Kevin J. Peterson - Publications

Biological Sciences Dartmouth College, Hanover, NH, United States 

72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Peterson KJ, Beavan A, Chabot PJ, McPeek MA, Pisani D, Fromm B, Simakov O. microRNAs as Indicators into the Causes and Consequences of Whole Genome Duplication Events. Molecular Biology and Evolution. PMID 34865078 DOI: 10.1093/molbev/msab344  0.751
2021 Fromm B, Høye E, Domanska D, Zhong X, Aparicio-Puerta E, Ovchinnikov V, Umu SU, Chabot PJ, Kang W, Aslanzadeh M, Tarbier M, Mármol-Sánchez E, Urgese G, Johansen M, Hovig E, ... ... Peterson KJ, et al. MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Nucleic Acids Research. PMID 34850127 DOI: 10.1093/nar/gkab1101  0.73
2020 Fromm B, Keller A, Yang X, Friedlander MR, Peterson KJ, Griffiths-Jones S. Quo vadis microRNAs? Trends in Genetics : Tig. 36: 461-463. PMID 32544447 DOI: 10.1016/J.Tig.2020.03.007  0.728
2019 Ramaiah M, Tan K, Plank TM, Song HW, Dumdie JN, Jones S, Shum EY, Sheridan SD, Peterson KJ, Gromoll J, Haggarty SJ, Cook-Andersen H, Wilkinson MF. Response to: X-linked miR-506 family miRNAs promote FMRP expression in mouse spermatogonia. Embo Reports. e49354. PMID 31808609 DOI: 10.15252/Embr.201949354  0.388
2019 Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Research. PMID 31642479 DOI: 10.1093/nar/gkz1016  0.689
2019 Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Research. PMID 31598695 DOI: 10.1093/Nar/Gkz885  0.763
2018 Ramaiah M, Tan K, Plank TM, Song HW, Dumdie JN, Jones S, Shum EY, Sheridan SD, Peterson KJ, Gromoll J, Haggarty SJ, Cook-Andersen H, Wilkinson MF. A microRNA cluster in the Fragile-X region expressed during spermatogenesis targets FMR1. Embo Reports. PMID 30573526 DOI: 10.15252/Embr.201846566  0.468
2018 Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K. Unicellular Origin of the Animal MicroRNA Machinery. Current Biology : Cb. PMID 30318349 DOI: 10.1016/J.Cub.2018.08.018  0.764
2018 Bhambri A, Dhaunta N, Patel SS, Hardikar M, Bhatt A, Srikakulam N, Shridhar S, Vellarikkal S, Pandey R, Jayarajan R, Verma A, Kumar V, Gautam P, Khanna Y, Khan JA, ... ... Peterson KJ, et al. Large scale changes in the transcriptome of Eisenia fetida during regeneration. Plos One. 13: e0204234. PMID 30260966 DOI: 10.1371/Journal.Pone.0204234  0.72
2018 Deline B, Greenwood JM, Clark JW, Puttick MN, Peterson KJ, Donoghue PCJ. Evolution of metazoan morphological disparity. Proceedings of the National Academy of Sciences of the United States of America. PMID 30181261 DOI: 10.1073/Pnas.1810575115  0.449
2018 Tarver JE, Taylor RS, Puttick MN, Lloyd GT, Pett W, Fromm B, Schirrmeister BE, Pisani D, Peterson KJ, Donoghue PCJ. Well-annotated microRNAomes do not evidence pervasive miRNA loss. Genome Biology and Evolution. PMID 29788279 DOI: 10.1093/Gbe/Evy096  0.741
2018 Halushka MK, Fromm B, Peterson KJ, McCall MN. Big Strides in Cellular MicroRNA Expression. Trends in Genetics : Tig. PMID 29361313 DOI: 10.1016/J.Tig.2017.12.015  0.722
2016 Shum EY, Jones SH, Shao A, Dumdie J, Krause MD, Chan WK, Lou CH, Espinoza JL, Song HW, Phan MH, Ramaiah M, Huang L, McCarrey JR, Peterson KJ, De Rooij DG, et al. The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay. Cell. PMID 27040500 DOI: 10.1016/J.Cell.2016.02.046  0.338
2016 Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D. The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference. Genome Biology and Evolution. PMID 26733575 DOI: 10.1093/Gbe/Evv261  0.358
