Daniel G Mulcahy - Publications

National Museum of Natural History, Washington, DC, United States 
biogeography, systematics, taxonomy

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Mulcahy DG, Ibáñez R, Jaramillo CA, Crawford AJ, Ray JM, Gotte SW, Jacobs JF, Wynn AH, Gonzalez-Porter GP, McDiarmid RW, Crombie RI, Zug GR, de Queiroz K. DNA barcoding of the National Museum of Natural History reptile tissue holdings raises concerns about the use of natural history collections and the responsibilities of scientists in the molecular age. Plos One. 17: e0264930. PMID 35245325 DOI: 10.1371/journal.pone.0264930  0.658
2021 Myers EA, Mulcahy DG, Falk B, Johnson K, Carbi M, de Queiroz K. Interspecific Gene Flow and Mitochondrial Genome Capture During the Radiation of Jamaican Anolis Lizards (Squamata; Iguanidae). Systematic Biology. PMID 34735007 DOI: 10.1093/sysbio/syab089  0.79
2020 Myers EA, Mulcahy DG. Six additional mitochondrial genomes for North American nightsnakes (Dipsadidae: ) and a novel gene feature for advanced snakes. Mitochondrial Dna. Part B, Resources. 5: 3056-3058. PMID 33458057 DOI: 10.1080/23802359.2020.1797573  0.728
2020 Derycke EG, Gottscho AD, Gottscho AD, Mulcahy DG, DE Queiroz K. A new cryptic species of fringe-toed lizards from southwestern Arizona with a revised taxonomy of the Uma notata species complex (Squamata: Phrynosomatidae). Zootaxa. 4778: zootaxa.4778.1.3. PMID 33055832 DOI: 10.11646/Zootaxa.4778.1.3  0.792
2020 Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, ... ... Mulcahy DG, et al. The tuatara genome reveals ancient features of amniote evolution. Nature. PMID 32760000 DOI: 10.1038/S41586-020-2561-9  0.381

A new cryptic species of fringe-toed lizards from southwestern Arizona with a revised taxonomy of the Uma notata species complex (Squamata: Phrynosomatidae)

Zootaxa. 4778: 67-100. DOI: 10.11646/zootaxa.4778.1.3 
2020 Bell RC, Mulcahy DG, Gotte SW, Maley AJ, Mendoza C, Steffensen G, Barron II JC, Hyman O, Flint W, Wynn A, Mcdiarmid RW, Mcleod DS. The Type Locality Project: collecting genomic-quality, topotypic vouchers and training the next generation of specimen-based researchers Systematics and Biodiversity. 18: 557-572. DOI: 10.1080/14772000.2020.1769224  0.314
2019 Lee JL, Miller AH, Zug GR, Mulcahy DG. The discovery of Rock Geckos Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) in the Tanintharyi Region, Myanmar with the description of two new species. Zootaxa. 4661: zootaxa.4661.1.2. PMID 31716716 DOI: 10.11646/Zootaxa.4661.1.2  0.624
2019 Grismer LL, Wood PLJ, Grismer JL, Quah ESH, Thy N, Phimmachak S, Sivongxay N, Seateun S, Stuart BL, Siler CB, Mulcahy DG, Anamza T, Brown RM. Geographic structure of genetic variation in the Parachute Gecko Ptychozoon lionotum Annandale, 1905 across Indochina and Sundaland with descriptions of three new species. Zootaxa. 4638: zootaxa.4638.2.1. PMID 31712473 DOI: 10.11646/Zootaxa.4638.2.1  0.547
2018 Mulcahy DG, Lee JL, Miller AH, Chand M, Thura MK, Zug GR. Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data. Zookeys. 85-152. PMID 29780268 DOI: 10.3897/Zookeys.757.24453  0.719
2018 Lee JL, Miller AH, Connette GM, Oo KS, Zug GR, Mulcahy DG. First record of the Malaysian Bridle Snake, Dryocalamus subannulatus (Duméril, Bibron & Duméril, 1854), in Myanmar (Reptilia, Serpentes, Colubridae) Check List. 14: 341-345. DOI: 10.15560/14.2.341  0.582
