Year |
Citation |
Score |
2022 |
Torosin NS, Golla TR, Lawlor MA, Cao W, Ellison CE. Mode and tempo of 3D genome evolution in Drosophila. Molecular Biology and Evolution. PMID 36201625 DOI: 10.1093/molbev/msac216 |
0.304 |
|
2019 |
Ellison CE, Cao W. Nanopore sequencing and Hi-C scaffolding provide insight into the evolutionary dynamics of transposable elements and piRNA production in wild strains of Drosophila melanogaster. Nucleic Acids Research. PMID 31754714 DOI: 10.1093/Nar/Gkz1080 |
0.43 |
|
2019 |
Ellison C, Bachtrog D. Recurrent gene co-amplification on Drosophila X and Y chromosomes. Plos Genetics. 15: e1008251. PMID 31329593 DOI: 10.1371/Journal.Pgen.1008251 |
0.348 |
|
2019 |
Shah K, Cao W, Ellison CE. Adenine Methylation in Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes. G3 (Bethesda, Md.). PMID 30988038 DOI: 10.1534/G3.119.400023 |
0.33 |
|
2019 |
Ellison C, Bachtrog D. Contingency in the convergent evolution of a regulatory network: Dosage compensation in Drosophila. Plos Biology. 17: e3000094. PMID 30742611 DOI: 10.1371/Journal.Pbio.3000094 |
0.458 |
|
2016 |
Branco S, Bi K, Liao HL, Gladieux P, Badouin H, Ellison CE, Nguyen NH, Vilgalys R, Peay KG, Taylor JW, Bruns TD. Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes. Molecular Ecology. PMID 27761941 DOI: 10.1111/Mec.13892 |
0.734 |
|
2015 |
Smukowski Heil CS, Ellison C, Dubin M, Noor MA. Recombining without Hotspots: A Comprehensive Evolutionary Portrait of Recombination in Two Closely Related Species of Drosophila. Genome Biology and Evolution. 7: 2829-42. PMID 26430062 DOI: 10.1093/Gbe/Evv182 |
0.468 |
|
2015 |
Taylor JW, Hann-Soden C, Branco S, Sylvain I, Ellison CE. Clonal reproduction in fungi. Proceedings of the National Academy of Sciences of the United States of America. 112: 8901-8. PMID 26195774 DOI: 10.1073/Pnas.1503159112 |
0.533 |
|
2015 |
Branco S, Gladieux P, Ellison CE, Kuo A, LaButti K, Lipzen A, Grigoriev IV, Liao HL, Vilgalys R, Peay KG, Taylor JW, Bruns TD. Genetic isolation between two recently diverged populations of a symbiotic fungus. Molecular Ecology. 24: 2747-58. PMID 25728665 DOI: 10.1111/Mec.13132 |
0.744 |
|
2015 |
Ellison CE, Bachtrog D. Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements. Elife. 4. PMID 25688566 DOI: 10.7554/Elife.05899 |
0.353 |
|
2015 |
Ellison CE, Bachtrog D. Author response: Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements Elife. DOI: 10.7554/Elife.05899.013 |
0.33 |
|
2015 |
Taylor JW, Hann-Soden C, Branco S, Sylvain I, Ellison CE. Clonal reproduction in fungi Proceedings of the National Academy of Sciences of the United States of America. 112: 8901-8908. DOI: 10.1073/pnas.1503159112 |
0.68 |
|
2014 |
Wong VL, Ellison CE, Eisen MB, Pachter L, Brem RB. Structural variation among wild and industrial strains of Penicillium chrysogenum. Plos One. 9: e96784. PMID 24824901 DOI: 10.1371/Journal.Pone.0096784 |
0.342 |
|
2014 |
Ellison CE, Kowbel D, Glass NL, Taylor JW, Brem RB. Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates. Mbio. 5: e01046-13. PMID 24692637 DOI: 10.1128/Mbio.01046-13 |
0.543 |
|
2013 |
Zhou Q, Ellison CE, Kaiser VB, Alekseyenko AA, Gorchakov AA, Bachtrog D. The epigenome of evolving Drosophila neo-sex chromosomes: dosage compensation and heterochromatin formation. Plos Biology. 11: e1001711. PMID 24265597 DOI: 10.1371/Journal.Pbio.1001711 |
0.366 |
|
2013 |
Alekseyenko AA, Ellison CE, Gorchakov AA, Zhou Q, Kaiser VB, Toda N, Walton Z, Peng S, Park PJ, Bachtrog D, Kuroda MI. Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes & Development. 27: 853-8. PMID 23630075 DOI: 10.1101/Gad.215426.113 |
0.369 |
|
2011 |
Roper M, Ellison C, Taylor JW, Glass NL. Nuclear and genome dynamics in multinucleate ascomycete fungi. Current Biology : Cb. 21: R786-93. PMID 21959169 DOI: 10.1016/J.Cub.2011.06.042 |
0.632 |
|
2011 |
