Stefan Wallin - Publications

Affiliations: 
Physics Memorial University, St. John's, Newfoundland and Labrador, Canada 

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bazmi S, Seifi B, Wallin S. Simulations of a protein fold switch reveal crowding-induced population shifts driven by disordered regions. Communications Chemistry. 6: 191. PMID 37689829 DOI: 10.1038/s42004-023-00995-2  0.387
2022 Bazmi S, Wallin S. Crowding-induced protein destabilization in the absence of soft attractions. Biophysical Journal. PMID 35672949 DOI: 10.1016/j.bpj.2022.06.005  0.441
2021 Seifi B, Wallin S. The C-terminal domain of transcription factor RfaH: Folding, fold switching and energy landscape. Biopolymers. e23420. PMID 33521926 DOI: 10.1002/bip.23420  0.373
2020 Seifi B, Aina A, Wallin S. Structural fluctuations and mechanical stabilities of the metamorphic protein RfaH. Proteins. PMID 32996201 DOI: 10.1002/prot.26014  0.359
2020 Trotter D, Wallin S. Effects of Topology and Sequence in Protein Folding Linked via Conformational Fluctuations. Biophysical Journal. 118: 1370-1380. PMID 32061276 DOI: 10.1016/j.bpj.2020.01.020  0.489
2015 Holzgräfe C, Wallin S. Local versus global fold switching in protein evolution: insight from a three-letter continuous model. Physical Biology. 12: 026002. PMID 25706822 DOI: 10.1088/1478-3975/12/2/026002  0.373
2014 Holzgräfe C, Wallin S. Smooth functional transition along a mutational pathway with an abrupt protein fold switch. Biophysical Journal. 107: 1217-1225. PMID 25185557 DOI: 10.1016/j.bpj.2014.07.020  0.407
2013 Bhattacherjee A, Wallin S. Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening. Plos Computational Biology. 9: e1003277. PMID 24204228 DOI: 10.1371/journal.pcbi.1003277  0.343
2012 Staneva I, Huang Y, Liu Z, Wallin S. Binding of two intrinsically disordered peptides to a multi-specific protein: a combined Monte Carlo and molecular dynamics study. Plos Computational Biology. 8: e1002682. PMID 23028280 DOI: 10.1371/Journal.Pcbi.1002682  0.555
2012 Bhattacherjee A, Wallin S. Coupled folding-binding in a hydrophobic/polar protein model: impact of synergistic folding and disordered flanks. Biophysical Journal. 102: 569-78. PMID 22325280 DOI: 10.1016/j.bpj.2011.12.008  0.397
2011 Chan HS, Zhang Z, Wallin S, Liu Z. Cooperativity, local-nonlocal coupling, and nonnative interactions: principles of protein folding from coarse-grained models. Annual Review of Physical Chemistry. 62: 301-26. PMID 21453060 DOI: 10.1146/Annurev-Physchem-032210-103405  0.441
2009 Staneva I, Wallin S. All-atom Monte Carlo approach to protein-peptide binding. Journal of Molecular Biology. 393: 1118-28. PMID 19733177 DOI: 10.1016/j.jmb.2009.08.063  0.321
2008 Zarrine-Afsar A, Wallin S, Neculai AM, Neudecker P, Howell PL, Davidson AR, Chan HS. Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding. Proceedings of the National Academy of Sciences of the United States of America. 105: 9999-10004. PMID 18626019 DOI: 10.1073/pnas.0801874105  0.625
2008 Yang JS, Wallin S, Shakhnovich EI. Universality and diversity of folding mechanics for three-helix bundle proteins. Proceedings of the National Academy of Sciences of the United States of America. 105: 895-900. PMID 18195374 DOI: 10.1073/Pnas.0707284105  0.508
2007 Wallin S, Zeldovich KB, Shakhnovich EI. The folding mechanics of a knotted protein. Journal of Molecular Biology. 368: 884-93. PMID 17368671 DOI: 10.1016/J.Jmb.2007.02.035  0.579
2005 Wallin S, Chan HS. A critical assessment of the topomer search model of protein folding using a continuum explicit-chain model with extensive conformational sampling. Protein Science : a Publication of the Protein Society. 14: 1643-60. PMID 15930009 DOI: 10.1110/ps.041317705  0.645
2004 Favrin G, Irbäck A, Wallin S. Sequence-based study of two related proteins with different folding behaviors. Proteins. 54: 8-12. PMID 14705019 DOI: 10.1002/prot.10575  0.371
2003 Favrin G, Irbäck A, Samuelsson B, Wallin S. Two-state folding over a weak free-energy barrier. Biophysical Journal. 85: 1457-65. PMID 12944263 DOI: 10.1016/S0006-3495(03)74578-0  0.406
2003 Wallin S, Farwer J, Bastolla U. Testing similarity measures with continuous and discrete protein models. Proteins. 50: 144-57. PMID 12471607 DOI: 10.1002/prot.10271  0.32
2002 Favrin G, Irbäck A, Wallin S. Folding of a small helical protein using hydrogen bonds and hydrophobicity forces. Proteins. 47: 99-105. PMID 11933057 DOI: 10.1002/prot.10072  0.448
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