2017 Mulcahy DG, Lee JL, Miller AH, Zug GR. Troublesome Trimes: Potential cryptic speciation of the Trimeresurus (Popeia) popeiorum complex (Serpentes: Crotalidae) around the Isthmus of Kra (Myanmar and Thailand). Zootaxa. 4347: 301-315. PMID 29245596 DOI: 10.11646/Zootaxa.4347.2.6  0.672
2017 Deichmann JL, Mulcahy DG, Vanthomme H, Tobi E, Wynn AH, Zimkus BM, McDiarmid RW. How many species and under what names? Using DNA barcoding and GenBank data for west Central African amphibian conservation. Plos One. 12: e0187283. PMID 29131846 DOI: 10.1371/Journal.Pone.0187283  0.557
2017 Zúñiga JD, Gostel MR, Mulcahy DG, Barker K, Asia Hill, Sedaghatpour M, Vo SQ, Funk VA, Coddington JA. Data Release: DNA barcodes of plant species collected for the Global Genome Initiative for Gardens Program, National Museum of Natural History, Smithsonian Institution. Phytokeys. 119-122. PMID 29118648 DOI: 10.3897/Phytokeys.88.14607  0.389
2017 Connette GM, Oswald P, Thura MK, LaJeunesse Connette KJ, Grindley ME, Songer M, Zug GR, Mulcahy DG. Rapid forest clearing in a Myanmar proposed national park threatens two newly discovered species of geckos (Gekkonidae: Cyrtodactylus). Plos One. 12: e0174432. PMID 28403189 DOI: 10.1371/Journal.Pone.0174432  0.497
2017 Zug GR, Mulcahy DG, Vindum JV. Resurrection of Bronchocela burmana Blanford, 1878 for the Green Crested Lizard (Squamata, Agamidae) of southern Myanmar. Zookeys. 141-156. PMID 28331413 DOI: 10.3897/Zookeys.657.11600  0.571
2017 Myers EA, Burgoon JL, Ray JM, Martínez-Gómez JE, Matías-Ferrer N, Mulcahy DG, Burbrink FT. Coalescent Species Tree Inference of Coluber and Masticophis Copeia. 105: 640-648. DOI: 10.1643/Ch-16-552  0.813
2016 Mulcahy DG, Macdonald KS, Brady SG, Meyer C, Barker KB, Coddington J. Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA. Peerj. 4: e2528. PMID 27761327 DOI: 10.7717/Peerj.2528  0.309
2016 Droege G, Barker K, Seberg O, Coddington J, Benson E, Berendsohn WG, Bunk B, Butler C, Cawsey EM, Deck J, Döring M, Flemons P, Gemeinholzer B, Güntsch A, Hollowell T, ... ... Mulcahy D, et al. The Global Genome Biodiversity Network (GGBN) Data Standard specification. Database : the Journal of Biological Databases and Curation. 2016. PMID 27694206 DOI: 10.1093/Database/Baw125  0.339
2016 Jezkova T, Jaeger JR, Oláh-Hemmings V, Jones KB, Lara-Resendiz RA, Mulcahy DG, Riddle BR. Range and niche shifts in response to past climate change in the desert horned lizard (Phrynosoma platyrhinos). Ecography. 39: 437-448. PMID 27231410 DOI: 10.1111/Ecog.01464  0.472
2016 Schachat SR, Mulcahy DG, Mendelson JR. Conservation threats and the phylogenetic utility of IUCN Red List rankings in Incilius toads. Conservation Biology : the Journal of the Society For Conservation Biology. 30: 72-81. PMID 26243724 DOI: 10.1111/Cobi.12567  0.755
2016 Lee JL, Thompson A, Mulcahy DG. Relationships between Numbers of Vertebrae, Scale Counts, and Body Size, with Implications for Taxonomy in Nightsnakes (Genus:Hypsiglena) Journal of Herpetology. 50: 616-620. DOI: 10.1670/15-066  0.331
2015 Reeder TW, Townsend TM, Mulcahy DG, Noonan BP, Wood PL, Sites JW, Wiens JJ. Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa. Plos One. 10: e0118199. PMID 25803280 DOI: 10.1371/Journal.Pone.0118199  0.743
