V, Pérez-Ortín JE. Biotin-Genomic Run-On (Bio-GRO): A High-Resolution Method for the Analysis of Nascent Transcription in Yeast. Methods in Molecular Biology (Clifton, N.J.). 1361: 125-39. PMID 26483020 DOI: 10.1007/978-1-4939-3079-1_8  0.52
2016 Wilkening S, Pelechano V, Steinmetz LM. Genome-Wide Identification of Alternative Polyadenylation Events Using 3'T-Fill. Methods in Molecular Biology (Clifton, N.J.). 1358: 295-302. PMID 26463391 DOI: 10.1007/978-1-4939-3067-8_18  0.68
2015 García-Martínez J, Delgado-Ramos L, Ayala G, Pelechano V, Medina DA, Carrasco F, González R, Andrés-León E, Steinmetz L, Warringer J, Chávez S, Pérez-Ortín JE. The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons. Nucleic Acids Research. PMID 26717982 DOI: 10.1093/Nar/Gkv1512  0.68
2015 Schmid M, Olszewski P, Pelechano V, Gupta I, Steinmetz LM, Jensen TH. The Nuclear PolyA-Binding Protein Nab2p Is Essential for mRNA Production. Cell Reports. 12: 128-39. PMID 26119729 DOI: 10.1016/J.Celrep.2015.06.008  0.68
2015 Pelechano V, Wei W, Steinmetz LM. Widespread Co-translational RNA Decay Reveals Ribosome Dynamics. Cell. 161: 1400-12. PMID 26046441 DOI: 10.1016/J.Cell.2015.05.008  0.68
2015 Chabbert CD, Adjalley SH, Klaus B, Fritsch ES, Gupta I, Pelechano V, Steinmetz LM. A high-throughput ChIP-Seq for large-scale chromatin studies. Molecular Systems Biology. 11: 777. PMID 25583149 DOI: 10.15252/Msb.20145776  0.68
2015 Jordán-Pla A, Gupta I, de Miguel-Jiménez L, Steinmetz LM, Chávez S, Pelechano V, Pérez-Ortín JE. Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle. Nucleic Acids Research. 43: 787-802. PMID 25550430 DOI: 10.1093/Nar/Gku1349  0.68
2015 Velten L, Anders S, Pekowska A, Järvelin AI, Huber W, Pelechano V, Steinmetz LM. Single-cell polyadenylation site mapping reveals 3′ isoform choice variability Molecular Systems Biology. 11. DOI: 10.15252/msb.20156198  0.68
2014 Pelechano V, Wei W, Jakob P, Steinmetz LM. Genome-wide identification of transcript start and end sites by transcript isoform sequencing. Nature Protocols. 9: 1740-59. PMID 24967623 DOI: 10.1038/Nprot.2014.121  0.68
2014 Piazza I, Rutkowska A, Ori A, Walczak M, Metz J, Pelechano V, Beck M, Haering CH. Association of condensin with chromosomes depends on DNA binding by its HEAT-repeat subunits. Nature Structural & Molecular Biology. 21: 560-8. PMID 24837193 DOI: 10.1038/Nsmb.2831  0.68
2014 Gupta I, Clauder-Münster S, Klaus B, Järvelin AI, Aiyar RS, Benes V, Wilkening S, Huber W, Pelechano V, Steinmetz LM. Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions. Molecular Systems Biology. 10: 719. PMID 24569168 DOI: 10.1002/Msb.135068  0.68
2013 Pelechano V, Steinmetz LM. Gene regulation by antisense transcription. Nature Reviews. Genetics. 14: 880-93. PMID 24217315 DOI: 10.1038/Nrg3594  0.68
2013 Ntini E, Järvelin AI, Bornholdt J, Chen Y, Boyd M, Jørgensen M, Andersson R, Hoof I, Schein A, Andersen PR, Andersen PK, Preker P, Valen E, Zhao X, Pelechano V, et al. Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality. Nature Structural & Molecular Biology. 20: 923-8. PMID 23851456 DOI: 10.1038/Nsmb.2640  0.68
2013 Pelechano V, Wei W, Steinmetz LM. Extensive transcriptional heterogeneity revealed by isoform profiling. Nature. 497: 127-31. PMID 23615609 DOI: 10.1038/Nature12121  0.68
2013 Wilkening S, Pelechano V, Järvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM. An efficient method for genome-wide polyadenylation site mapping and RNA quantification. Nucleic Acids Research. 41: e65. PMID 23295673 DOI: 10.1093/Nar/Gks1249  0.68
2012 Pelechano V, Wilkening S, Järvelin AI, Tekkedil MM, Steinmetz LM. Genome-wide polyadenylation site mapping. Methods in Enzymology. 513: 271-96. PMID 22929774 DOI: 10.1016/B978-0-12-391938-0.00012-4  0.68
2012 Schmid M, Poulsen MB, Olszewski P, Pelechano V, Saguez C, Gupta I, Steinmetz LM, Moore C, Jensen TH. Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Molecular Cell. 47: 267-80. PMID 22683267 DOI: 10.1016/J.Molcel.2012.05.005  0.68
2011 Wei W, Pelechano V, Järvelin AI, Steinmetz LM. Functional consequences of bidirectional promoters. Trends in Genetics : Tig. 27: 267-76. PMID 21601935 DOI: 10.1016/J.Tig.2011.04.002  0.68
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