| Year |
Citation |
Score |
| 2023 |
Gu X, Wang M, Zhang XO. TE-TSS: an integrated data resource of human and mouse transposable element (TE)-derived transcription start site (TSS). Nucleic Acids Research. PMID 37956335 DOI: 10.1093/nar/gkad1048 |
0.423 |
|
| 2023 |
Cao J, Yu T, Xu B, Hu Z, Zhang XO, Theurkauf WE, Weng Z. Epigenetic and chromosomal features drive transposon insertion in Drosophila melanogaster. Nucleic Acids Research. PMID 36762470 DOI: 10.1093/nar/gkad054 |
0.559 |
|
| 2022 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, ... ... Zhang XO, et al. Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. PMID 35474001 DOI: 10.1038/s41586-021-04226-3 |
0.626 |
|
| 2021 |
Moore JE, Zhang XO, Elhajjajy SI, Fan K, Pratt HE, Reese F, Mortazavi A, Weng Z. Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types. Genome Research. PMID 34949670 DOI: 10.1101/gr.275723.121 |
0.59 |
|
| 2021 |
Jiang T, Zhang XO, Weng Z, Xue W. Deletion and replacement of long genomic sequences using prime editing. Nature Biotechnology. PMID 34650270 DOI: 10.1038/s41587-021-01026-y |
0.57 |
|
| 2021 |
Fan K, Moore JE, Zhang XO, Weng Z. Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes. Nucleic Acids Research. PMID 33978759 DOI: 10.1093/nar/gkab345 |
0.573 |
|
| 2021 |
Zhang XO, Pratt H, Weng Z. Investigating the Potential Roles of SINEs in the Human Genome. Annual Review of Genomics and Human Genetics. PMID 33792357 DOI: 10.1146/annurev-genom-111620-100736 |
0.629 |
|
| 2020 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... Zhang XO, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4 |
0.697 |
|
| 2020 |
Smith JL, Rodríguez TC, Mou H, Kwan SY, Pratt H, Zhang XO, Cao Y, Liang S, Ozata DM, Yu T, Yin Q, Hazeltine M, Weng Z, Sontheimer EJ, Xue W. YAP1 withdrawal in hepatoblastoma drives therapeutic differentiation of tumor cells to functional hepatocyte-like cells. Hepatology (Baltimore, Md.). PMID 32452550 DOI: 10.1002/Hep.31389 |
0.453 |
|
| 2020 |
Jiang T, Henderson JM, Coote K, Cheng Y, Valley HC, Zhang XO, Wang Q, Rhym LH, Cao Y, Newby GA, Bihler H, Mense M, Weng Z, Anderson DG, McCaffrey AP, et al. Chemical modifications of adenine base editor mRNA and guide RNA expand its application scope. Nature Communications. 11: 1979. PMID 32332735 DOI: 10.1038/S41467-020-15892-8 |
0.574 |
|
| 2020 |
Zhang P, Zhang XO, Jiang T, Cai L, Huang X, Liu Q, Li D, Lu A, Liu Y, Xue W, Zhang P, Weng Z. Comprehensive identification of alternative back-splicing in human tissue transcriptomes. Nucleic Acids Research. PMID 31974555 DOI: 10.1093/Nar/Gkaa005 |
0.562 |
|
| 2019 |
Zhang XO, Gingeras TR, Weng Z. Genome-wide analysis of polymerase III-transcribed elements suggests cell-type-specific enhancer function. Genome Research. PMID 31413151 DOI: 10.1101/Gr.249789.119 |
0.632 |
|
| 2019 |
Kwan SY, Sheel A, Song CQ, Zhang XO, Jiang T, Dang H, Cao Y, Ozata DM, Mou H, Yin H, Weng Z, Wang XW, Xue W. Depletion of TRRAP induces p53-independent senescence in liver cancer by downregulating mitotic genes. Hepatology (Baltimore, Md.). PMID 31188495 DOI: 10.1002/Hep.30807 |
0.506 |
|
| 2018 |
Zhang G, Tu S, Yu T, Zhang XO, Parhad SS, Weng Z, Theurkauf WE. Co-dependent Assembly of Drosophila piRNA Precursor Complexes and piRNA Cluster Heterochromatin. Cell Reports. 24: 3413-3422.e4. PMID 30257203 DOI: 10.1016/J.Celrep.2018.08.081 |
0.523 |
|
| 2018 |
Zhang XO, Fu Y, Mou H, Xue W, Weng Z. The temporal landscape of recursive splicing during Pol II transcription elongation in human cells. Plos Genetics. 14: e1007579. PMID 30148885 DOI: 10.1371/Journal.Pgen.1007579 |
