| Year |
Citation |
Score |
| 2023 |
Zadra N, Tatti A, Silverj A, Piccinno R, Devilliers J, Lewis C, Arnoldi D, Montarsi F, Escuer P, Fusco G, De Sanctis V, Feuda R, Sánchez-Gracia A, Rizzoli A, Rota-Stabelli O. Shallow Whole-Genome Sequencing of and from Italy and an Updated Picture of Their Evolution Based on Mitogenomics and Barcoding. Insects. 14. PMID 38132578 DOI: 10.3390/insects14120904 |
0.433 |
|
| 2021 |
Escuer P, Pisarenco VA, Fernández-Ruiz AA, Vizueta J, Sánchez-Herrero JF, Arnedo MA, Sánchez-Gracia A, Rozas J. The chromosome-scale assembly of the Canary Islands endemic spider Dysdera silvatica (Arachnida, Araneae) sheds light on the origin and genome structure of chemoreceptor gene families in chelicerates. Molecular Ecology Resources. PMID 34268885 DOI: 10.1111/1755-0998.13471 |
0.797 |
|
| 2020 |
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, et al. Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 123. PMID 32917281 DOI: 10.1186/s12915-020-00864-7 |
0.8 |
|
| 2020 |
Vizueta J, Escuer P, Sánchez-Gracia A, Rozas J. Genome mining and sequence analysis of chemosensory soluble proteins in arthropods. Methods in Enzymology. 642: 1-20. PMID 32828248 DOI: 10.1016/Bs.Mie.2020.05.015 |
0.824 |
|
| 2020 |
Vizueta J, Escuer P, Frías-López C, Guirao-Rico S, Hering L, Mayer G, Rozas J, Sánchez-Gracia A. Evolutionary history of major chemosensory gene families across Panarthropoda. Molecular Biology and Evolution. PMID 32750126 DOI: 10.1093/Molbev/Msaa197 |
0.805 |
|
| 2020 |
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, et al. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 90. PMID 32698880 DOI: 10.1186/S12915-020-00820-5 |
0.794 |
|
| 2020 |
Vizueta J, Sánchez-Gracia A, Rozas J. BITACORA: A comprehensive tool for the identification and annotation of gene families in genome assemblies. Molecular Ecology Resources. PMID 32492257 DOI: 10.1111/1755-0998.13202 |
0.865 |
|
| 2020 |
Almudi I, Vizueta J, Wyatt CDR, de Mendoza A, Marlétaz F, Firbas PN, Feuda R, Masiero G, Medina P, Alcaina-Caro A, Cruz F, Gómez-Garrido J, Gut M, Alioto TS, Vargas-Chavez C, et al. Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature Communications. 11: 2631. PMID 32457347 DOI: 10.1038/S41467-020-16284-8 |
0.847 |
|
| 2020 |
Kapun M, Barrón MG, Staubach F, Obbard DJ, Wiberg RAW, Vieira J, Goubert C, Rota-Stabelli O, Kankare M, Bogaerts-Márquez M, Haudry A, Waidele L, Kozeretska I, Pasyukova EG, Loeschcke V, et al. Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses. Molecular Biology and Evolution. PMID 32413142 DOI: 10.1093/Molbev/Msaa120 |
0.706 |
|
| 2020 |
Clifton B, Jimenez J, Kimura A, Chahine Z, Librado P, Sanchez-Gracia A, Abbassi M, Carranza F, Chan C, Marchetti M, Zhang W, Shi M, Vu C, Yeh S, Fanti L, et al. Understanding the early evolutionary stages of a tandem D. melanogaster-specific gene family: a structural and functional population study. Molecular Biology and Evolution. PMID 32359138 DOI: 10.1093/Molbev/Msaa109 |
0.856 |
|
| 2019 |
Sánchez-Herrero JF, Frías-López C, Escuer P, Hinojosa-Alvarez S, Arnedo MA, Sánchez-Gracia A, Rozas J. The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates. Gigascience. 8. PMID 31430368 DOI: 10.1093/Gigascience/Giz099 |
0.802 |
|
| 2019 |
Vizueta J, Macías-Hernández N, Arnedo MA, Rozas J, Sánchez-Gracia A. Chance and predictability in evolution: the genomic basis of convergent dietary specializations in an adaptive radiation. Molecular Ecology. PMID 31359512 DOI: 10.1111/Mec.15199 |
0.824 |
|
| 2019 |
Leria L, Vila-Farré M, Álvarez-Presas M, Sánchez-Gracia A, Rozas J, Sluys R, Riutort M. Cryptic species delineation in freshwater planarians of the genus Dugesia (Platyhelminthes, Tricladida): Extreme intraindividual genetic diversity, morphological stasis, and karyological variability. Molecular Phylogenetics and Evolution. PMID 31151789 DOI: 10.1016/J.Ympev.2019.05.010 |