2016 Peterson KJ, Eernisse DJ. The phylogeny, evolutionary developmental biology, and paleobiology of the Deuterostomia: 25 years of new techniques, new discoveries, and new ideas Organisms Diversity and Evolution. 1-18. DOI: 10.1007/S13127-016-0270-X  0.333
2015 Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ. A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Annual Review of Genetics. PMID 26473382 DOI: 10.1146/Annurev-Genet-120213-092023  0.746
2014 Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ. Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles. Evolution & Development. 16: 189-96. PMID 24798503 DOI: 10.1111/Ede.12081  0.54
2013 Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ. miRNAs: small genes with big potential in metazoan phylogenetics. Molecular Biology and Evolution. 30: 2369-82. PMID 23913097 DOI: 10.1093/Molbev/Mst133  0.819
2013 Peterson KJ, Su YH, Arnone MI, Swalla B, King BL. MicroRNAs support the monophyly of enteropneust hemichordates. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 320: 368-74. PMID 23703796 DOI: 10.1002/Jez.B.22510  0.739
2013 Hill MS, Hill AL, Lopez J, Peterson KJ, Pomponi S, Diaz MC, Thacker RW, Adamska M, Boury-Esnault N, Cárdenas P, Chaves-Fonnegra A, Danka E, De Laine BO, Formica D, Hajdu E, et al. Reconstruction of family-level phylogenetic relationships within Demospongiae (Porifera) using nuclear encoded housekeeping genes. Plos One. 8: e50437. PMID 23372644 DOI: 10.1371/Journal.Pone.0050437  0.32
2013 Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ. The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 320: 84-93. PMID 23349041 DOI: 10.1002/Jez.B.22485  0.484
2013 Laflamme M, Darroch SAF, Tweedt SM, Peterson KJ, Erwin DH. The end of the Ediacara biota: Extinction, biotic replacement, or Cheshire Cat? Gondwana Research. 23: 558-573. DOI: 10.1016/J.Gr.2012.11.004  0.313
2012 Tarver JE, Donoghue PC, Peterson KJ. Do miRNAs have a deep evolutionary history? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 857-66. PMID 22847169 DOI: 10.1002/Bies.201200055  0.48
2012 Vinther J, Sperling EA, Briggs DE, Peterson KJ. A molecular palaeobiological hypothesis for the origin of aplacophoran molluscs and their derivation from chiton-like ancestors. Proceedings. Biological Sciences / the Royal Society. 279: 1259-68. PMID 21976685 DOI: 10.1098/Rspb.2011.1773  0.698
2012 Pisani D, Feuda R, Peterson KJ, Smith AB. Resolving phylogenetic signal from noise when divergence is rapid: a new look at the old problem of echinoderm class relationships. Molecular Phylogenetics and Evolution. 62: 27-34. PMID 21945533 DOI: 10.1016/J.Ympev.2011.08.028  0.77
2012 Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ. MicroRNAs support a turtle + lizard clade. Biology Letters. 8: 104-7. PMID 21775315 DOI: 10.1098/Rsbl.2011.0477  0.826
2011 Erwin DH, Laflamme M, Tweedt SM, Sperling EA, Pisani D, Peterson KJ. The Cambrian conundrum: early divergence and later ecological success in the early history of animals. Science (New York, N.Y.). 334: 1091-7. PMID 22116879 DOI: 10.1126/Science.1206375  0.35
2011 Campbell LI, Rota-Stabelli O, Edgecombe GD, Marchioro T, Longhorn SJ, Telford MJ, Philippe H, Rebecchi L, Peterson KJ, Pisani D. MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda. Proceedings of the National Academy of Sciences of the United States of America. 108: 15920-4. PMID 21896763 DOI: 10.1073/Pnas.1105499108  0.505
