Filipe G. Vieira - Publications

2005-2010 University of Barcelona, Barcelona, Cataluña, Spain 

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Gopalakrishnan S, Ebenesersdóttir SS, Lundstrøm IKC, Turner-Walker G, Moore KHS, Luisi P, Margaryan A, Martin MD, Ellegaard MR, Magnússon ÓÞ, Sigurðsson Á, Snorradóttir S, Magnúsdóttir DN, Laffoon JE, van Dorp L, ... ... Vieira FG, et al. The population genomic legacy of the second plague pandemic. Current Biology : Cb. PMID 36182700 DOI: 10.1016/j.cub.2022.09.023  0.462
2022 Iwanycki Ahlstrand N, Gopalakrishnan S, Vieira FG, Bieker VC, Meudt HM, Dunbar-Co S, Rothfels CJ, Martinez-Swatson KA, Maldonado C, Hassemer G, Shipunov A, Bowers MD, Gardner E, Xu M, Ghorbani A, et al. Travel Tales of a Worldwide Weed: Genomic Signatures of L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes. Frontiers in Plant Science. 13: 838166. PMID 35755675 DOI: 10.3389/fpls.2022.838166  0.366
2021 Gabrielaite M, Torp MH, Rasmussen MS, Andreu-Sánchez S, Vieira FG, Pedersen CB, Kinalis S, Madsen MB, Kodama M, Demircan GS, Simonyan A, Yde CW, Olsen LR, Marvig RL, Østrup O, et al. A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data. Cancers. 13. PMID 34944901 DOI: 10.3390/cancers13246283  0.349
2021 Sinding MS, Ciucani MM, Ramos-Madrigal J, Carmagnini A, Rasmussen JA, Feng S, Chen G, Vieira FG, Mattiangeli V, Ganjoo RK, Larson G, Sicheritz-Pontén T, Petersen B, Frantz L, Gilbert MTP, et al. Kouprey () genomes unveil polytomic origin of wild Asian . Iscience. 24: 103226. PMID 34712923 DOI: 10.1016/j.isci.2021.103226  0.508
2021 Sánchez-Barreiro F, Gopalakrishnan S, Ramos-Madrigal J, Westbury MV, de Manuel M, Margaryan A, Ciucani MM, Vieira FG, Patramanis Y, Kalthoff DC, Timmons Z, Sicheritz-Pontén T, Dalén L, Ryder OA, Zhang G, et al. Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum). Molecular Ecology. PMID 34176179 DOI: 10.1111/mec.16043  0.43
2020 Barnett R, Westbury MV, Sandoval-Velasco M, Vieira FG, Jeon S, Zazula G, Martin MD, Ho SYW, Mather N, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Zepeda-Mendoza ML, Antunes A, Baez AC, et al. Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens. Current Biology : Cb. PMID 33065008 DOI: 10.1016/j.cub.2020.09.051  0.469
2020 Sinding MS, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Pitulko VV, Kuderna L, Feuerborn TR, Frantz LAF, Vieira FG, Niemann J, Samaniego Castruita JA, Carøe C, Andersen-Ranberg EU, Jordan PD, Pavlova EY, et al. Arctic-adapted dogs emerged at the Pleistocene-Holocene transition. Science (New York, N.Y.). 368: 1495-1499. PMID 32587022 DOI: 10.1126/Science.Aaz8599  0.419
2020 Pacheco G, van Grouw H, Shapiro MD, Gilbert MTP, Vieira FG. Darwin's Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds. Genome Biology and Evolution. PMID 32053199 DOI: 10.1093/Gbe/Evaa027  0.514
2020 Margaryan A, Sinding MS, Liu S, Vieira FG, Chan YL, Nathan SKSS, Moodley Y, Bruford MW, Gilbert MTP. Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros Zoological Journal of the Linnean Society. 190: 372-383. DOI: 10.1093/Zoolinnean/Zlaa004  0.424
2020 Hartvig I, So T, Changtragoon S, Tran HT, Bouamanivong S, Ogden R, Senn H, Vieira FG, Turner F, Talbot R, Theilade I, Nielsen LR, Kjær ED. Conservation genetics of the critically endangered Siamese rosewood ( Dalbergia cochinchinensis ): recommendations for management and sustainable use Conservation Genetics. 21: 677-692. DOI: 10.1007/S10592-020-01279-1  0.367
