Morgan Colp - Related publications

Dalhousie University, Halifax, Nova Scotia, Canada 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zhou J, Zhang S, Wang J, Shen H, Ai B, Gao W, Zhang C, Fei Q, Yuan D, Wu Z, Tembrock LR, Li S, Gu C, Liao X. Chloroplast genomes in Populus (Salicaceae): comparisons from an intensively sampled genus reveal dynamic patterns of evolution. Scientific Reports. 11: 9471. PMID 33947883 DOI: 10.1038/s41598-021-88160-4   
2021 Bernard G, Stephens TG, González-Pech RA, Chan CX. Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods. Methods in Molecular Biology (Clifton, N.J.). 2242: 69-76. PMID 33961218 DOI: 10.1007/978-1-0716-1099-2_5   
2021 Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0   
2021 Ping J, Feng P, Li J, Zhang R, Su Y, Wang T. Molecular evolution and SSRs analysis based on the chloroplast genome of . Ecology and Evolution. 11: 4786-4802. PMID 33976848 DOI: 10.1002/ece3.7381   
2021 Weng YM, Francoeur CB, Currie CR, Kavanaugh DH, Schoville SD. A high-quality carabid genome assembly provides insights into beetle genome evolution and cold adaptation. Molecular Ecology Resources. PMID 33938156 DOI: 10.1111/1755-0998.13409   
2021 Engelbrecht J, Duong TA, Prabhu SA, Seedat M, van den Berg N. Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential. Bmc Genomics. 22: 302. PMID 33902447 DOI: 10.1186/s12864-021-07552-y   
2021 Ciobanu D, Clum A, Ahrendt S, Andreopoulos WB, Salamov A, Chan S, Quandt CA, Foster B, Meier-Kolthoff JP, Tang YT, Schwientek P, Benny GL, Smith ME, Bauer D, Deshpande S, et al. A single-cell genomics pipeline for environmental microbial eukaryotes. Iscience. 24: 102290. PMID 33870123 DOI: 10.1016/j.isci.2021.102290   
2021 Fan S, Wang Q, Dai J, Jiang J, Hu X, Subbarao KV. The Whole Genome Sequence of Fusarium redolens strain YP04, a Pathogen that Causes Root Rot of American Ginseng. Phytopathology. PMID 33970029 DOI: 10.1094/PHYTO-03-21-0084-A   
2021 Puri A, Bajaj A, Lal S, Singh Y, Lal R. Phylogenomic Framework for Taxonomic Delineation of spp. and Exploration of Core-Pan Genome. Indian Journal of Microbiology. 61: 180-194. PMID 33927459 DOI: 10.1007/s12088-021-00929-3   
2021 Liu K, Liu S, Chen Y, Liu F, Zhao Y, Chen N. Complete mitochondrial genome of (Mediophyceae, Bacillariophyta). Mitochondrial Dna. Part B, Resources. 6: 1560-1562. PMID 33969218 DOI: 10.1080/23802359.2021.1916409   
2021 Li XD, Pan H, Lu XJ, Wei XY, Shi M, Lu P. Complete chloroplast genome sequencing of Job's tears ( L.): genome structure, comparative analysis, and phylogenetic relationships. Mitochondrial Dna. Part B, Resources. 6: 1399-1405. PMID 33948493 DOI: 10.1080/23802359.2021.1911704   
2021 Keller A, Ankenbrand MJ. Inferring Core Genome Phylogenies for Bacteria. Methods in Molecular Biology (Clifton, N.J.). 2242: 59-68. PMID 33961217 DOI: 10.1007/978-1-0716-1099-2_4   
2021 Han JH. Draft Genome Sequence of sp. Strain CFH1-16, Isolated from the Intestine of the Freshwater Fish Hypomesus nipponensis. Microbiology Resource Announcements. 10. PMID 33986104 DOI: 10.1128/MRA.01389-20   
2021 Berná L, Marquez P, Cabrera A, Greif G, Francia ME, Robello C. Reevaluation of the and genomes reveals misassembly, karyotype differences, and chromosomal rearrangements. Genome Research. 31: 823-833. PMID 33906964 DOI: 10.1101/gr.262832.120   
2021 Calvelage S, Freuling CM, Fooks AR, Höper D, Marston DA, McElhinney L, Rasmussen TB, Finke S, Beer M, Müller T. Full-Genome Sequences and Phylogenetic Analysis of Archived Danish European Bat Lyssavirus 1 (EBLV-1) Emphasize a Higher Genetic Resolution and Spatial Segregation for Sublineage 1a. Viruses. 13. PMID 33917139 DOI: 10.3390/v13040634   
2021 Jiang M, Li Y, Chen H, Wang B, Liu C. Comparative and phylogenetic analysis of the complete chloroplast genome sequences of and . Mitochondrial Dna. Part B, Resources. 6: 1498-1506. PMID 33969207 DOI: 10.1080/23802359.2021.1911700   