0.795 |
|
| 2018 |
Pérez-Pardal L, Sánchez-Gracia A, Álvarez I, Traoré A, Ferraz JBS, Fernández I, Costa V, Chen S, Tapio M, Cantet RJC, Patel A, Meadow RH, Marshall FB, Beja-Pereira A, Goyache F. Legacies of domestication, trade and herder mobility shape extant male zebu cattle diversity in South Asia and Africa. Scientific Reports. 8: 18027. PMID 30575786 DOI: 10.1038/S41598-018-36444-7 |
0.403 |
|
| 2018 |
Vizueta J, Rozas J, Sánchez-Gracia A. Comparative Genomics Reveals Thousands of Novel Chemosensory Genes and Massive Changes in Chemoreceptor Repertories across Chelicerates. Genome Biology and Evolution. 10: 1221-1236. PMID 29788250 DOI: 10.1093/Gbe/Evy081 |
0.871 |
|
| 2017 |
Sánchez-Gracia A, Guirao-Rico S, Hinojosa-Alvarez S, Rozas J. Computational prediction of the phenotypic effects of genetic variants: basic concepts and some application examples in Drosophila nervous system genes. Journal of Neurogenetics. 1-13. PMID 29168413 DOI: 10.1080/01677063.2017.1398241 |
0.8 |
|
| 2017 |
Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Datasets. Molecular Biology and Evolution. PMID 29029172 DOI: 10.1093/Molbev/Msx248 |
0.803 |
|
| 2017 |
Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, et al. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nature Ecology & Evolution. 1: 59. PMID 28812732 DOI: 10.1038/S41559-016-0059 |
0.815 |
|
| 2016 |
Guirao-Rico S, Sánchez-Gracia A, Charlesworth D. Sequence diversity patterns suggesting balancing selection in partially sex-linked genes of the plant Silene latifolia are not generated by demographic history or gene flow. Molecular Ecology. PMID 28035715 DOI: 10.1111/Mec.13969 |
0.81 |
|
| 2016 |
Vizueta J, Frías-López C, Macías-Hernández N, Arnedo MA, Sánchez-Gracia A, Rozas J. Evolution of chemosensory gene families in arthropods: Insight from the first inclusive comparative transcriptome analysis across spider appendages. Genome Biology and Evolution. PMID 28028122 DOI: 10.1093/Gbe/Evw296 |
0.822 |
|
| 2016 |
Frías-López C, Sánchez-Herrero JF, Guirao-Rico S, Mora E, Arnedo MA, Sánchez-Gracia A, Rozas J. DOMINO: Development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms. Bioinformatics (Oxford, England). PMID 27531104 DOI: 10.1093/Bioinformatics/Btw534 |
0.803 |
|
| 2016 |
Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, ... ... Sanchez-Gracia A, et al. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Insect Biochemistry and Molecular Biology. PMID 27522922 DOI: 10.1016/J.Ibmb.2016.07.005 |
0.867 |
|
| 2016 |
Bidegaray-Batista L, Sánchez-Gracia A, Santulli G, Maiorano L, Guisan A, Vogler AP, Arnedo MA. Imprints of multiple glacial refugia in the Pyrenees revealed by phylogeography and palaeodistribution modelling of an endemic spider. Molecular Ecology. 25: 2046-64. PMID 26878195 DOI: 10.1111/Mec.13585 |
0.363 |
|
| 2016 |
Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications. 7: 10507. PMID 26856261 DOI: 10.1038/Ncomms10507 |
0.836 |
|
| 2016 |
Torres-Oliva M, Almeida FC, Sánchez-Gracia A, Rozas J. Comparative Genomics Uncovers Unique Gene Turnover and Evolutionary Rates in a Gene Family Involved in the Detection of Insect Cuticular Pheromones Genome Biology and Evolution. 8: 1734-1747. DOI: 10.1093/Gbe/Evw108 |
0.858 |
|
| 2015 |
Frías-López C, Almeida FC, Guirao-Rico S, Vizueta J, Sánchez-Gracia A, Arnedo MA, Rozas J. Comparative analysis of tissue-specific transcriptomes in the funnel-web spider Macrothele calpeiana (Araneae, Hexathelidae). Peerj. 3: e1064. PMID 26157629 DOI: 10.7717/Peerj.1064 |
0.795 |
|
| 2015 |