Ellison CE, Stajich JE, Jacobson DJ, Natvig DO, Lapidus A, Foster B, Aerts A, Riley R, Lindquist EA, Grigoriev IV, Taylor JW. Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma. Genetics. 189: 55-69. PMID 21750257 DOI: 10.1534/Genetics.111.130690 |
0.741 |
|
2011 |
Ellison CE, Hall C, Kowbel D, Welch J, Brem RB, Glass NL, Taylor JW. Population genomics and local adaptation in wild isolates of a model microbial eukaryote. Proceedings of the National Academy of Sciences of the United States of America. 108: 2831-6. PMID 21282627 DOI: 10.1073/Pnas.1014971108 |
0.631 |
|
2011 |
Fishbein M, Chuba D, Ellison C, Mason-Gamer RJ, Lynch SP. Phylogenetic relationships of Asclepias (Apocynaceae) inferred from non-coding chloroplast DNA sequences Systematic Botany. 36: 1008-1023. DOI: 10.1600/036364411X605010 |
0.371 |
|
2010 |
Taylor JW, Ellison CE. Mushrooms: morphological complexity in the fungi. Proceedings of the National Academy of Sciences of the United States of America. 107: 11655-6. PMID 20571118 DOI: 10.1073/Pnas.1006430107 |
0.528 |
|
2008 |
Binford GJ, Callahan MS, Bodner MR, Rynerson MR, Núñez PB, Ellison CE, Duncan RP. Phylogenetic relationships of Loxosceles and Sicarius spiders are consistent with Western Gondwanan vicariance. Molecular Phylogenetics and Evolution. 49: 538-53. PMID 18755282 DOI: 10.1016/J.Ympev.2008.08.003 |
0.341 |
|
Low-probability matches (unlikely to be authored by this person) |
2023 |
Lawlor MA, Ellison CE. Evolutionary dynamics between transposable elements and their host genomes: mechanisms of suppression and escape. Current Opinion in Genetics & Development. 82: 102092. PMID 37517354 DOI: 10.1016/j.gde.2023.102092 |
0.298 |
|
2020 |
Torosin NS, Anand A, Golla TR, Cao W, Ellison CE. 3D genome evolution and reorganization in the Drosophila melanogaster species group. Plos Genetics. 16: e1009229. PMID 33284803 DOI: 10.1371/journal.pgen.1009229 |
0.297 |
|
2013 |
Ellison CE, Bachtrog D. Dosage compensation via transposable element mediated rewiring of a regulatory network. Science (New York, N.Y.). 342: 846-50. PMID 24233721 DOI: 10.1126/Science.1239552 |
0.295 |
|
2023 |
Leung W, Torosin N, Cao W, Reed LK, Arrigo C, Elgin SCR, Ellison CE. Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae. G3 (Bethesda, Md.). PMID 37611223 DOI: 10.1093/g3journal/jkad191 |
0.285 |
|
2023 |
Leung W, Torosin N, Cao W, Reed LK, Arrigo C, Elgin CRS, Ellison CE. Long-read genome assemblies for the study of chromosome expansion: , , , and . Biorxiv : the Preprint Server For Biology. PMID 37292993 DOI: 10.1101/2023.05.22.541758 |
0.278 |
|
2020 |
Ellison CE, Kagda MS, Cao W. Telomeric TART elements target the piRNA machinery in Drosophila. Plos Biology. 18: e3000689. PMID 33347429 DOI: 10.1371/journal.pbio.3000689 |
0.271 |
|
2021 |
Lawlor MA, Cao W, Ellison CE. A transposon expression burst accompanies the activation of Y-chromosome fertility genes during Drosophila spermatogenesis. Nature Communications. 12: 6854. PMID 34824217 DOI: 10.1038/s41467-021-27136-4 |
0.235 |
|
2020 |
Chen L, Marishta A, Ellison CE, Verzi MP. Identification of transcription factors regulating SARS-CoV-2 entry genes in the intestine. Cellular and Molecular Gastroenterology and Hepatology. PMID 32810597 DOI: 10.1016/J.Jcmgh.2020.08.005 |
0.233 |
|
2022 |
Stanek TJ, Cao W, Mehra RM, Ellison CE. Sex-specific variation in R-loop formation in Drosophila melanogaster. Plos Genetics. 18: e1010268. PMID 35687614 DOI: 10.1371/journal.pgen.1010268 |
0.158 |
|
2021 |
Chen L, Luo S, Dupre A, Vasoya RP, Parthasarathy A, Aita R, Malhotra R, Hur J, Toke NH, Chiles E, Yang M, Cao W, Flores J, Ellison CE, Gao N, et al. The nuclear receptor HNF4 drives a brush border gene program conserved across murine intestine, kidney, and embryonic yolk sac. Nature Communications. 12: 2886. PMID 34001900 DOI: 10.1038/s41467-021-22761-5 |
0.151 |
|
2021 |