2021 Lui LM, Nielsen TN, Arkin AP. A method for achieving complete microbial genomes and improving bins from metagenomics data. Plos Computational Biology. 17: e1008972. PMID 33961626 DOI: 10.1371/journal.pcbi.1008972   
2021 Wang M, Zhang L, Wang Z. Chromosomal-level reference genome of the neotropical tree Jacaranda mimosifolia D. Don. Genome Biology and Evolution. PMID 33944940 DOI: 10.1093/gbe/evab094   
2021 Tian P, Xiao J, Jia Z, Guo F, Wang X, Wang W, Wang J, Huang D, Niu W. Complete mitochondrial DNA sequence of the (Scleractinia, Psammocoridae): mitogenome characterisation and phylogenetic implications. Biodiversity Data Journal. 9: e62395. PMID 33911915 DOI: 10.3897/BDJ.9.e62395   
2021 Zhao J. Characterization of the complete chloroplast genome of . Mitochondrial Dna. Part B, Resources. 6: 252-253. PMID 33553637 DOI: 10.1080/23802359.2020.1861566   
2021 Schneider C, Woehle C, Greve C, D'Haese CA, Wolf M, Hiller M, Janke A, Bálint M, Huettel B. Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola). Gigascience. 10. PMID 34018554 DOI: 10.1093/gigascience/giab035   
2021 Park BK, Ghimire B, Ha YH, Son DC, Kim DK. Complete chloroplast genome of (Ranunculaceae), an endemic species from South Korea. Mitochondrial Dna. Part B, Resources. 6: 1496-1497. PMID 33969206 DOI: 10.1080/23802359.2021.1910080   
2021 Zhao Y, Li Z, Cheng L, Li Y, He F, Wang Y. Characterization of the complete chloroplast genome of a hybrid species × . Mitochondrial Dna. Part B, Resources. 6: 1492-1493. PMID 33969204 DOI: 10.1080/23802359.2020.1848467   
2021 Ghiselli F, Gomes-Dos-Santos A, Adema CM, Lopes-Lima M, Sharbrough J, Boore JL. Molluscan mitochondrial genomes break the rules. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200159. PMID 33813887 DOI: 10.1098/rstb.2020.0159   
2021 Park J, Min J, Kim Y, Chung Y. The Comparative Analyses of Six Complete Chloroplast Genomes of Morphologically Diverse L. (Amaranthaceae) Collected in Korea. International Journal of Genomics. 2021: 6643444. PMID 33996994 DOI: 10.1155/2021/6643444   
2021 Wei X, Li X, Chen T, Chen Z, Jin Y, Malik K, Li C. Complete chloroplast genomes of Achnatherum inebrians and comparative analyses with related species from Poaceae. Febs Open Bio. PMID 33932143 DOI: 10.1002/2211-5463.13170   
2021 Moya-Beltrán A, Beard S, Rojas-Villalobos C, Issotta F, Gallardo Y, Ulloa R, Giaveno A, Degli Esposti M, Johnson DB, Quatrini R. Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions. The Isme Journal. PMID 34007059 DOI: 10.1038/s41396-021-00995-x   
2021 Bhattacharyya T, Sowdhamini R. Genome-wide survey of tyrosine phosphatases in thirty mammalian genomes. Cellular Signalling. 110009. PMID 33848580 DOI: 10.1016/j.cellsig.2021.110009   
2021 Wang M, Li J, Wang P, Liu F, Liu Z, Zhao G, Xu Z, Pei L, Grover CE, Wendel JF, Wang K, Zhang X. Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton. Molecular Biology and Evolution. PMID 33973633 DOI: 10.1093/molbev/msab128   
2021 Yang C, Ma L, Xiao D, Liu X, Jiang X, Ying Z, Lin Y. Chromosome-scale assembly of the Sparassis latifolia genome obtained using long-read and Hi-C sequencing. G3 (Bethesda, Md.). PMID 34021320 DOI: 10.1093/g3journal/jkab173   
2021 Purugganan MD, Jackson SA. Advancing crop genomics from lab to field. Nature Genetics. 53: 595-601. PMID 33958781 DOI: 10.1038/s41588-021-00866-3   
2021 Vogan AA, Ament-Velásquez SL, Bastiaans E, Wallerman O, Saupe SJ, Suh A, Johannesson H. The , a massive transposon carrying meiotic drive genes. Genome Research. PMID 33875482 DOI: 10.1101/gr.267609.120   
2021 Perrin A, Rocha EPC. PanACoTA: a modular tool for massive microbial comparative genomics. Nar Genomics and Bioinformatics. 3: lqaa106. PMID 33575648 DOI: 10.1093/nargab/lqaa106   
2021 Chase MA, Ellegren H, Mugal CF. Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs. Evolution; International Journal of Organic Evolution. PMID 33851440 DOI: 10.1111/evo.14234   
2021 Otero-Bravo A, Sabree ZL. Multiple concurrent and convergent stages of genome reduction in bacterial symbionts across a stink bug family. Scientific Reports. 11: 7731. PMID 33833268 DOI: 10.1038/s41598-021-86574-8   
