Sergey Kryazhimskiy - Related publications

Affiliations: 
Biological Sciences University of California, San Diego, La Jolla, CA 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Phillips KN, Cooper TF. The cost of evolved constitutive gene expression is usually, but not always, maintained during evolution of generalist populations. Ecology and Evolution. 11: 12497-12507. PMID 34594515 DOI: 10.1002/ece3.7994   
2021 Bertram J. Allele frequency divergence reveals ubiquitous influence of positive selection in Drosophila. Plos Genetics. 17: e1009833. PMID 34591854 DOI: 10.1371/journal.pgen.1009833   
2021 Murray GGR, Balmer AJ, Herbert J, Hadijirin NF, Kemp CL, Matuszewska M, Bruchmann S, Hossain ASMM, Gottschalk M, Tucker AW, Miller E, Weinert LA. Mutation rate dynamics reflect ecological change in an emerging zoonotic pathogen. Plos Genetics. 17: e1009864. PMID 34748531 DOI: 10.1371/journal.pgen.1009864   
2021 Bailey NW, Desjonquères C, Drago A, Rayner JG, Sturiale SL, Zhang X. A neglected conceptual problem regarding phenotypic plasticity's role in adaptive evolution: The importance of genetic covariance and social drive. Evolution Letters. 5: 444-457. PMID 34621532 DOI: 10.1002/evl3.251   
2021 James ME, Wilkinson MJ, Bernal DM, Liu H, North HL, Engelstädter J, Ortiz-Barrientos D. Phenotypic and genotypic parallel evolution in parapatric ecotypes of Senecio. Evolution; International Journal of Organic Evolution. PMID 34687472 DOI: 10.1111/evo.14387   
2021 Yin X, Hedgecock D. Overt and concealed genetic loads revealed by QTL mapping of genotype-dependent viability in the Pacific oyster Crassostrea gigas. Genetics. PMID 34739049 DOI: 10.1093/genetics/iyab165   
2021 Horton JS, Flanagan LM, Jackson RW, Priest NK, Taylor TB. A mutational hotspot that determines highly repeatable evolution can be built and broken by silent genetic changes. Nature Communications. 12: 6092. PMID 34667151 DOI: 10.1038/s41467-021-26286-9   
2021 Lyu W, Dai X, Beaumont M, Yu F, He Z. Inferring the timing and strength of natural selection and gene migration in the evolution of chicken from ancient DNA data. Molecular Ecology Resources. PMID 34783162 DOI: 10.1111/1755-0998.13553   
2021 Goldberg Y, Friedman J. Positive interactions within and between populations decrease the likelihood of evolutionary rescue. Plos Computational Biology. 17: e1008732. PMID 33600401 DOI: 10.1371/journal.pcbi.1008732   
2021 Liang YY, Shi Y, Yuan S, Zhou BF, Chen XY, An QQ, Ingvarsson PK, Plomion C, Wang B. Linked selection shapes the landscape of genomic variation in three oak species. The New Phytologist. PMID 34637540 DOI: 10.1111/nph.17793   
2021 Armbruster CR, Marshall CW, Garber AI, Melvin JA, Zemke AC, Moore J, Zamora PF, Li K, Fritz IL, Manko CD, Weaver ML, Gaston JR, Morris A, Methé B, DePas WH, et al. Adaptation and genomic erosion in fragmented Pseudomonas aeruginosa populations in the sinuses of people with cystic fibrosis. Cell Reports. 37: 109829. PMID 34686349 DOI: 10.1016/j.celrep.2021.109829   
2021 Shen LL, Waheed A, Wang YP, Nkurikiyimfura O, Wang ZH, Yang LN, Zhan J. Multiple Mechanisms Drive the Evolutionary Adaptation of Effector Avr1 to Host Resistance. Journal of Fungi (Basel, Switzerland). 7. PMID 34682211 DOI: 10.3390/jof7100789   
2021 Bakerlee CW, Phillips AM, Nguyen Ba AN, Desai MM. Dynamics and variability in the pleiotropic effects of adaptation in laboratory budding yeast populations. Elife. 10. PMID 34596043 DOI: 10.7554/eLife.70918   
2021 Karunarathna NL, Patiranage DSR, Harloff HJ, Sashidhar N, Jung C. Genomic background selection to reduce the mutation load after random mutagenesis. Scientific Reports. 11: 19404. PMID 34593904 DOI: 10.1038/s41598-021-98934-5   
2021 Adams PE, Crist AB, Young EM, Willis JH, Phillips PC, Fierst JL. Slow recovery from inbreeding depression generated by the complex genetic architecture of segregating deleterious mutations. Molecular Biology and Evolution. PMID 34791426 DOI: 10.1093/molbev/msab330   