Chen L, Cao W, Aita R, Aldea D, Flores J, Gao N, Bonder EM, Ellison CE, Verzi MP. Three-dimensional interactions between enhancers and promoters during intestinal differentiation depend upon HNF4. Cell Reports. 34: 108679. PMID 33503426 DOI: 10.1016/j.celrep.2020.108679 |
0.136 |
|
2008 |
Volt K, Happel L, Needleman BJ, Mikami DJ, Narula VK, Bergman S, Roland J, Ellison CE, Melvin WS, Hazey JW. Transgastric endoscopic peritoneoscopy and bacterial contamination of the abdominal cavity in humans Journal of the American College of Surgeons. 207: S16. DOI: 10.1016/j.jamcollsurg.2008.06.015 |
0.126 |
|
2019 |
Vetter MH, Salani R, Williams TE, Ellison C, Satiani B. The Impact of Burnout on the Obstetrics and Gynecology Workforce. Clinical Obstetrics and Gynecology. PMID 31008731 DOI: 10.1097/GRF.0000000000000452 |
0.119 |
|
2023 |
Nguyen MU, Potgieter S, Huang W, Pfeffer J, Woo S, Zhao C, Lawlor M, Yang R, Halstead A, Dent S, Sáenz JB, Zheng H, Yuan ZF, Sidoli S, Ellison CE, et al. paralogs prevent dsRNA accumulation and interferon signaling to maintain intestinal stem cells. Biorxiv : the Preprint Server For Biology. PMID 37732252 DOI: 10.1101/2023.09.04.556156 |
0.112 |
|
2019 |
Bergamaschi A, Collins F, Ellison C, Ning Y, Guler G, Phillips T, McCarthy E, Wang W, Antoine M, Ku J, Scott A, Lloyd P, Ashworth A, Levy S. Changes in DNA hydroxymethylation for the detection of multiple cancers in plasma cell-free DNA. Journal of Clinical Oncology. 37: 3058-3058. DOI: 10.1200/Jco.2019.37.15_Suppl.3058 |
0.105 |
|
2020 |
Bergamaschi A, Haan D, Ku J, Ning Y, Ellison C, Guler G, Phillips T, McCarthy E, Antoine M, Nguyen A, Scott A, Lloyd P, Ashworth A, Bethel K, Levy S. Effect of detection of epigenomic changes in plasma-derived cell-free DNA on multicancer classification. Journal of Clinical Oncology. 38: 1539-1539. DOI: 10.1200/Jco.2020.38.15_Suppl.1539 |
0.097 |
|
2020 |
Guler G, Haan D, Ning Y, Ku J, McCarthy E, Phillips T, Antoine M, Bergamaschi A, Lloyd P, Scott A, Ellison C, Levy S. Monitoring immunotherapy response in non-small cell lung cancer patients using 5-hydroxymethylcytosine signatures in circulating cell free DNA. Journal of Clinical Oncology. 38: e21505-e21505. DOI: 10.1200/Jco.2020.38.15_Suppl.E21505 |
0.089 |
|
2002 |
Vitellas KM, El-Dieb A, Vaswani KK, Bennett WF, Fromkes J, Ellison C, Bova JG. Using contrast-enhanced MR cholangiography with IV mangafodipir trisodium (Teslascan) to evaluate bile duct leaks after cholecystectomy: a prospective study of 11 patients. Ajr. American Journal of Roentgenology. 179: 409-16. PMID 12130442 DOI: 10.2214/ajr.179.2.1790409 |
0.066 |
|
2021 |
Wiseman JT, Chakedis J, Beal EW, Paredes A, McElhany A, Fang A, Manilchuk A, Ellison C, Van Buren G, Pawlik TM, Schmidt CR, Fisher WE, Dillhoff M. Hemoglobin A1c Is a Predictor of New Insulin Dependence After Partial Pancreatectomy: A Multi-Institutional Analysis. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. PMID 33948858 DOI: 10.1007/s11605-021-05014-0 |
0.046 |
|
2023 |
Haan D, Bergamaschi A, Friedl V, Guler GD, Ning Y, Reggiardo R, Kesling M, Collins M, Gibb B, Hazen K, Bates S, Antoine M, Fraire C, Lopez V, Malta R, ... ... Ellison C, et al. Epigenomic Blood-based Early Detection of Pancreatic Cancer Employing cell free DNA. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 36967102 DOI: 10.1016/j.cgh.2023.03.016 |
0.042 |
|
2016 |
Phieffer L, Hefner JL, Rahmanian A, Swartz J, Ellison CE, Harter R, Lumbley J, Moffatt-Bruce SD. Improving Operating Room Efficiency: First Case On-Time Start Project. Journal For Healthcare Quality : Official Publication of the National Association For Healthcare Quality. PMID 26991350 DOI: 10.1097/JHQ.0000000000000018 |
0.039 |
|
2007 |
Varker KA, Muscarella P, Wall K, Ellison C, Bloomston M. Pancreatectomy for non-pancreatic malignancies results in improved survival after R0 resection. World Journal of Surgical Oncology. 5: 145. PMID 18162131 DOI: 10.1186/1477-7819-5-145 |
0.033 |
|
Hide low-probability matches. |