2014 Mulcahy DG, Martínez-Gómez JE, Aguirre-León G, Cervantes-Pasqualli JA, Zug GR. Rediscovery of an endemic vertebrate from the remote Islas Revillagigedo in the eastern Pacific Ocean: the Clarión nightsnake lost and found. Plos One. 9: e97682. PMID 24837300 DOI: 10.1371/Journal.Pone.0097682  0.581
2013 Weisrock DW, Macey JR, Matsui M, Mulcahy DG, Papenfuss TJ. Molecular phylogenetic reconstruction of the endemic Asian salamander family Hynobiidae (Amphibia, Caudata). Zootaxa. 3626: 77-93. PMID 26176127 DOI: 10.11646/Zootaxa.3626.1.3  0.548
2012 Wiens JJ, Hutter CR, Mulcahy DG, Noonan BP, Townsend TM, Sites JW, Reeder TW. Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species. Biology Letters. 8: 1043-6. PMID 22993238 DOI: 10.1098/Rsbl.2012.0703  0.787
2012 Mulcahy DG, Noonan BP, Moss T, Townsend TM, Reeder TW, Sites JW, Wiens JJ. Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles. Molecular Phylogenetics and Evolution. 65: 974-91. PMID 22982760 DOI: 10.1016/J.Ympev.2012.08.018  0.676
2012 Mendelson JR, Mulcahy DG, Snell S, Acevedo ME, Campbell JA. A new golden toad (Bufonidae: Incilius) from northwestern Guatemala and Chiapas, Mexico Journal of Herpetology. 46: 473-479. DOI: 10.1670/11-140  0.741
2012 Avila-Pires TCS, Mulcahy DG, Werneck FP, Sites JW. Phylogeography of the teiid lizard kentropyx calcarata and the sphaerodactylid Gonatodes humeralis (reptilia: Squamata): Testing a geological scenario for the lower Amazon-Tocantins Basins, Amazonia, Brazil Herpetologica. 68: 272-287. DOI: 10.1655/Herpetologica-D-11-00021.1  0.681
2011 Heideman NJ, Mulcahy DG, Sites JW, Hendricks MG, Daniels SR. Cryptic diversity and morphological convergence in threatened species of fossorial skinks in the genus Scelotes (Squamata: Scincidae) from the Western Cape Coast of South Africa: implications for species boundaries, digit reduction and conservation. Molecular Phylogenetics and Evolution. 61: 823-33. PMID 21907812 DOI: 10.1016/J.Ympev.2011.08.021  0.567
2011 Swei A, Rowley JJ, Rödder D, Diesmos ML, Diesmos AC, Briggs CJ, Brown R, Cao TT, Cheng TL, Chong RA, Han B, Hero JM, Hoang HD, Kusrini MD, Le DT, ... ... Mulcahy DG, et al. Is chytridiomycosis an emerging infectious disease in Asia? Plos One. 6: e23179. PMID 21887238 DOI: 10.1371/Journal.Pone.0023179  0.619
2011 Townsend TM, Mulcahy DG, Noonan BP, Sites JW, Kuczynski CA, Wiens JJ, Reeder TW. Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation. Molecular Phylogenetics and Evolution. 61: 363-80. PMID 21787873 DOI: 10.1016/J.Ympev.2011.07.008  0.777
2011 Mulcahy DG, Beckstead TH, Sites JW. Molecular Systematics of the Leptodeirini (Colubroidea: Dipsadidae) Revisited: Species-tree Analyses and Multi-locus Data Copeia. 2011: 407-417. DOI: 10.1643/Ch-10-058  0.538
2011 MENDELSON III JR, MULCAHY DG, WILLIAMS TS, SITES JR. JW. A phylogeny and evolutionary natural history of mesoamerican toads (Anura: Bufonidae: Incilius) based on morphology, life history, and molecular data Zootaxa. 3138: 1. DOI: 10.11646/Zootaxa.3138.1.1  0.588
2010 Wiens JJ, Kuczynski CA, Townsend T, Reeder TW, Mulcahy DG, Sites JW. Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa. Systematic Biology. 59: 674-88. PMID 20930035 DOI: 10.1093/Sysbio/Syq048  0.726
2010 Reyes-Velasco J, Mulcahy DG. Additional taxonomic remarks on the genus pseudoleptodeira (Serpentes: Colubridae) and the phylogenetic placement of "p. uribei" Herpetologica. 66: 99-110. DOI: 10.1655/09-019.1  0.378