0.556 |
|
| 2018 |
Huang L, Liu J, Zhang XO, Sibley K, Najjar SM, Lee MM, Wu JQ. Inhibition of protein arginine methyltransferase 5 enhances hepatic mitochondrial biogenesis. The Journal of Biological Chemistry. PMID 29773653 DOI: 10.1074/Jbc.Ra118.002377 |
0.321 |
|
| 2018 |
Mou H, Smith J, Peng L, Yin H, Moore J, Zhang X, Song C, Sheel A, Wu Q, Ozata D, Li Y, Anderson D, Emerson C, Moore M, Weng Z, et al. Abstract 3374: CRISPR/Cas9 mediated genome editing induces exon skipping by alternative splicing or exon deletion Cancer Research. 78: 3374-3374. DOI: 10.1158/1538-7445.Am2018-3374 |
0.604 |
|
| 2017 |
Mou H, Smith JL, Peng L, Yin H, Moore J, Zhang XO, Song CQ, Sheel A, Wu Q, Ozata DM, Li Y, Anderson DG, Emerson CP, Sontheimer EJ, Moore MJ, et al. CRISPR/Cas9-mediated genome editing induces exon skipping by alternative splicing or exon deletion. Genome Biology. 18: 108. PMID 28615073 DOI: 10.1186/S13059-017-1237-8 |
0.603 |
|
| 2016 |
Zhang XO, Dong R, Zhang Y, Zhang JL, Luo Z, Zhang J, Chen LL, Yang L. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs. Genome Research. PMID 27365365 DOI: 10.1101/Gr.202895.115 |
0.493 |
|
| 2015 |
Wang D, Cai C, Dong X, Yu QC, Zhang XO, Yang L, Zeng YA. Identification of multipotent mammary stem cells by protein C receptor expression. Nature. 517: 81-4. PMID 25327250 DOI: 10.1038/Nature13851 |
0.337 |
|
| 2014 |
Zhang XO, Yin QF, Chen LL, Yang L. Gene expression profiling of non-polyadenylated RNA-seq across species. Genomics Data. 2: 237-41. PMID 26484100 DOI: 10.1016/J.Gdata.2014.07.005 |
0.495 |
|
| 2014 |
Zhang XO, Wang HB, Zhang Y, Lu X, Chen LL, Yang L. Complementary sequence-mediated exon circularization. Cell. 159: 134-47. PMID 25242744 DOI: 10.1016/J.Cell.2014.09.001 |
0.543 |
|
| 2014 |
Zhang XO, Yin QF, Wang HB, Zhang Y, Chen T, Zheng P, Lu X, Chen LL, Yang L. Species-specific alternative splicing leads to unique expression of sno-lncRNAs. Bmc Genomics. 15: 287. PMID 24734784 DOI: 10.1186/1471-2164-15-287 |
0.531 |
|
| 2014 |
Xiang JF, Yin QF, Chen T, Zhang Y, Zhang XO, Wu Z, Zhang S, Wang HB, Ge J, Lu X, Yang L, Chen LL. Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus. Cell Research. 24: 513-31. PMID 24662484 DOI: 10.1038/Cr.2014.35 |
0.443 |
|
| 2013 |
Zhu S, Zhang XO, Yang L. Panning for Long Noncoding RNAs. Biomolecules. 3: 226-41. PMID 24970166 DOI: 10.3390/biom3010226 |
0.442 |
|
| 2013 |
Zhang Y, Zhang XO, Chen T, Xiang JF, Yin QF, Xing YH, Zhu S, Yang L, Chen LL. Circular intronic long noncoding RNAs. Molecular Cell. 51: 792-806. PMID 24035497 DOI: 10.1016/J.Molcel.2013.08.017 |
0.531 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2016 |
Dong R, Zhang XO, Zhang Y, Ma XK, Chen LL, Yang L. CircRNA-derived pseudogenes. Cell Research. PMID 27021280 DOI: 10.1038/Cr.2016.42 |
0.293 |
|
| 2021 |
Zhang Y, Nguyen TM, Zhang XO, Wang L, Phan T, Clohessy JG, Pandolfi PP. Optimized RNA-targeting CRISPR/Cas13d technology outperforms shRNA in identifying functional circRNAs. Genome Biology. 22: 41. PMID 33478577 DOI: 10.1186/s13059-021-02263-9 |
0.288 |
|
| 2021 |
Ghanta KS, Chen Z, Mir A, Dokshin GA, Krishnamurthy PM, Yoon Y, Gallant J, Xu P, Zhang XO, Ozturk AR, Shin M, Idrizi F, Liu P, Gneid H, Edraki A, et al. 5' modifications improve potency and efficacy of DNA donors for precision genome editing. Elife. 10. PMID 34665130 DOI: 10.7554/eLife.72216 |
0.287 |
|
| 2015 |
