Filipe G. Vieira - Publications

Affiliations: 
2005-2010 University of Barcelona, Barcelona, Cataluña, Spain 

14/35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, et al. Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature Communications. 7: 11693. PMID 27243207 DOI: 10.1038/ncomms11693  0.76
2016 Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, ... ... Vieira FG, et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications. 7: 10507. PMID 26856261 DOI: 10.1038/ncomms10507  0.76
2015 Martin MD, Vieira FG, Ho SY, Wales N, Schubert M, Seguin-Orlando A, Ristaino JB, Gilbert MT. Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans. Molecular Biology and Evolution. PMID 26576850 DOI: 10.1093/molbev/msv241  0.76
2015 Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, et al. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Current Biology : Cb. PMID 26412128 DOI: 10.1016/j.cub.2015.08.032  0.76
2014 Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biology and Evolution. 6: 1454-65. PMID 24904011 DOI: 10.1093/gbe/evu117  0.76
2014 Fumagalli M, Vieira FG, Linderoth T, Nielsen R. ngsTools: methods for population genetics analyses from next-generation sequencing data. Bioinformatics (Oxford, England). 30: 1486-7. PMID 24458950 DOI: 10.1093/bioinformatics/btu041  0.76
2013 Fumagalli M, Vieira FG, Korneliussen TS, Linderoth T, Huerta-Sánchez E, Albrechtsen A, Nielsen R. Quantifying population genetic differentiation from next-generation sequencing data. Genetics. 195: 979-92. PMID 23979584 DOI: 10.1534/genetics.113.154740  0.76
2013 Vieira FG, Fumagalli M, Albrechtsen A, Nielsen R. Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation. Genome Research. 23: 1852-61. PMID 23950147 DOI: 10.1101/gr.157388.113  0.76
2012 Vieira FG, Forêt S, He X, Rozas J, Field LM, Zhou JJ. Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses. Plos One. 7: e43034. PMID 22952629 DOI: 10.1371/journal.pone.0043034  0.76
2011 Vieira FG, Rozas J. Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: origin and evolutionary history of the chemosensory system. Genome Biology and Evolution. 3: 476-90. PMID 21527792 DOI: 10.1093/gbe/evr033  0.76
2010 Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, ... ... Vieira FG, et al. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 107: 12168-73. PMID 20566863 DOI: 10.1073/pnas.1003379107  0.76
2010 Zhou JJ, Vieira FG, He XL, Smadja C, Liu R, Rozas J, Field LM. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Molecular Biology. 19: 113-22. PMID 20482644 DOI: 10.1111/j.1365-2583.2009.00919.x  0.76
2009 Sánchez-Gracia A, Vieira FG, Rozas J. Molecular evolution of the major chemosensory gene families in insects. Heredity. 103: 208-16. PMID 19436326 DOI: 10.1038/hdy.2009.55  0.76
2007 Vieira FG, Sánchez-Gracia A, Rozas J. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. Genome Biology. 8: R235. PMID 18039354 DOI: 10.1186/gb-2007-8-11-r235  0.76
Low-probability matches
2020 Sinding MS, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Pitulko VV, Kuderna L, Feuerborn TR, Frantz LAF, Vieira FG, Niemann J, Samaniego Castruita JA, Carøe C, Andersen-Ranberg EU, Jordan PD, Pavlova EY, et al. Arctic-adapted dogs emerged at the Pleistocene-Holocene transition. Science (New York, N.Y.). 368: 1495-1499. PMID 32587022 DOI: 10.1126/science.aaz8599  0.01
2020 Margaryan A, Sinding MS, Liu S, Vieira FG, Chan YL, Nathan SKSS, Moodley Y, Bruford MW, Gilbert MTP. Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros Zoological Journal of the Linnean Society. 190: 372-383. DOI: 10.1093/ZOOLINNEAN/ZLAA004  0.01
2019 Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, de Manuel Montero M, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, et al. Interspecific Gene Flow Shaped the Evolution of the Genus Canis. Current Biology : Cb. 29: 4152. PMID 31794747 DOI: 10.1016/j.cub.2019.11.009  0.01
2019 Fox EA, Wright AE, Fumagalli M, Vieira FG. ngsLD: evaluating linkage disequilibrium using genotype likelihoods. Bioinformatics (Oxford, England). PMID 30903149 DOI: 10.1093/bioinformatics/btz200  0.01