2021 Hoque MM, Noorian P, Espinoza-Vergara G, Manuneedhi Cholan P, Kim M, Rahman MH, Labbate M, Rice SA, Pernice M, Oehlers SH, McDougald D. Adaptation to an amoeba host drives selection of virulence-associated traits in Vibrio cholerae. The Isme Journal. PMID 34654895 DOI: 10.1038/s41396-021-01134-2   
2021 Ma Y, Liu D, Wariss HM, Zhang R, Tao L, Milne RI, Sun W. Demographic history and identification of threats revealed by population genomic analysis provide insights into conservation for an endangered maple. Molecular Ecology. PMID 34826164 DOI: 10.1111/mec.16289   
2021 Lai WY, Schlötterer C. Evolution of phenotypic variance in response to a novel hot environment. Molecular Ecology. PMID 34775658 DOI: 10.1111/mec.16274   
2021 Adeyemo AA, Shriner D, Bentley AR, Gbadegesin RA, Rotimi CN. Evolutionary genetics and acclimatization in nephrology. Nature Reviews. Nephrology. PMID 34584272 DOI: 10.1038/s41581-021-00483-7   
2021 Douglas GM, Shapiro BJ. Genic selection within prokaryotic pangenomes. Genome Biology and Evolution. PMID 34665261 DOI: 10.1093/gbe/evab234   
2021 Wood ZT, Wiegardt AK, Barton KL, Clark JD, Homola JJ, Olsen BJ, King BL, Kovach AI, Kinnison MT. Meta-analysis: Congruence of genomic and phenotypic differentiation across diverse natural study systems. Evolutionary Applications. 14: 2189-2205. PMID 34603492 DOI: 10.1111/eva.13264   
2021 Lambros M, Pechuan-Jorge X, Biro D, Ye K, Bergman A. Emerging Adaptive Strategies Under Temperature Fluctuations in a Laboratory Evolution Experiment of . Frontiers in Microbiology. 12: 724982. PMID 34745030 DOI: 10.3389/fmicb.2021.724982   
2021 Nosil P, Feder JL, Gompert Z. Biodiversity, resilience and the stability of evolutionary systems. Current Biology : Cb. 31: R1149-R1153. PMID 34637720 DOI: 10.1016/j.cub.2021.01.022   
2021 Petrelli S, Buglione M, Maselli V, Troiano C, Larson G, Frantz L, Manin A, Ricca E, Baccigalupi L, Wright D, Pietri C, Fulgione D. Population genomic, olfactory, dietary, and gut microbiota analyses demonstrate the unique evolutionary trajectory of feral pigs. Molecular Ecology. PMID 34676935 DOI: 10.1111/mec.16238   
2021 Kaushik S, Jain K. Time to fixation in changing environments. Genetics. 219. PMID 34740251 DOI: 10.1093/genetics/iyab148   
2021 Kaushik S, Jain K. Time to fixation in changing environments. Genetics. 219. PMID 34740251 DOI: 10.1093/genetics/iyab148   
2021 da Silva ÉDB, Xavier A, Faria MV. Impact of Genomic Prediction Model, Selection Intensity, and Breeding Strategy on the Long-Term Genetic Gain and Genetic Erosion in Soybean Breeding. Frontiers in Genetics. 12: 637133. PMID 34539725 DOI: 10.3389/fgene.2021.637133   
2021 Wilkinson MJ, Roda F, Walter GM, James ME, Nipper R, Walsh J, Allen SL, North HL, Beveridge CA, Ortiz-Barrientos D. Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflower. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34789571 DOI: 10.1073/pnas.2004901118   
2021 Ashraf B, Hunter DC, Bérénos C, Ellis PA, Johnston SE, Pilkington JG, Pemberton JM, Slate J. Genomic prediction in the wild: A case study in Soay sheep. Molecular Ecology. PMID 34719074 DOI: 10.1111/mec.16262   
2021 Lessard S, Li C, Zheng XD, Tao Y. Inclusive fitness and Hamilton's rule in a stochastic environment. Theoretical Population Biology. PMID 34627803 DOI: 10.1016/j.tpb.2021.09.007   
2021 Gunnarsson EB, Leder K, Foo J. Exact site frequency spectra of neutrally evolving tumors: A transition between power laws reveals a signature of cell viability. Theoretical Population Biology. 142: 67-90. PMID 34560155 DOI: 10.1016/j.tpb.2021.09.004   
2021 Camacho Mateu J, Sireci M, Muñoz MA. Phenotypic-dependent variability and the emergence of tolerance in bacterial populations. Plos Computational Biology. 17: e1009417. PMID 34555011 DOI: 10.1371/journal.pcbi.1009417   
2021 Durland E, De Wit P, Langdon C. Temporally balanced selection during development of larval Pacific oysters () inherently preserves genetic diversity within offspring. Proceedings. Biological Sciences. 288: 20203223. PMID 34465244 DOI: 10.1098/rspb.2020.3223   
2021 Xu J. Is Natural Population of Sexual, Parasexual, and/or Asexual? Frontiers in Cellular and Infection Microbiology. 11: 751676. PMID 34760719 DOI: 10.3389/fcimb.2021.751676   