Chen T, Xiang JF, Zhu S, Chen S, Yin QF, Zhang XO, Zhang J, Feng H, Dong R, Li XJ, Yang L, Chen LL. ADAR1 is required for differentiation and neural induction by regulating microRNA processing in a catalytically independent manner. Cell Research. 25: 459-76. PMID 25708366 DOI: 10.1038/cr.2015.24 |
0.284 |
|
| 2019 |
Smith JL, Mou H, Zhang X, Ozata D, Xue W. Modeling and identifying therapeutic targets in Hepatoblastoma. Journal of Clinical Oncology. 37: e21518-e21518. DOI: 10.1200/Jco.2019.37.15_Suppl.E21518 |
0.275 |
|
| 2019 |
Wu Z, Oeck S, West AP, Mangalhara KC, Sainz AG, Newman LE, Zhang XO, Wu L, Yan Q, Bosenberg M, Liu Y, Sulkowski PL, Tripple V, Kaech SM, Glazer PM, et al. Mitochondrial DNA Stress Signalling Protects the Nuclear Genome. Nature Metabolism. 1: 1209-1218. PMID 32395698 DOI: 10.1038/s42255-019-0150-8 |
0.195 |
|
| 2024 |
Huang L, Ravi M, Zhang XO, Verdejo-Torres O, Shendy NAM, Nezhady MAM, Gopalan S, Wang G, Durbin AD, Fazzio TG, Wu Q. PRMT5 orchestrates EGFR and AKT networks to activate NFκB and promote EMT. Biorxiv : the Preprint Server For Biology. PMID 38260418 DOI: 10.1101/2024.01.03.574104 |
0.191 |
|
| 2023 |
Sun S, Zhao Q, Zhao Y, Geng M, Wang Q, Gao Q, Zhang XO, Zhang W, Shuai L. BCL2 is a major regulator of haploidy maintenance in murine embryonic stem cells. Cell Proliferation. e13498. PMID 37144356 DOI: 10.1111/cpr.13498 |
0.174 |
|
| 2023 |
Li Y, Zhang XO, Liu Y, Lu A. Allele-specific binding (ASB) analyzer for annotation of allele-specific binding SNPs. Bmc Bioinformatics. 24: 464. PMID 38066439 DOI: 10.1186/s12859-023-05604-6 |
0.147 |
|
| 2022 |
Huang L, Zhang XO, Rozen EJ, Sun X, Sallis B, Verdejo-Torres O, Wigglesworth K, Moon D, Huang T, Cavaretta JP, Wang G, Zhang L, Shohet JM, Lee MM, Wu Q. PRMT5 activates AKT via methylation to promote tumor metastasis. Nature Communications. 13: 3955. PMID 35803962 DOI: 10.1038/s41467-022-31645-1 |
0.142 |
|
| 2021 |
Wang EY, Kuzmanov U, Smith JB, Dou W, Rafatian N, Lai BFL, Lu RXZ, Wu Q, Yazbeck J, Zhang XO, Sun Y, Gramolini A, Radisic M. An organ-on-a-chip model for pre-clinical drug evaluation in progressive non-genetic cardiomyopathy. Journal of Molecular and Cellular Cardiology. PMID 34216608 DOI: 10.1016/j.yjmcc.2021.06.012 |
0.12 |
|
| 2022 |
Lv B, Zhang XO, Pazour GJ. Arih2 regulates hedgehog signaling through smoothened ubiquitination and ER-associated degradation. Journal of Cell Science. PMID 35899529 DOI: 10.1242/jcs.260299 |
0.1 |
|
| 2005 |
WU F, LIN J, WILDE S, ZHANG X, YANG J. Nature and significance of the Early Cretaceous giant igneous event in eastern China Earth and Planetary Science Letters. 233: 103-119. DOI: 10.1016/J.EPSL.2005.02.019 |
0.022 |
|
| 2018 |
Zhang X. First-principles Study of Strain-Induced Magnetism in Defective Arsenene Journal of Superconductivity and Novel Magnetism. 32: 1735-1740. DOI: 10.1007/S10948-018-4870-X |
0.016 |
|
| 2003 |
Zhang X, Cawood PA, Wilde SA, Liu R, Song H, Li W, Snee LW. Geology and timing of mineralization at the Cangshang gold deposit, north-western Jiaodong Peninsula, China Mineralium Deposita. 38: 141-153. DOI: 10.1007/S00126-002-0290-7 |
0.015 |
|
| 2006 |
Lu X, Wu F, Guo J, Wilde SA, Yang J, Liu X, Zhang X. Zircon U–Pb geochronological constraints on the Paleoproterozoic crustal evolution of the Eastern block in the North China Craton Precambrian Research. 146: 138-164. DOI: 10.1016/J.PRECAMRES.2006.01.009 |
0.014 |
|
| 2005 |
Wu F, Yang J, Wilde SA, Zhang X. Geochronology, petrogenesis and tectonic implications of Jurassic granites in the Liaodong Peninsula, NE China Chemical Geology. 221: 127-156. DOI: 10.1016/J.CHEMGEO.2005.04.010 |
0.012 |
|
| Hide low-probability matches. |