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Sergey Kryazhimskiy - Publications

Affiliations: 
Biological Sciences University of California, San Diego, La Jolla, CA 
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Venkataram S, Kryazhimskiy S. Evolutionary repeatability of emergent properties of ecological communities. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 378: 20220047. PMID 37004728 DOI: 10.1098/rstb.2022.0047  0.73
2023 Johnson MS, Venkataram S, Kryazhimskiy S. Best Practices in Designing, Sequencing, and Identifying Random DNA Barcodes. Journal of Molecular Evolution. PMID 36651964 DOI: 10.1007/s00239-022-10083-z  0.718
2023 Venkataram S, Kuo HY, Hom EFY, Kryazhimskiy S. Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community. Nature Ecology & Evolution. 7: 143-154. PMID 36593292 DOI: 10.1038/s41559-022-01923-8  0.774
2020 Venkataram S, Monasky R, Sikaroodi SH, Kryazhimskiy S, Kacar B. Evolutionary stalling and a limit on the power of natural selection to improve a cellular module. Proceedings of the National Academy of Sciences of the United States of America. PMID 32680961 DOI: 10.1073/Pnas.1921881117  0.774
2020 Jerison ER, Nguyen Ba AN, Desai MM, Kryazhimskiy S. Chance and necessity in the pleiotropic consequences of adaptation for budding yeast. Nature Ecology & Evolution. PMID 32152531 DOI: 10.1038/S41559-020-1128-3  0.65
2019 Johnson MS, Martsul A, Kryazhimskiy S, Desai MM. Higher-fitness yeast genotypes are less robust to deleterious mutations. Science (New York, N.Y.). 366: 490-493. PMID 31649199 DOI: 10.1126/Science.Aay4199  0.629
2019 Fisher KJ, Kryazhimskiy S, Lang GI. Detecting genetic interactions using parallel evolution in experimental populations. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180237. PMID 31154981 DOI: 10.1098/Rstb.2018.0237  0.409
2019 Rojas Echenique JI, Kryazhimskiy S, Nguyen Ba AN, Desai MM. Modular epistasis and the compensatory evolution of gene deletion mutants. Plos Genetics. 15: e1007958. PMID 30768593 DOI: 10.1371/Journal.Pgen.1007958  0.627
2017 Jerison ER, Kryazhimskiy S, Mitchell JK, Bloom JS, Kruglyak L, Desai MM. Genetic variation in adaptability and pleiotropy in budding yeast. Elife. 6. PMID 28826486 DOI: 10.7554/Elife.27167  0.587
2017 Jerison ER, Kryazhimskiy S, Mitchell JK, Bloom JS, Kruglyak L, Desai MM. Author response: Genetic variation in adaptability and pleiotropy in budding yeast Elife. DOI: 10.7554/Elife.27167.025  0.537
2015 Neverov AD, Kryazhimskiy S, Plotkin JB, Bazykin GA. Coordinated Evolution of Influenza A Surface Proteins. Plos Genetics. 11: e1005404. PMID 26247472 DOI: 10.1371/Journal.Pgen.1005404  0.74
2015 Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R. Inexpensive multiplexed library preparation for megabase-sized genomes. Plos One. 10: e0128036. PMID 26000737 DOI: 10.1371/Journal.Pone.0128036  0.521
2015 Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R. Correction: Inexpensive multiplexed library preparation for megabase-sized genomes Plos One. 10. DOI: 10.1371/journal.pone.0131262  0.43
2014 Kryazhimskiy S, Rice DP, Jerison ER, Desai MM. Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity. Science (New York, N.Y.). 344: 1519-22. PMID 24970088 DOI: 10.1126/Science.1250939  0.646
2014 Pennings PS, Kryazhimskiy S, Wakeley J. Loss and recovery of genetic diversity in adapting populations of HIV. Plos Genetics. 10: e1004000. PMID 24465214 DOI: 10.1371/Journal.Pgen.1004000  0.421
2014 Kryazhimskiy S, Desai MM. Refining a key metabolic innovation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 111: 2056-7. PMID 24459186 DOI: 10.1073/Pnas.1323189111  0.614
2014 Feder AF, Kryazhimskiy S, Plotkin JB. Identifying signatures of selection in genetic time series. Genetics. 196: 509-22. PMID 24318534 DOI: 10.1534/Genetics.113.158220  0.693
2012 Kryazhimskiy S, Rice DP, Desai MM. Population subdivision and adaptation in asexual populations of Saccharomyces cerevisiae. Evolution; International Journal of Organic Evolution. 66: 1931-41. PMID 22671557 DOI: 10.1111/J.1558-5646.2011.01569.X  0.61
2011 Kryazhimskiy S, Draghi JA, Plotkin JB. Evolution. In evolution, the sum is less than its parts. Science (New York, N.Y.). 332: 1160-1. PMID 21636764 DOI: 10.1126/Science.1208072  0.701
2011 Kryazhimskiy S, Dushoff J, Bazykin GA, Plotkin JB. Prevalence of epistasis in the evolution of influenza A surface proteins. Plos Genetics. 7: e1001301. PMID 21390205 DOI: 10.1371/Journal.Pgen.1001301  0.701
2010 Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB. Young proteins experience more variable selection pressures than old proteins. Genome Research. 20: 1574-81. PMID 20921233 DOI: 10.1101/Gr.109595.110  0.69
2009 Kryazhimskiy S, Tkacik G, Plotkin JB. The dynamics of adaptation on correlated fitness landscapes. Proceedings of the National Academy of Sciences of the United States of America. 106: 18638-43. PMID 19858497 DOI: 10.1073/Pnas.0905497106  0.744
2009 Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM. Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates. Plos Pathogens. 5: e1000503. PMID 19578438 DOI: 10.1371/Journal.Ppat.1000503  0.671
2008 Kryazhimskiy S, Plotkin JB. The population genetics of dN/dS. Plos Genetics. 4: e1000304. PMID 19081788 DOI: 10.1371/Journal.Pgen.1000304  0.706
2008 Kryazhimskiy S, Bazykin GA, Plotkin JB, Plotkin J, Dushoff J. Directionality in the evolution of influenza A haemagglutinin. Proceedings. Biological Sciences / the Royal Society. 275: 2455-64. PMID 18647721 DOI: 10.1098/Rspb.2008.0521  0.682
2008 Kryazhimskiy S, Bazykin GA, Dushoff J. Natural selection for nucleotide usage at synonymous and nonsynonymous sites in influenza A virus genes. Journal of Virology. 82: 4938-45. PMID 18321967 DOI: 10.1128/Jvi.02415-07  0.392
2007 Kryazhimskiy S, Dieckmann U, Levin SA, Dushoff J. On state-space reduction in multi-strain pathogen models, with an application to antigenic drift in influenza A. Plos Computational Biology. 3: e159. PMID 17708677 DOI: 10.1371/Journal.Pcbi.0030159  0.563
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