2019 Alves JM, Carneiro M, Cheng JY, Lemos de Matos A, Rahman MM, Loog L, Campos PF, Wales N, Eriksson A, Manica A, Strive T, Graham SC, Afonso S, Bell DJ, Belmont L, ... ... Vieira FG, et al. Parallel adaptation of rabbit populations to myxoma virus. Science (New York, N.Y.). PMID 30765607 DOI: 10.1126/science.aau7285  0.01
2019 Martins JS, Vieira FG, Nascimento DHA, Sabino G, Ribeiro JM, Brandão FHL, Vimiero CB. Analysis of the Method for Estimating the Hip Joint Centre for determination of the Hip and Knee Joint Angles International Journal of Advanced Engineering Research and Science. 6: 80-84. DOI: 10.22161/IJAERS.6.4.9  0.01
2018 Barnett R, Sinding MS, Vieira FG, Mendoza MLZ, Bonnet M, Araldi A, Kienast I, Zambarda A, Yamaguchi N, Henschel P, Gilbert MTP. No longer locally extinct? Tracing the origins of a lion () living in Gabon. Conservation Genetics (Print). 19: 611-618. PMID 31007636 DOI: 10.1007/s10592-017-1039-2  0.01
2018 Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, et al. Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. Gigascience. 7. PMID 30535251 DOI: 10.1093/gigascience/giy151  0.01
2018 Sinding MS, Gopalakrishan S, Vieira FG, Samaniego Castruita JA, Raundrup K, Heide Jørgensen MP, Meldgaard M, Petersen B, Sicheritz-Ponten T, Mikkelsen JB, Marquard-Petersen U, Dietz R, Sonne C, Dalén L, Bachmann L, et al. Population genomics of grey wolves and wolf-like canids in North America. Plos Genetics. 14: e1007745. PMID 30419012 DOI: 10.1371/journal.pgen.1007745  0.01
2018 Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, et al. Interspecific Gene Flow Shaped the Evolution of the Genus Canis. Current Biology : Cb. PMID 30344120 DOI: 10.1016/j.cub.2018.08.041  0.01
2018 Wright AE, Fumagalli M, Cooney CR, Bloch NI, Vieira FG, Buechel SD, Kolm N, Mank JE. Male-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture. Evolution Letters. 2: 52-61. PMID 30283664 DOI: 10.1002/evl3.39  0.01
2018 Hernández Y, Bernstein R, Pagan P, Vargas L, McCaig W, Ramrattan G, Akther S, Larracuente A, Di L, Vieira FG, Qiu WG. BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines. Bmc Bioinformatics. 19: 76. PMID 29499649 DOI: 10.1186/s12859-018-2074-9  0.01
2017 Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, et al. Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. Gigascience. 6: 1-13. PMID 28854615 DOI: 10.1093/gigascience/gix049  0.01
2017 Wang H, Vieira FG, Crawford JE, Chu C, Nielsen R. Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice. Genome Research. PMID 28385712 DOI: 10.1101/gr.204800.116  0.01
2017 Sá Esteves P, Loureiro D, Albuquerque E, Vieira F, Lagarto L, Neves S, Cerejeira J. Risk Factors of Increased Mortality During Hospitalization in Acutely-ill Elderly Patients with Altered State of Consciousness European Psychiatry. 41: S175-S176. DOI: 10.1016/j.eurpsy.2017.01.2074  0.01
2016 Sánchez Barreiro F, Vieira FG, Martin MD, Haile J, Gilbert MT, Wales N. Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes. Molecular Ecology Resources. PMID 27762072 DOI: 10.1111/1755-0998.12610  0.01
2016 Júnior PA, Vieira FG, Magalhães CA, Ribeiro JS, Rios IG. Numerical method to digital photoelasticity using plane polariscope. Optics Express. 24: 12617-24. PMID 27410283 DOI: 10.1364/OE.24.012617  0.01
2016 Vieira FG, Albrechtsen A, Nielsen R. Estimating IBD tracts from low coverage NGS data. Bioinformatics (Oxford, England). PMID 27153648 DOI: 10.1093/bioinformatics/btw212  0.01
2016 Sá Esteves P, Loureiro D, Albuquerque E, Vieira F, Lagarto L, Neves S, Cerejeira J. Dementia in acutely-ill medical elderly patients European Psychiatry. 33: S190-S190. DOI: 10.1016/J.EURPSY.2016.01.429  0.01
2010 Richards S, Gibbs RA, Gerardo NM, Moran N, Nakabachi A, Stern D, Tagu D, Wilson ACC, Muzny D, Kovar C, Cree A, Chacko J, Chandrabose MN, Dao MD, Dinh HH, et al. Genome sequence of the pea aphid Acyrthosiphon pisum Plos Biology. 8. DOI: 10.1371/journal.pbio.1000313  0.01
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Vieira FG, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/nature06341  0.01
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