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David A. Garfield - Publications

Affiliations: 
European Molecular Biology 
Area:
Genetics, Development, Evolutionary Biology
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 McGarvey AC, Kopp W, Vučićević D, Mattonet K, Kempfer R, Hirsekorn A, Bilić I, Gil M, Trinks A, Merks AM, Panáková D, Pombo A, Akalin A, Junker JP, Stainier DYR, ... Garfield D, et al. Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos. Cell Genomics. 2: 100083. PMID 36777038 DOI: 10.1016/j.xgen.2021.100083  0.324
2020 Floc'hlay S, Wong E, Zhao B, Viales RR, Thomas-Chollier M, Thieffry D, Garfield DA, Furlong EEM. -acting variation is common across regulatory layers but is often buffered during embryonic development. Genome Research. PMID 33310749 DOI: 10.1101/gr.266338.120  0.42
2019 Peng PC, Khoueiry P, Girardot C, Reddington JP, Garfield DA, Furlong EEM, Sinha S. The role of chromatin accessibility in cis-regulatory evolution. Genome Biology and Evolution. PMID 31114856 DOI: 10.1093/Gbe/Evz103  0.334
2018 Zhang S, Amourda C, Garfield D, Saunders TE. Selective Filopodia Adhesion Ensures Robust Cell Matching in the Drosophila Heart. Developmental Cell. 46: 189-203.e4. PMID 30016621 DOI: 10.1016/J.Devcel.2018.06.015  0.31
2018 Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. The cis-regulatory dynamics of embryonic development at single-cell resolution. Nature. PMID 29539636 DOI: 10.1038/Nature25981  0.369
2017 Schor IE, Degner JF, Harnett D, Cannavò E, Casale FP, Shim H, Garfield DA, Birney E, Stephens M, Stegle O, Furlong EE. Promoter shape varies across populations and affects promoter evolution and expression noise. Nature Genetics. PMID 28191888 DOI: 10.1038/Ng.3791  0.628
2017 Runcie DE, Dorey N, Garfield DA, Stumpp M, Dupont S, Wray GA. Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Genome Biology and Evolution. PMID 28082601 DOI: 10.1093/Gbe/Evw272  0.734
2016 Cannavò E, Koelling N, Harnett D, Garfield D, Casale FP, Ciglar L, Gustafson HE, Viales RR, Marco-Ferreres R, Degner JF, Zhao B, Stegle O, Birney E, Furlong EE. Genetic variants regulating expression levels and isoform diversity during embryogenesis. Nature. PMID 28024300 DOI: 10.1038/Nature20802  0.688
2016 Tica J, Lee E, Untergasser A, Meiers S, Garfield DA, Gokcumen O, Furlong EE, Park PJ, Stütz AM, Korbel JO. Next-generation sequencing-based detection of germline L1-mediated transductions. Bmc Genomics. 17: 342. PMID 27161561 DOI: 10.1186/S12864-016-2670-X  0.62
2015 Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE. Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks. Current Biology : Cb. PMID 26687625 DOI: 10.1016/J.Cub.2015.11.034  0.678
2014 Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Ultrasensitive proteome analysis using paramagnetic bead technology. Molecular Systems Biology. 10: 757. PMID 25358341 DOI: 10.15252/Msb.20145625  0.559
2014 Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Ultrasensitive proteome analysis using paramagnetic bead technology Molecular Systems Biology. 10. DOI: 10.15252/msb.20145625  0.508
2013 Garfield DA, Runcie DE, Babbitt CC, Haygood R, Nielsen WJ, Wray GA. The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network. Plos Biology. 11: e1001696. PMID 24204211 DOI: 10.1371/Journal.Pbio.1001696  0.748
2013 Zichner T, Garfield DA, Rausch T, Stütz AM, Cannavó E, Braun M, Furlong EE, Korbel JO. Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing. Genome Research. 23: 568-79. PMID 23222910 DOI: 10.1101/Gr.142646.112  0.673
2012 Garfield D, Haygood R, Nielsen WJ, Wray GA. Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus. Evolution & Development. 14: 152-67. PMID 23017024 DOI: 10.1111/J.1525-142X.2012.00532.X  0.649
2012 Runcie DE, Garfield DA, Babbitt CC, Wygoda JA, Mukherjee S, Wray GA. Genetics of gene expression responses to temperature stress in a sea urchin gene network. Molecular Ecology. 21: 4547-62. PMID 22856327 DOI: 10.1111/J.1365-294X.2012.05717.X  0.745
2012 Pespeni MH, Garfield DA, Manier MK, Palumbi SR. Genome-wide polymorphisms show unexpected targets of natural selection. Proceedings. Biological Sciences / the Royal Society. 279: 1412-20. PMID 21993504 DOI: 10.1098/Rspb.2011.1823  0.68
2010 Oliver TA, Garfield DA, Manier MK, Haygood R, Wray GA, Palumbi SR. Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin. Genome Biology and Evolution. 2: 800-14. PMID 20935062 DOI: 10.1093/Gbe/Evq063  0.711
2010 Garfield DA, Wray GA. The evolution of gene regulatory interactions Bioscience. 60: 15-23. DOI: 10.1525/Bio.2010.60.1.6  0.665
2009 Garfield DA, Wray GA. Comparative embryology without a microscope: using genomic approaches to understand the evolution of development. Journal of Biology. 8: 65. PMID 19664180 DOI: 10.1186/Jbiol161  0.628
2008 Tung J, Charpentier MJ, Garfield DA, Altmann J, Alberts SC. Genetic evidence reveals temporal change in hybridization patterns in a wild baboon population. Molecular Ecology. 17: 1998-2011. PMID 18363664 DOI: 10.1111/J.1365-294X.2008.03723.X  0.588
2007 Noor MA, Garfield DA, Schaeffer SW, Machado CA. Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions. Genetics. 177: 1417-28. PMID 18039875 DOI: 10.1534/Genetics.107.070672  0.647
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Garfield DA, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.68
2006 Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Garfield D, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609  0.685
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