2011 Sperling EA, Pisani D, Peterson KJ. Molecular paleobiological insights into the origin of the Brachiopoda. Evolution & Development. 13: 290-303. PMID 21535467 DOI: 10.1111/J.1525-142X.2011.00480.X  0.442
2011 Wiegmann BM, Trautwein MD, Winkler IS, Barr NB, Kim JW, Lambkin C, Bertone MA, Cassel BK, Bayless KM, Heimberg AM, Wheeler BM, Peterson KJ, Pape T, Sinclair BJ, Skevington JH, et al. Episodic radiations in the fly tree of life. Proceedings of the National Academy of Sciences of the United States of America. 108: 5690-5. PMID 21402926 DOI: 10.1073/Pnas.1012675108  0.788
2011 Philippe H, Brinkmann H, Copley RR, Moroz LL, Nakano H, Poustka AJ, Wallberg A, Peterson KJ, Telford MJ. Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature. 470: 255-8. PMID 21307940 DOI: 10.1038/Nature09676  0.507
2011 Campo-Paysaa F, Sémon M, Cameron RA, Peterson KJ, Schubert M. microRNA complements in deuterostomes: origin and evolution of microRNAs. Evolution & Development. 13: 15-27. PMID 21210939 DOI: 10.1111/J.1525-142X.2010.00452.X  0.507
2011 Sperling EA, Peterson KJ, Laflamme M. Rangeomorphs, Thectardis (Porifera?) and dissolved organic carbon in the Ediacaran oceans. Geobiology. 9: 24-33. PMID 21044251 DOI: 10.1111/J.1472-4669.2010.00259.X  0.311
2011 Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ. A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata. Proceedings. Biological Sciences / the Royal Society. 278: 298-306. PMID 20702459 DOI: 10.1098/Rspb.2010.0590  0.438
2011 Anderson BM, Pisani D, Miller AI, Peterson KJ. The environmental affinities of marine higher taxa and possible biases in their first appearances in the fossil record Geology. 39: 971-974. DOI: 10.1130/G32413.1  0.323
2010 Jackson DJ, Meyer NP, Seaver E, Pang K, McDougall C, Moy VN, Gordon K, Degnan BM, Martindale MQ, Burke RD, Peterson KJ. Developmental expression of COE across the Metazoa supports a conserved role in neuronal cell-type specification and mesodermal development. Development Genes and Evolution. 220: 221-34. PMID 21069538 DOI: 10.1007/S00427-010-0343-3  0.405
2010 Heimberg AM, Cowper-Sal-lari R, Sémon M, Donoghue PC, Peterson KJ. microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate. Proceedings of the National Academy of Sciences of the United States of America. 107: 19379-83. PMID 20959416 DOI: 10.1073/Pnas.1010350107  0.822
2010 Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, ... ... Peterson KJ, et al. The dynamic genome of Hydra. Nature. 464: 592-6. PMID 20228792 DOI: 10.1038/Nature08830  0.794
2010 Sperling EA, Robinson JM, Pisani D, Peterson KJ. Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules. Geobiology. 8: 24-36. PMID 19929965 DOI: 10.1111/J.1472-4669.2009.00225.X  0.432
2009 Sperling EA, Vinther J, Moy VN, Wheeler BM, Sémon M, Briggs DE, Peterson KJ. MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record. Proceedings. Biological Sciences / the Royal Society. 276: 4315-22. PMID 19755470 DOI: 10.1098/Rspb.2009.1340  0.743
2009 Sperling EA, Peterson KJ, Pisani D. Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Molecular Biology and Evolution. 26: 2261-74. PMID 19597161 DOI: 10.1093/Molbev/Msp148  0.385
2009 Peterson KJ, Dietrich MR, McPeek MA. MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 736-47. PMID 19472371 DOI: 10.1002/Bies.200900033  0.498
