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Harriet Alexander - Publications

Affiliations: 
Woods Hole Oceanographic Institution, Falmouth, MA, United States 
Area:
Oceanography, microbiology
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Alexander H, Hu SK, Krinos AI, Pachiadaki M, Tully BJ, Neely CJ, Reiter T. Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton. Mbio. e0167623. PMID 37947402 DOI: 10.1128/mbio.01676-23  0.749
2023 Mars Brisbin M, Schofield A, McIlvin MR, Krinos AI, Alexander H, Saito MA. Vitamin B conveys a protective advantage to phycosphere-associated bacteria at high temperatures. Isme Communications. 3: 88. PMID 37626172 DOI: 10.1038/s43705-023-00298-6  0.717
2023 Krinos AI, Cohen NR, Follows MJ, Alexander H. Correction: Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly. Bmc Bioinformatics. 24: 185. PMID 37147597 DOI: 10.1186/s12859-023-05313-0  0.7
2023 Krinos AI, Cohen NR, Follows MJ, Alexander H. Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly. Bmc Bioinformatics. 24: 74. PMID 36869298 DOI: 10.1186/s12859-022-05121-y  0.735
2020 Choi CJ, Jimenez V, Needham DM, Poirier C, Bachy C, Alexander H, Wilken S, Chavez FP, Sudek S, Giovannoni SJ, Worden AZ. Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans. Frontiers in Microbiology. 11: 542372. PMID 33101224 DOI: 10.3389/fmicb.2020.542372  0.309
2020 Johnson WM, Alexander H, Bier RL, Miller DR, Muscarella ME, Pitz KJ, Smith H. Auxotrophic interactions: A stabilizing attribute of aquatic microbial communities? Fems Microbiology Ecology. PMID 32520336 DOI: 10.1093/Femsec/Fiaa115  0.373
2020 Alexander H, Rouco M, Haley ST, Dyhrman ST. Transcriptional response of Emiliania huxleyi under changing nutrient environments in the North Pacific Subtropical Gyre. Environmental Microbiology. PMID 32064744 DOI: 10.1111/1462-2920.14942  0.667
2019 Wurch LL, Alexander H, Frischkorn KR, Haley ST, Gobler CJ, Dyhrman ST. Transcriptional Shifts Highlight the Role of Nutrients in Harmful Brown Tide Dynamics. Frontiers in Microbiology. 10: 136. PMID 30809203 DOI: 10.3389/Fmicb.2019.00136  0.718
2018 Johnson LK, Alexander H, Brown CT. Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes. Gigascience. PMID 30544207 DOI: 10.1093/Gigascience/Giy158  0.344
2018 Alexander H, Johnson LK, Brown CT. Keeping it light: (Re)analyzing community-wide datasets without major infrastructure. Gigascience. PMID 30544142 DOI: 10.1093/Gigascience/Giy159  0.31
2018 Hu SK, Liu Z, Alexander H, Campbell V, Connell PE, Dyhrman ST, Heidelberg KB, Caron DA. Shifting metabolic priorities among key protistan taxa within and below the euphotic zone. Environmental Microbiology. PMID 29708635 DOI: 10.1111/1462-2920.14259  0.67
2018 Rouco M, Frischkorn KR, Haley ST, Alexander H, Dyhrman ST. Transcriptional patterns identify resource controls on the diazotroph Trichodesmium in the Atlantic and Pacific oceans. The Isme Journal. PMID 29491494 DOI: 10.1038/S41396-018-0087-Z  0.746
2017 Haley ST, Alexander H, Juhl AR, Dyhrman ST. Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress. Harmful Algae. 68: 258-270. PMID 28962986 DOI: 10.1016/J.Hal.2017.07.001  0.684
2017 Harke MJ, Juhl AR, Haley ST, Alexander H, Dyhrman ST. Conserved Transcriptional Responses to Nutrient Stress in Bloom-Forming Algae. Frontiers in Microbiology. 8: 1279. PMID 28769884 DOI: 10.3389/Fmicb.2017.01279  0.684
2017 Moniruzzaman M, Wurch LL, Alexander H, Dyhrman ST, Gobler CJ, Wilhelm SW. Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics. Nature Communications. 8: 16054. PMID 28656958 DOI: 10.1038/Ncomms16054  0.723
2017 Guy-Haim T, Alexander H, Bell TW, Bier RL, Bortolotti LE, Briseño-Avena C, Dong X, Flanagan AM, Grosse J, Grossmann L, Hasnain S, Hovel R, Johnston CA, Miller DR, Muscarella M, et al. What are the type, direction, and strength of species, community, and ecosystem responses to warming in aquatic mesocosm studies and their dependency on experimental characteristics? A systematic review protocol Environmental Evidence. 6. DOI: 10.1186/S13750-017-0084-0  0.334
2017 Kujawinski EB, Longnecker K, Alexander H, Dyhrman ST, Fiore CL, Haley ST, Johnson WM. Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton Limnology and Oceanography Letters. 2: 119-129. DOI: 10.1002/Lol2.10043  0.368
2017 Durden JM, Luo JY, Alexander H, Flanagan AM, Grossmann L. Integrating “Big Data” into Aquatic Ecology: Challenges and Opportunities Limnology and Oceanography Bulletin. 26: 101-108. DOI: 10.1002/Lob.10213  0.343
2016 Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews. Microbiology. PMID 27867198 DOI: 10.1038/Nrmicro.2016.160  0.695
2016 Rouco M, Haley ST, Alexander H, Wilson ST, Karl DM, Dyhrman ST. Variable depth distribution of Trichodesmium clades in the North Pacific Ocean. Environmental Microbiology Reports. PMID 27753237 DOI: 10.1111/1758-2229.12488  0.663
2015 Alexander H, Rouco M, Haley ST, Wilson ST, Karl DM, Dyhrman ST. Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean. Proceedings of the National Academy of Sciences of the United States of America. PMID 26460011 DOI: 10.1073/Pnas.1518165112  0.681
2015 Alexander H, Jenkins BD, Rynearson TA, Dyhrman ST. Metatranscriptome analyses indicate resource partitioning between diatoms in the field. Proceedings of the National Academy of Sciences of the United States of America. 112: E2182-90. PMID 25870299 DOI: 10.1073/Pnas.1421993112  0.698
2012 Alexander H, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Dyhrman ST. Identifying reference genes with stable expression from high throughput sequence data. Frontiers in Microbiology. 3: 385. PMID 23162540 DOI: 10.3389/Fmicb.2012.00385  0.639
2012 Dyhrman ST, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Alexander H, Whitney LP, Drzewianowski A, Bulygin VV, Bertrand EM, Wu Z, Benitez-Nelson C, Heithoff A. The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response. Plos One. 7: e33768. PMID 22479440 DOI: 10.1371/Journal.Pone.0033768  0.724
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