2010 MENDELSON III JR, MULCAHY DG. A new species of toad (Bufonidae: Incilius) from central Panama Zootaxa. 2396: 61. DOI: 10.11646/Zootaxa.2396.1.5  0.62
2009 Mulcahy DG, Macey JR. Vicariance and dispersal form a ring distribution in nightsnakes around the Gulf of California. Molecular Phylogenetics and Evolution. 53: 537-46. PMID 19501659 DOI: 10.1016/J.Ympev.2009.05.037  0.451
2008 Wiens JJ, Kuczynski CA, Smith SA, Mulcahy DG, Sites JW, Townsend TM, Reeder TW. Branch lengths, support, and congruence: testing the phylogenomic approach with 20 nuclear loci in snakes. Systematic Biology. 57: 420-31. PMID 18570036 DOI: 10.1080/10635150802166053  0.716
2008 Mulcahy DG. Phylogeography and species boundaries of the western North American Nightsnake (Hypsiglena torquata): revisiting the subspecies concept. Molecular Phylogenetics and Evolution. 46: 1095-115. PMID 18226930 DOI: 10.1016/J.Ympev.2007.12.012  0.608
2007 Leaché AD, Mulcahy DG. Phylogeny, divergence times and species limits of spiny lizards (Sceloporus magister species group) in western North American deserts and Baja California. Molecular Ecology. 16: 5216-33. PMID 17944851 DOI: 10.1111/J.1365-294X.2007.03556.X  0.619
2007 MULCAHY DG. Molecular systematics of neotropical cat-eyed snakes: a test of the monophyly of Leptodeirini (Colubridae: Dipsadinae) with implications for character evolution and biogeography Biological Journal of the Linnean Society. 92: 483-500. DOI: 10.1111/J.1095-8312.2007.00855.X  0.484
2006 Mulcahy DG, Spaulding AW, Mendelson JR, Brodie ED. Phylogeography of the flat-tailed horned lizard (Phrynosoma mcallii) and systematics of the P. mcallii-platyrhinos mtDNA complex. Molecular Ecology. 15: 1807-26. PMID 16689900 DOI: 10.1111/J.1365-294X.2006.02892.X  0.777
2006 Mulcahy DG, Morrill BH, Mendelson JR. Historical biogeography of lowland species of toads (Bufo) across the Trans-Mexican Neovolcanic Belt and the Isthmus of Tehuantepec Journal of Biogeography. 33: 1889-1904. DOI: 10.1111/J.1365-2699.2006.01546.X  0.722
2005 Brodie ED, Feldman CR, Hanifin CT, Motychak JE, Mulcahy DG, Williams BL, Brodie ED. Parallel arms races between garter snakes and newts involving tetrodotoxin as the phenotypic interface of coevolution. Journal of Chemical Ecology. 31: 343-56. PMID 15856788 DOI: 10.1007/S10886-005-1345-X  0.765
2004 Lips KR, Mendelson JR, Muñoz-Alonso A, Canseco-Márquez L, Mulcahy DG. Amphibian population declines in montane southern Mexico: Resurveys of historical localities Biological Conservation. 119: 555-564. DOI: 10.1016/J.Biocon.2004.01.017  0.671
2003 Mulcahy DG, Archibald MA. Geographic Variation in the Baja California Nightsnake (Eridiphas slevini), with Comments on Taxonomy and Diet Journal of Herpetology. 37: 566-571. DOI: 10.1670/203-02N  0.528
2001 Mulcahy DG, Mendelson JR. Phylogeography and speciation of the morphologically variable, widespread species Bufo valliceps, based on molecular evidence from mtDNA. Molecular Phylogenetics and Evolution. 17: 173-89. PMID 11083932 DOI: 10.1006/Mpev.2000.0827  0.773
1999 Rodríguez-Robles JA, Mulcahy DG, Greene HW. Feeding ecology of the desert nightsnake, Hypsiglena torquata (Colubridae) Copeia. 93-100. DOI: 10.2307/1447389  0.331
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