2009 Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ. The deep evolution of metazoan microRNAs. Evolution & Development. 11: 50-68. PMID 19196333 DOI: 10.1111/J.1525-142X.2008.00302.X  0.824
2009 Campo-Paysaa F, Sémon M, Peterson K, Schubert M. 01-P014 Complement and genomic distribution of miRNAs in deuterostomes: Conservation and diversification of the miRNA regulatory network Mechanisms of Development. 126. DOI: 10.1016/J.Mod.2009.06.015  0.484
2008 Heimberg AM, Sempere LF, Moy VN, Donoghue PC, Peterson KJ. MicroRNAs and the advent of vertebrate morphological complexity. Proceedings of the National Academy of Sciences of the United States of America. 105: 2946-50. PMID 18287013 DOI: 10.1073/Pnas.0712259105  0.83
2008 Peterson KJ, Cotton JA, Gehling JG, Pisani D. The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 1435-43. PMID 18192191 DOI: 10.1098/Rstb.2007.2233  0.304
2007 Sempere LF, Martinez P, Cole C, Baguñà J, Peterson KJ. Phylogenetic distribution of microRNAs supports the basal position of acoel flatworms and the polyphyly of Platyhelminthes Evolution and Development. 9: 409-415. PMID 17845513 DOI: 10.1111/J.1525-142X.2007.00180.X  0.64
2007 Peterson KJ, Sperling EA. Poriferan ANTP genes: primitively simple or secondarily reduced? Evolution & Development. 9: 405-8. PMID 17845512 DOI: 10.1111/J.1525-142X.2007.00179.X  0.328
2007 Dunn EF, Moy VN, Angerer LM, Angerer RC, Morris RL, Peterson KJ. Molecular paleoecology: using gene regulatory analysis to address the origins of complex life cycles in the late Precambrian. Evolution & Development. 9: 10-24. PMID 17227363 DOI: 10.1111/J.1525-142X.2006.00134.X  0.669
2007 Sperling EA, Pisani D, Peterson KJ. Poriferan paraphyly and its implications for Precambrian palaeobiology Geological Society Special Publication. 286: 355-368. DOI: 10.1144/Sp286.25  0.347
2006 Bottjer DJ, Davidson EH, Peterson KJ, Cameron RA. Paleogenomics of echinoderms. Science (New York, N.Y.). 314: 956-60. PMID 17095693 DOI: 10.1126/Science.1132310  0.601
2006 Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Peterson K, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609  0.718
2006 Arnone MI, Rizzo F, Annunciata R, Cameron RA, Peterson KJ, Martínez P. Genetic organization and embryonic expression of the ParaHox genes in the sea urchin S. purpuratus: insights into the relationship between clustering and colinearity. Developmental Biology. 300: 63-73. PMID 16959236 DOI: 10.1016/J.Ydbio.2006.07.037  0.532
2006 Sempere LF, Cole CN, McPeek MA, Peterson KJ. The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 306: 575-88. PMID 16838302 DOI: 10.1002/Jez.B.21118  0.519
2006 Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L. Unusual gene order and organization of the sea urchin hox cluster. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 306: 45-58. PMID 16116652 DOI: 10.1002/Jez.B.21070  0.628
2005 Peterson KJ, Butterfield NJ. Origin of the Eumetazoa: testing ecological predictions of molecular clocks against the Proterozoic fossil record. Proceedings of the National Academy of Sciences of the United States of America. 102: 9547-52. PMID 15983372 DOI: 10.1073/Pnas.0503660102  0.368
2005 Higgs HN, Peterson KJ. Phylogenetic analysis of the formin homology 2 domain. Molecular Biology of the Cell. 16: 1-13. PMID 15509653 DOI: 10.1091/Mbc.E04-07-0565  0.352