2019 Fox EA, Wright AE, Fumagalli M, Vieira FG. ngsLD: evaluating linkage disequilibrium using genotype likelihoods. Bioinformatics (Oxford, England). PMID 30903149 DOI: 10.1093/Bioinformatics/Btz200  0.367
2019 Alves JM, Carneiro M, Cheng JY, Lemos de Matos A, Rahman MM, Loog L, Campos PF, Wales N, Eriksson A, Manica A, Strive T, Graham SC, Afonso S, Bell DJ, Belmont L, ... ... Vieira FG, et al. Parallel adaptation of rabbit populations to myxoma virus. Science (New York, N.Y.). PMID 30765607 DOI: 10.1126/Science.Aau7285  0.364
2018 Barnett R, Sinding MS, Vieira FG, Mendoza MLZ, Bonnet M, Araldi A, Kienast I, Zambarda A, Yamaguchi N, Henschel P, Gilbert MTP. No longer locally extinct? Tracing the origins of a lion () living in Gabon. Conservation Genetics (Print). 19: 611-618. PMID 31007636 DOI: 10.1007/S10592-017-1039-2  0.301
2018 Sinding MS, Gopalakrishan S, Vieira FG, Samaniego Castruita JA, Raundrup K, Heide Jørgensen MP, Meldgaard M, Petersen B, Sicheritz-Ponten T, Mikkelsen JB, Marquard-Petersen U, Dietz R, Sonne C, Dalén L, Bachmann L, et al. Population genomics of grey wolves and wolf-like canids in North America. Plos Genetics. 14: e1007745. PMID 30419012 DOI: 10.1371/Journal.Pgen.1007745  0.471
2018 Kodama M, Brinch-Pedersen H, Sharma S, Holme IB, Joernsgaard B, Dzhanfezova T, Amby DB, Vieira FG, Liu S, Gilbert MTP. Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq. Bmc Genomics. 19: 811. PMID 30409110 DOI: 10.1186/S12864-018-5135-6  0.37
2018 Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, et al. Interspecific Gene Flow Shaped the Evolution of the Genus Canis. Current Biology : Cb. PMID 30344120 DOI: 10.1016/J.Cub.2018.08.041  0.528
2018 Bro-Jørgensen MH, Carøe C, Vieira FG, Nestor S, Hallström A, Gregersen KM, Etting V, Gilbert MTP, Sinding MS. Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull Journal of Archaeological Science. 99: 47-54. DOI: 10.1016/J.Jas.2018.09.001  0.37
2017 Wang H, Vieira FG, Crawford JE, Chu C, Nielsen R. Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice. Genome Research. PMID 28385712 DOI: 10.1101/Gr.204800.116  0.446
2017 Biard V, Gol'din P, Gladilina E, Vishnyakova K, McGrath K, Vieira FG, Wales N, Fontaine MC, Speller C, Olsen MT. Genomic and proteomic identification of Late Holocene remains: Setting baselines for Black Sea odontocetes Journal of Archaeological Science: Reports. 15: 262-271. DOI: 10.1016/J.Jasrep.2017.07.008  0.463
2017 Sinding MS, Vieira FG, Smith MH. Unmatched DNA preservation prove arctic hare and sheep wool in Norse Greenlandic textile from “The Farm Beneath the Sand” Journal of Archaeological Science: Reports. 14: 603-608. DOI: 10.1016/J.Jasrep.2017.06.043  0.45
2016 Sánchez Barreiro F, Vieira FG, Martin MD, Haile J, Gilbert MT, Wales N. Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes. Molecular Ecology Resources. PMID 27762072 DOI: 10.1111/1755-0998.12610  0.419
2016 Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, et al. Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature Communications. 7: 11693. PMID 27243207 DOI: 10.1038/Ncomms11693  0.519
2016 Wang H, Xu X, Vieira FG, Xiao Y, Li Z, Wang J, Nielsen R, Chu C. The Power of Inbreeding: NGS Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication. Molecular Plant. PMID 27179918 DOI: 10.1016/J.Molp.2016.04.018  0.465
