Josep F Abril, PhD - Publications

Affiliations: 
2006- Genetics, Microbiology & Statistics Universitat de Barcelona, Barcelona, Cataluña, Spain 
Area:
Computational Biology
Website:
https://compgen.bio.ub.edu/

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Santabárbara-Ruiz P, Esteban-Collado J, Pérez L, Viola G, Abril JF, Milán M, Corominas M, Serras F. Ask1 and Akt act synergistically to promote ROS-dependent regeneration in Drosophila. Plos Genetics. 15: e1007926. PMID 30677014 DOI: 10.1371/journal.pgen.1007926  0.4
2017 Boloc D, Rodríguez N, Gassó P, Abril JF, Bernardo M, Lafuente A, Mas S. SiNoPsis: Single Nucleotide Polymorphisms selection and promoter profiling. Bioinformatics (Oxford, England). PMID 28968821 DOI: 10.1093/bioinformatics/btx570  1
2017 Roca-Ayats N, Balcells S, Garcia-Giralt N, Falcó-Mascaró M, Martínez-Gil N, Abril JF, Urreizti R, Dopazo J, Quesada-Gómez JM, Nogués X, Mellibovsky L, Prieto-Alhambra D, Dunford JE, Javaid MK, Russell RG, et al. GGPS1 Mutation and Atypical Femoral Fractures with Bisphosphonates. The New England Journal of Medicine. 376: 1794-1795. PMID 28467865 DOI: 10.1056/NEJMc1612804  0.52
2017 Hjelmsø MH, Hellmér M, Fernandez-Cassi X, Timoneda N, Lukjancenko O, Seidel M, Elsässer D, Aarestrup FM, Löfström C, Bofill-Mas S, Abril JF, Girones R, Schultz AC. Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing. Plos One. 12: e0170199. PMID 28099518 DOI: 10.1371/journal.pone.0170199  0.12
2015 Gabre JL, Martinez P, Nilsson Sköld H, Ortega-Martinez O, Abril JF. The coelomic epithelium transcriptome from a clonal sea star, Coscinasterias muricata. Marine Genomics. PMID 26321383 DOI: 10.1016/j.margen.2015.07.010  1
2015 Boloc D, Castillo-Lara S, Marfany G, Gonzàlez-Duarte R, Abril JF. Distilling a Visual Network of Retinitis Pigmentosa Gene-Protein Interactions to Uncover New Disease Candidates. Plos One. 10: e0135307. PMID 26267445 DOI: 10.1371/journal.pone.0135307  1
2015 Rodríguez-Esteban G, González-Sastre A, Rojo-Laguna JI, Saló E, Abril JF. Digital gene expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea. Bmc Genomics. 16: 361. PMID 25952370 DOI: 10.1186/s12864-015-1533-1  1
2015 Perea-Atienza E, Gavilán B, Chiodin M, Abril JF, Hoff KJ, Poustka AJ, Martinez P. The nervous system of Xenacoelomorpha: a genomic perspective. The Journal of Experimental Biology. 218: 618-28. PMID 25696825 DOI: 10.1242/jeb.110379  1
2013 Steijger T, Abril JF, Engström PG, Kokocinski F, Hubbard TJ, Guigó R, Harrow J, Bertone P. Assessment of transcript reconstruction methods for RNA-seq. Nature Methods. 10: 1177-84. PMID 24185837 DOI: 10.1038/nmeth.2714  1
2013 Isolani ME, Abril JF, Saló E, Deri P, Bianucci AM, Batistoni R. Planarians as a model to assess in vivo the role of matrix metalloproteinase genes during homeostasis and regeneration. Plos One. 8: e55649. PMID 23405188 DOI: 10.1371/journal.pone.0055649  1
2011 Garanto A, Riera M, Pomares E, Permanyer J, de Castro-Miró M, Sava F, Abril JF, Marfany G, Gonzàlez-Duarte R. High transcriptional complexity of the retinitis pigmentosa CERKL gene in human and mouse. Investigative Ophthalmology & Visual Science. 52: 5202-14. PMID 21508105 DOI: 10.1167/iovs.10-7101  1
2011 Fernández-Taboada E, Rodríguez-Esteban G, Saló E, Abril JF. A proteomics approach to decipher the molecular nature of planarian stem cells. Bmc Genomics. 12: 133. PMID 21356107 DOI: 10.1186/1471-2164-12-133  1
2010 Abril JF, Cebrià F, Rodríguez-Esteban G, Horn T, Fraguas S, Calvo B, Bartscherer K, Saló E. Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea. Bmc Genomics. 11: 731. PMID 21194483 DOI: 10.1186/1471-2164-11-731  1
2009 Irimia M, Roy SW, Neafsey DE, Abril JF, Garcia-Fernandez J, Koonin EV. Complex selection on 5' splice sites in intron-rich organisms. Genome Research. 19: 2021-7. PMID 19745111 DOI: 10.1101/gr.089276.108  1
2009 Blanco E, Abril JF. Computational gene annotation in new genome assemblies using GeneID Methods in Molecular Biology. 537: 243-261. PMID 19378148 DOI: 10.1007/978-1-59745-251-9_12  1
2009 Saló E, Abril JF, Adell T, Cebrià F, Eckelt K, Fernandez-Taboada E, Handberg-Thorsager M, Iglesias M, Molina MD, Rodríguez-Esteban G. Planarian regeneration: achievements and future directions after 20 years of research. The International Journal of Developmental Biology. 53: 1317-27. PMID 19247944 DOI: 10.1387/ijdb.072414es  1
2007 Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, ... ... Abril JF, et al. The diploid genome sequence of an individual human. Plos Biology. 5: e254. PMID 17803354 DOI: 10.1371/journal.pbio.0050254  1
2007 Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Abril JF, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/nature05874  1
2006 Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, et al. EGASP: the human ENCODE Genome Annotation Assessment Project. Genome Biology. 7: S2.1-31. PMID 16925836 DOI: 10.1186/gb-2006-7-s1-s2  1
2005 Abril JF, Castelo R, Guigó R. Comparison of splice sites in mammals and chicken. Genome Research. 15: 111-9. PMID 15590946 DOI: 10.1101/gr.3108805  1
2004 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Abril JF, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/nature02426  0.01
2003 Abril JF, Guigó R, Wiehe T. gff2aplot: Plotting sequence comparisons. Bioinformatics (Oxford, England). 19: 2477-9. PMID 14668236 DOI: 10.1093/bioinformatics/btg334  1
2003 Guigo R, Dermitzakis ET, Agarwal P, Ponting CP, Parra G, Reymond A, Abril JF, Keibler E, Lyle R, Ucla C, Antonarakis SE, Brent MR. Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes. Proceedings of the National Academy of Sciences of the United States of America. 100: 1140-5. PMID 12552088 DOI: 10.1073/pnas.0337561100  1
2003 Parra G, Agarwal P, Abril JF, Wiehe T, Fickett JW, Guigó R. Comparative gene prediction in human and mouse. Genome Research. 13: 108-17. PMID 12529313 DOI: 10.1101/gr.871403  1
2002 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/nature01262  1
2002 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, ... ... Abril JF, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/science.1076181  1
2002 Glöckner G, Eichinger L, Szafranski K, Pachebat JA, Bankier AT, Dear PH, Lehmann R, Baumgart C, Parra G, Abril JF, Guigó R, Kumpf K, Tunggal B, Cox E, Quail MA, et al. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Nature. 418: 79-85. PMID 12097910 DOI: 10.1038/nature00847  1
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