Blanco I, Kuchenbaecker K, Cuadras D, Wang X, Barrowdale D, de Garibay GR, Librado P, Sánchez-Gracia A, Rozas J, Bonifaci N, McGuffog L, Pankratz VS, Islam A, Mateo F, Berenguer A, et al. Assessing associations between the AURKA-HMMR-TPX2-TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers. Plos One. 10: e0120020. PMID 25830658 DOI: 10.1371/Journal.Pone.0120020 |
0.75 |
|
| 2015 |
Almeida FC, Sánchez-Gracia A, Walden KKO, Robertson HM, Rozas J. Positive selection in extra cellular domains in the diversification of Strigamia maritima chemoreceptors Frontiers in Ecology and Evolution. 3. DOI: 10.3389/Fevo.2015.00079 |
0.81 |
|
| 2014 |
Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005 |
0.885 |
|
| 2014 |
Almeida FC, Sánchez-Gracia A, Campos JL, Rozas J. Family size evolution in Drosophila chemosensory gene families: a comparative analysis with a critical appraisal of methods. Genome Biology and Evolution. 6: 1669-82. PMID 24951565 DOI: 10.1093/Gbe/Evu130 |
0.827 |
|
| 2014 |
Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biology and Evolution. 6: 1454-65. PMID 24904011 DOI: 10.1093/Gbe/Evu117 |
0.847 |
|
| 2014 |
Álvarez-Presas M, Sánchez-Gracia A, Carbayo F, Rozas J, Riutort M. Insights into the origin and distribution of biodiversity in the Brazilian Atlantic forest hot spot: a statistical phylogeographic study using a low-dispersal organism. Heredity. 112: 656-65. PMID 24549112 DOI: 10.1038/Hdy.2014.3 |
0.798 |
|
| 2012 |
Sánchez-Gracia A, Castresana J. Impact of deep coalescence on the reliability of species tree inference from different types of DNA markers in mammals. Plos One. 7: e30239. PMID 22276164 DOI: 10.1371/Journal.Pone.0030239 |
0.673 |
|
| 2011 |
Sánchez-Gracia A, Rozas J. Molecular population genetics of the OBP83 genomic region in Drosophila subobscura and D. guanche: contrasting the effects of natural selection and gene arrangement expansion in the patterns of nucleotide variation. Heredity. 106: 191-201. PMID 20332808 DOI: 10.1038/Hdy.2010.26 |
0.843 |
|
| 2010 |
Sánchez-Gracia A, Romero-Pozuelo J, Ferrús A. Two frequenins in Drosophila: unveiling the evolutionary history of an unusual neuronal calcium sensor (NCS) duplication. Bmc Evolutionary Biology. 10: 54. PMID 20170488 DOI: 10.1186/1471-2148-10-54 |
0.769 |
|
| 2009 |
Sánchez-Gracia A, Vieira FG, Rozas J. Molecular evolution of the major chemosensory gene families in insects. Heredity. 103: 208-16. PMID 19436326 DOI: 10.1038/Hdy.2009.55 |
0.865 |
|
| 2008 |
Sánchez-Gracia A, Rozas J. Divergent evolution and molecular adaptation in the Drosophila odorant-binding protein family: inferences from sequence variation at the OS-E and OS-F genes. Bmc Evolutionary Biology. 8: 323. PMID 19038039 DOI: 10.1186/1471-2148-8-323 |
0.855 |
|
| 2007 |
Vieira FG, Sánchez-Gracia A, Rozas J. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. Genome Biology. 8: R235. PMID 18039354 DOI: 10.1186/Gb-2007-8-11-R235 |
0.85 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Sanchez-Gracia A, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.866 |
|
| 2007 |
Sánchez-Gracia A, Rozas J. Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans. Genetics. 175: 1923-35. PMID 17277360 DOI: 10.1534/Genetics.106.068015 |
0.828 |
|
| 2005 |
Sánchez-Gracia A, Maside X, Charlesworth B. High rate of horizontal transfer of transposable elements in Drosophila. Trends in Genetics : Tig. 21: 200-3. PMID 15797612 DOI: 10.1016/J.Tig.2005.02.001 |
0.385 |
|
| 2003 |
Sánchez-Gracia A, Aguadé M, Rozas J. Patterns of nucleotide polymorphism and divergence in the odorant-binding protein genes OS-E and OS-F: analysis in the melanogaster species subgroup of Drosophila. Genetics. 165: 1279-88. PMID 14668382 |
0.832 |
|
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