2005 Peterson KJ, McPeek MA, Evans DAD. Tempo and mode of early animal evolution: Inferences from rocks, Hox, and molecular clocks Paleobiology. 31: 36-55. DOI: 10.1666/0094-8373(2005)031[0036:Tamoea]2.0.Co;2  0.36
2005 Peterson KJ. Macroevolutionary interplay between planktic larvae and benthic predators Geology. 33: 929-932. DOI: 10.1130/G21697.1  0.307
2004 Peterson KJ. Isolation of Hox and Parahox genes in the hemichordate Ptychodera flava and the evolution of deuterostome Hox genes. Molecular Phylogenetics and Evolution. 31: 1208-15. PMID 15120410 DOI: 10.1016/J.Ympev.2003.10.007  0.369
2004 Peterson KJ, Lyons JB, Nowak KS, Takacs CM, Wargo MJ, McPeek MA. Estimating metazoan divergence times with a molecular clock. Proceedings of the National Academy of Sciences of the United States of America. 101: 6536-41. PMID 15084738 DOI: 10.1073/Pnas.0401670101  0.412
2004 Takacs CM, Amore G, Oliveri P, Poustka AJ, Wang D, Burke RD, Peterson KJ. Expression of an NK2 homeodomain gene in the apical ectoderm defines a new territory in the early sea urchin embryo. Developmental Biology. 269: 152-64. PMID 15081364 DOI: 10.1016/J.Ydbio.2004.01.023  0.597
2003 Peterson KJ, Waggoner B, Hagadorn JW. A fungal analog for newfoundland ediacaran fossils? Integrative and Comparative Biology. 43: 127-36. PMID 21680417 DOI: 10.1093/Icb/43.1.127  0.332
2003 Amore G, Yavrouian RG, Peterson KJ, Ransick A, McClay DR, Davidson EH. Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks. Developmental Biology. 261: 55-81. PMID 12941621 DOI: 10.1016/S0012-1606(03)00278-1  0.51
2002 Takacs CM, Moy VN, Peterson KJ. Testing putative hemichordate homologues of the chordate dorsal nervous system and endostyle: expression of NK2.1 (TTF-1) in the acorn worm Ptychodera flava (Hemichordata, Ptychoderidae). Evolution & Development. 4: 405-17. PMID 12492141 DOI: 10.1046/J.1525-142X.2002.02029.X  0.318
2002 Smith AB, Peterson KJ. Dating the Time of Origin of Major Clades: Molecular Clocks and the Fossil Record Annual Review of Earth and Planetary Sciences. 30: 65-88. DOI: 10.1146/Annurev.Earth.30.091201.140057  0.345
2001 Peterson KJ, Eernisse DJ. Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences. Evolution & Development. 3: 170-205. PMID 11440251 DOI: 10.1046/J.1525-142X.2001.003003170.X  0.387
2000 Chen JY, Oliveri P, Li CW, Zhou GQ, Gao F, Hagadorn JW, Peterson KJ, Davidson EH. Precambrian animal diversity: putative phosphatized embryos from the Doushantuo Formation of China. Proceedings of the National Academy of Sciences of the United States of America. 97: 4457-62. PMID 10781044 DOI: 10.1073/Pnas.97.9.4457  0.646
1999 Ponce MR, Micol JL, Peterson KJ, Davidson EH. Molecular characterization and phylogenetic analysis of SpBMP5-7, a new member of the TGF-beta superfamily expressed in sea urchin embryos. Molecular Biology and Evolution. 16: 634-45. PMID 10335657 DOI: 10.1093/Oxfordjournals.Molbev.A026146  0.476
1998 CAMERON RA, PETERSON KJ, DAVIDSON EH. Developmental Gene Regulation and the Evolution of Large Animal Body Plans American Zoologist. 38: 609-620. DOI: 10.1093/Icb/38.4.609  0.516
1995 Davidson EH, Peterson KJ, Cameron RA. Origin of bilaterian body plans: evolution of developmental regulatory mechanisms. Science (New York, N.Y.). 270: 1319-25. PMID 7481819 DOI: 10.1126/Science.270.5240.1319  0.527
1995 PETERSON KJ. A phylogenetic test of the calcichordate scenario Lethaia. 28: 25-38. DOI: 10.1111/J.1502-3931.1995.Tb01591.X  0.313
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