2021 Cropp R, Norbury J. The eco-evolutionary modelling of populations and their traits using a measure of trait differentiation. Journal of Theoretical Biology. 531: 110893. PMID 34481861 DOI: 10.1016/j.jtbi.2021.110893   
2021 Cuenca-Cambronero M, Pantel JH, Marshall H, Nguyen TTT, Tomero-Sanz H, Orsini L. Evolutionary mechanisms underpinning fitness response to multiple stressors in . Evolutionary Applications. 14: 2457-2469. PMID 34745337 DOI: 10.1111/eva.13258   
2021 Ramasubramanian V, Beavis WD. Strategies to Assure Optimal Trade-Offs Among Competing Objectives for the Genetic Improvement of Soybean. Frontiers in Genetics. 12: 675500. PMID 34630507 DOI: 10.3389/fgene.2021.675500   
2021 Reid JM, Bignal E, Bignal S, McCracken DI, Fenn SR, Trask AE, Monaghan P. Integrating advances in population and evolutionary ecology with conservation strategy through long-term studies of red-billed choughs. The Journal of Animal Ecology. PMID 34679183 DOI: 10.1111/1365-2656.13615   
2021 Chiang CWK. The Opportunities and Challenges of Integrating Population Histories Into Genetic Studies for Diverse Populations: A Motivating Example From Native Hawaiians. Frontiers in Genetics. 12: 643883. PMID 34646295 DOI: 10.3389/fgene.2021.643883   
2021 Song W, Shi Y, Wang W, Pan W, Qian W, Yu S, Zhao M, Lin GN. A selection pressure landscape for 870 human polygenic traits. Nature Human Behaviour. PMID 34782732 DOI: 10.1038/s41562-021-01231-4   
2021 Gamboa MP, Ghalambor CK, Sillett TS, Morrison SA, Funk WC. Adaptive divergence in bill morphology and other thermoregulatory traits is facilitated by restricted gene flow in song sparrows on the California Channel Islands. Molecular Ecology. PMID 34704295 DOI: 10.1111/mec.16253   
2021 Zhang W, Sun X, Wei X, Gao Y, Song J, Bai Y. Geography-Driven Evolution of Potato Virus A Revealed by Genetic Diversity Analysis of the Complete Genome. Frontiers in Microbiology. 12: 738646. PMID 34659170 DOI: 10.3389/fmicb.2021.738646   
2021 Sekine D, Tsuda M, Yabe S, Shimizu T, Machita K, Saruta M, Yamada T, Ishimoto M, Iwata H, Kaga A. Improving Quantitative Traits in Self-Pollinated Crops Using Simulation-Based Selection With Minimal Crossing. Frontiers in Plant Science. 12: 729645. PMID 34539720 DOI: 10.3389/fpls.2021.729645   
2021 He S, Jiang Y, Thistlethwaite R, Hayden MJ, Trethowan R, Daetwyler HD. Improving Selection Efficiency of Crop Breeding With Genomic Prediction Aided Sparse Phenotyping. Frontiers in Plant Science. 12: 735285. PMID 34691111 DOI: 10.3389/fpls.2021.735285   
2021 Subramanian S. Deleterious protein-coding variants in diverse cattle breeds of the world. Genetics, Selection, Evolution : Gse. 53: 80. PMID 34654372 DOI: 10.1186/s12711-021-00674-7   
2021 Lee CE. Ion Transporter Gene Families as Physiological Targets of Natural Selection During Salinity Transitions in a Copepod. Physiology (Bethesda, Md.). 36: 335-349. PMID 34704854 DOI: 10.1152/physiol.00009.2021   
2021 Marulanda JJ, Mi X, Utz HF, Melchinger AE, Würschum T, Longin CFH. Optimum breeding strategies using genomic and phenotypic selection for the simultaneous improvement of two traits. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 34618174 DOI: 10.1007/s00122-021-03945-5   
2021 Cheng JY, Stern AJ, Racimo F, Nielsen R. Detecting selection in multiple populations by modelling ancestral admixture components. Molecular Biology and Evolution. PMID 34626111 DOI: 10.1093/molbev/msab294   
2021 Gallego-García N, Caballero S, Shaffer HB. Are genomic updates of well-studied species worth the investment for conservation? A case study of the Critically Endangered Magdalena River turtle. The Journal of Heredity. PMID 34628509 DOI: 10.1093/jhered/esab063   
2021 Bock DG, Baeckens S, Pita-Aquino JN, Chejanovski ZA, Michaelides SN, Muralidhar P, Lapiedra O, Park S, Menke DB, Geneva AJ, Losos JB, Kolbe JJ. Changes in selection pressure can facilitate hybridization during biological invasion in a Cuban lizard. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34654747 DOI: 10.1073/pnas.2108638118