2021 Miao S, Luo Y, Bautista MAC, Chen T. Complete plastid genome characterization and phylogenetic analysis of Wallich ex Wight (Gentianales: Apocynaceae) from Guangdong, China. Mitochondrial Dna. Part B, Resources. 6: 858-859. PMID 33796657 DOI: 10.1080/23802359.2021.1885319   
2021 Lopes M, Louzada S, Gama-Carvalho M, Chaves R. Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time. International Journal of Molecular Sciences. 22. PMID 33946766 DOI: 10.3390/ijms22094707   
2021 Wu W, Li J, Liu Y, Jiang M, Lan M, Liu C. Peculiarities of the inverted repeats in the complete chloroplast genome of Lindau. Mitochondrial Dna. Part B, Resources. 6: 1440-1447. PMID 33969193 DOI: 10.1080/23802359.2021.1911699   
2021 Wahlster L, Verboon JM, Ludwig LS, Black SC, Luo W, Garg K, Voit RA, Collins RL, Garimella K, Costello M, Chao KR, Goodrich JK, DiTroia SP, O'Donnell-Luria A, Talkowski ME, et al. Familial thrombocytopenia due to a complex structural variant resulting in a WAC-ANKRD26 fusion transcript. The Journal of Experimental Medicine. 218. PMID 33857290 DOI: 10.1084/jem.20210444   
2021 Hao M, Ma W, Dong X, Li X, Cheng F, Wang Y. Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms. Bmc Microbiology. 21: 133. PMID 33932986 DOI: 10.1186/s12866-021-02203-4   
2021 Yu X, Wang P, Li J, Zhao Q, Ji C, Zhu Z, Zhai Y, Qin X, Zhou J, Yu H, Cheng X, Isshiki S, Jahn M, Doyle JJ, Ottosen CO, et al. Whole-Genome Sequence of Synthesized Allopolyploids in Reveals Insights into the Genome Evolution of Allopolyploidization. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 8: 2004222. PMID 33977063 DOI: 10.1002/advs.202004222   
2021 Yan H, Liu Y, Wu Z, Yi Y, Huang X. Phylogenetic relationships and characterization of the complete chloroplast genome of . Mitochondrial Dna. Part B, Resources. 6: 1544-1546. PMID 33969214 DOI: 10.1080/23802359.2021.1915200   
2021 Shen CY, Wang PZ, Xue W, Liu ZH, Zhao JY, Tong XB, Liu C, Wu XF, Mao X, Tian S, Fu C. The complete mitochondrial genome of soft coral Ofwegen and Benayahu, 2012 (Octocorallia: Alcyonacea): the analysis of mitogenome organization and phylogeny. Mitochondrial Dna. Part B, Resources. 6: 1348-1350. PMID 33889745 DOI: 10.1080/23802359.2021.1906174   
2021 McKinlay A, Fultz D, Wang F, Pikaard CS. Targeted Enrichment of rRNA Gene Tandem Arrays for Ultra-Long Sequencing by Selective Restriction Endonuclease Digestion. Frontiers in Plant Science. 12: 656049. PMID 33995452 DOI: 10.3389/fpls.2021.656049   
2021 Fehrer J, Slavíková R, Paštová L, Josefiová J, Mráz P, Chrtek J, Bertrand YJK. Molecular Evolution and Organization of Ribosomal DNA in the Hawkweed Tribe Hieraciinae (Cichorieae, Asteraceae). Frontiers in Plant Science. 12: 647375. PMID 33777082 DOI: 10.3389/fpls.2021.647375   
2021 Cai X, Zhang B, Wang S, Cheng Y, Wang H. Characterization and phylogenetic analysis of the chloroplast genome of var. . Mitochondrial Dna. Part B, Resources. 6: 1490-1491. PMID 33997284 DOI: 10.1080/23802359.2020.1847611   
2021 Xiang L, Zhang L, Hu J. The complete chloroplast genome of , an important economic and medicinal plant endemic in China. Mitochondrial Dna. Part B, Resources. 6: 1025-1027. PMID 33796726 DOI: 10.1080/23802359.2021.1895691   
2021 Roco ÁS, Liehr T, Ruiz-García A, Guzmán K, Bullejos M. Comparative Distribution of Repetitive Sequences in the Karyotypes of and (Anura, Pipidae). Genes. 12. PMID 33919402 DOI: 10.3390/genes12050617   
2021 Ghosh Dasgupta M, Dev SA, Muneera Parveen AB, Sarath P, Sreekumar VB. Draft genome of Korthalsia laciniosa (Griff.) Mart., a climbing rattan elucidates its phylogenetic position. Genomics. 113: 2010-2022. PMID 33862180 DOI: 10.1016/j.ygeno.2021.04.023   
2021 Chen L, Jiang B, Miao Y, Liu Z, Xie S, Ling P, Zhu J. The complete chloroplast genome sequence of (L.). Mitochondrial Dna. Part B, Resources. 6: 1346-1347. PMID 33889744 DOI: 10.1080/23802359.2021.1878950