2016 Skovrind M, Olsen MT, Vieira FG, Pacheco G, Carl H, Gilbert MT, Møller PR. Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe. Ecology and Evolution. 6: 1064-74. PMID 26941944 DOI: 10.1002/Ece3.1909  0.374
2016 Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, ... ... Vieira FG, et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications. 7: 10507. PMID 26856261 DOI: 10.1038/Ncomms10507  0.781
2016 Vieira FG, Lassalle F, Korneliussen TS, Fumagalli M. Improving the estimation of genetic distances from Next-Generation Sequencing data Biological Journal of the Linnean Society. 117: 139-149. DOI: 10.1111/Bij.12511  0.371
2015 da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, et al. The origin and evolution of maize in the Southwestern United States. Nature Plants. 1: 14003. PMID 27246050 DOI: 10.1038/Nplants.2014.3  0.376
2015 Martin MD, Vieira FG, Ho SY, Wales N, Schubert M, Seguin-Orlando A, Ristaino JB, Gilbert MT. Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans. Molecular Biology and Evolution. PMID 26576850 DOI: 10.1093/Molbev/Msv241  0.434
2015 Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, et al. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Current Biology : Cb. PMID 26412128 DOI: 10.1016/J.Cub.2015.08.032  0.737
2014 Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biology and Evolution. 6: 1454-65. PMID 24904011 DOI: 10.1093/Gbe/Evu117  0.749
2014 Fumagalli M, Vieira FG, Linderoth T, Nielsen R. ngsTools: methods for population genetics analyses from next-generation sequencing data. Bioinformatics (Oxford, England). 30: 1486-7. PMID 24458950 DOI: 10.1093/Bioinformatics/Btu041  0.383
2013 Fumagalli M, Vieira FG, Korneliussen TS, Linderoth T, Huerta-Sánchez E, Albrechtsen A, Nielsen R. Quantifying population genetic differentiation from next-generation sequencing data. Genetics. 195: 979-92. PMID 23979584 DOI: 10.1534/Genetics.113.154740  0.4
2012 Vieira FG, Forêt S, He X, Rozas J, Field LM, Zhou JJ. Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses. Plos One. 7: e43034. PMID 22952629 DOI: 10.1371/Journal.Pone.0043034  0.68
2012 Librado P, Vieira FG, Rozas J. BadiRate: estimating family turnover rates by likelihood-based methods. Bioinformatics (Oxford, England). 28: 279-81. PMID 22080468 DOI: 10.1093/Bioinformatics/Btr623  0.777
2011 Vieira FG, Rozas J. Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: origin and evolutionary history of the chemosensory system. Genome Biology and Evolution. 3: 476-90. PMID 21527792 DOI: 10.1093/Gbe/Evr033  0.742
2010 Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, ... ... Vieira FG, et al. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 107: 12168-73. PMID 20566863 DOI: 10.1073/Pnas.1003379107  0.755
2010 Zhou JJ, Vieira FG, He XL, Smadja C, Liu R, Rozas J, Field LM. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Molecular Biology. 19: 113-22. PMID 20482644 DOI: 10.1111/J.1365-2583.2009.00919.X  0.703
2009 Sánchez-Gracia A, Vieira FG, Rozas J. Molecular evolution of the major chemosensory gene families in insects. Heredity. 103: 208-16. PMID 19436326 DOI: 10.1038/Hdy.2009.55  0.807
2007 Vieira FG, Sánchez-Gracia A, Rozas J. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. Genome Biology. 8: R235. PMID 18039354 DOI: 10.1186/Gb-2007-8-11-R235  0.794
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Vieira FG, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.753
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